Array 1 30818-30610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEGO01000088.1 Pseudomonas aeruginosa strain Pae_CF67.08d CF67.08d_contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30817 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 30757 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 30697 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 30637 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGCCCTACGGATCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25882-27406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEGO01000024.1 Pseudomonas aeruginosa strain Pae_CF67.08d CF67.08d_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25882 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 25942 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 26002 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 26062 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 26122 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 26182 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 26242 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 26302 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 26362 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 26422 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 26483 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 26543 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 26603 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 26663 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 26723 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 26783 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 26843 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 26903 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 26959 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 27019 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 27079 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 27139 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 27199 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 27259 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 27319 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 27379 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTAGTTCACTGCCGTATAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGCAGCTAAGAAAATCCTATCGACGACAAAGTGCTCGAGCATCTC # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37633-36284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEGO01000024.1 Pseudomonas aeruginosa strain Pae_CF67.08d CF67.08d_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37632 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 37572 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 37512 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 37452 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 37392 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 37332 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 37272 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 37212 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 37152 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 37092 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 37032 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 36972 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 36912 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 36852 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 36792 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 36732 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 36672 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 36612 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 36552 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 36492 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 36432 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 36372 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 36311 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //