Array 1 40544-39479 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJVG01000003.1 Escherichia coli strain ME2L-19-454 NODE_3_length_307160_cov_17.950882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40543 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40482 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40421 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40360 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40299 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40238 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40177 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40116 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40055 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39994 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39933 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39872 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39811 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39751 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39690 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39629 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39568 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39507 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57233-56045 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJVG01000003.1 Escherichia coli strain ME2L-19-454 NODE_3_length_307160_cov_17.950882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57232 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57171 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57110 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57049 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 56988 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 56927 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 56866 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 56805 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 56744 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 56683 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 56622 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 56561 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 56500 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56439 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56378 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56317 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56256 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56195 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56134 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56073 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //