Array 1 4176005-4181745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013675.1 Xanthomonas oryzae pv. oryzae strain PXO236 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4176005 31 100.0 36 ............................... TGCGTTTGATGCATCTGTCGGCGTCATGCAGGCCGC 4176072 31 100.0 33 ............................... TTGCGGATGAGCCGGAACACATACGCCGTGGCC 4176136 31 100.0 35 ............................... CCGGCAAACTTACCGTGGTCTAGCTTACGCAGGCC 4176202 31 100.0 35 ............................... CTTCTGTTGGCGGAGGCCTTTCGGGCCCGTGTGTT 4176268 31 100.0 34 ............................... CAGTAAACTTAACGTTGTCCAGCATGTCAAACAC 4176333 31 100.0 35 ............................... ACGAGCTGGACTCAGTACCACAGAGACTCAACCGC 4176399 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGGGGCGTGGGTG 4176464 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCCCGCGGTGTCG 4176530 31 100.0 36 ............................... GCGCCATAGAGCGCGAATCTCAAATGCGGCCTTGCC 4176597 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 4176662 31 100.0 35 ............................... GCCATTGCCGCATACGCCGCGTTGCGCATCGCTGT 4176728 31 100.0 34 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGA 4176793 31 100.0 34 ............................... ATAGCAGCCGCAGATTACTTCAAAGGATCTTGCC 4176858 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 4176924 31 100.0 35 ............................... CCAGGGCAGCGGAAATCGTTCGTCTGGCTCAACAA 4176990 31 100.0 34 ............................... ATGGCCTTGCGCCCGATCTTGCGGCACGCGACCT 4177055 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 4177120 31 100.0 35 ............................... GTGCCAAGTGTCTTACCAGCAACGGACGGCACATC 4177186 31 100.0 34 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGACG 4177251 31 100.0 35 ............................... TATAATGTCGCGTACATGACGTTTAATGACTCCGT 4177317 31 100.0 35 ............................... TTGTCCTCATCCTGGAGCGCACCACCCGCCTGGCT 4177383 31 100.0 35 ............................... CAGCGCAACATGGTCACGGTGCTGGCCGAAGAGCG 4177449 31 100.0 35 ............................... GGCCAGACGCTGGGTGTCAGCCAGTCCGGTAATGA 4177515 31 100.0 35 ............................... TCCGTAGGGGGTTCCCCCCTACACCCCCGGATCGG 4177581 31 100.0 35 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGTA 4177647 31 100.0 36 ............................... TGTGGATTTATGGGCGCGCTGTGTGGTTGGGCAGGC 4177714 31 100.0 36 ............................... CTCAAAATTGCACAGTATCCAGAGGAGGTGACCACA 4177781 31 100.0 35 ............................... GGACACGTTTCTTTTCCTTGCGGTATTTGTAAATG 4177847 31 100.0 35 ............................... ATCAACGGCCCATTTGACATTGTGGCCTGGCAGCC 4177913 31 100.0 34 ............................... AGCACTACTGCTGCATACTGCCCAGCTATGCCCG 4177978 31 100.0 36 ............................... TCGCCTGTGGACCCGGACCTGGACACGGTCGCGAAG 4178045 31 100.0 34 ............................... GTTACTCGTGTCGAAGTACCAAGTCTTAATCCCA 4178110 31 100.0 34 ............................... TTAATCCGCATCTTGGCATACCTATAGGCATTCC 4178175 31 100.0 35 ............................... TCCGCCCCATCTAAGTCAATCCAACTTGTTGGTGC 4178241 31 100.0 34 ............................... ACACAACTTCGCGCCATCATCGCCGGCGTAACGC 4178306 31 100.0 38 ............................... AGGGTGTTAGCTGGCACAAGCTGAGAAGCAAATGGAGG 4178375 31 100.0 35 ............................... ACTGTAAGGGCATTGATCCAGGGACAGGCCAATAT 4178441 31 100.0 35 ............................... CTGCGAGGGCGAGCTCGCGTACTTGCTCAATATAC 4178507 31 100.0 33 ............................... TTGGGCGGATAGGCGAAGCCGTGCGCATTGACC 4178571 31 100.0 33 ............................... TCGAGCGCTTGGCGCGCGGCGAACGGATCGCGC 4178635 31 100.0 35 ............................... AGACCGTTCGGGGTGATGCCGAGCAGCTTGACCAG 4178701 31 100.0 34 ............................... CTCCGGGACGGTCAGCTAGAGACCTTCCGCTACG 4178766 31 100.0 34 ............................... GCCCACACGCCGATCGCACAGAAATCCGATGTCT 4178831 31 100.0 34 ............................... GCACATGACGCTGCGCGCATCGCGCAGATTCGCC 4178896 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 4178962 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 4179026 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 4179090 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 4179157 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 4179222 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 4179287 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 4179353 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 4179419 31 100.0 33 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCCG 4179483 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 4179548 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 4179614 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 4179679 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 4179745 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 4179811 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 4179877 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 4179942 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 4180007 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 4180074 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 4180140 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 4180205 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 4180272 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 4180338 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 4180404 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 4180471 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 4180537 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 4180603 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 4180668 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 4180732 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 4180797 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 4180863 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 4180929 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4180994 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4181059 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4181125 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 4181191 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4181257 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4181321 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4181388 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4181453 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4181518 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4181585 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4181650 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 4181715 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 88 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //