Array 1 75392-75894 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKO01000012.1 Akkermansia sp. BIOML-A1 scaffold12_size102502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 75392 33 100.0 33 ................................. CAGAGAAGTTTAAGAATCTCGGAGAGATAGGCG 75458 33 100.0 34 ................................. GCCTACTACAACCAGCTTAATGGCGAATACATGT 75525 33 100.0 34 ................................. CTGATGGTACGGCCAATCCATCTTTGGTAGGCGA 75592 33 100.0 34 ................................. TTGATATTGTACCGGTATCCCGGCATCATGGACA 75659 33 100.0 35 ................................. TGTGCTGGGGTCGATGATCCATTTTTGGCTGTCGG 75727 33 100.0 35 ................................. GTCCAATGCGACCAGATTTTCGACCACGTCCACTA 75795 33 100.0 34 ................................. CACCAGTAATCAAAAATCTTGATGTCCCATGACT 75862 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGTCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCCCGCCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTACAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CCGGGCTGACGCATGACCGGAGCAACAAGGCTTTTGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATGATTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTATCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCACCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCTTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCGCATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCGCACATTTCCACGCTCCACAACCCGTACCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3048-1814 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKO01000014.1 Akkermansia sp. BIOML-A1 scaffold14_size89933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 3047 31 100.0 34 ............................... TCAAGGCAGCCGATGTGATTGACGCGGCAATCGA 2982 31 100.0 33 ............................... TTTGCGTTGCGCAAAACTCCATGATACCATCCG 2918 31 100.0 34 ............................... GCCTCCACAGAAGCGGCCCACTTCTTGGCGAGTT 2853 31 100.0 34 ............................... TGAGCCTCCGCACTACGGGCGGCAAACTCACTCA 2788 31 100.0 33 ............................... TTCACTCATAATCAATTAACCTGAATCAAACTG 2724 31 100.0 34 ............................... CTGATGGACGCCGTGTTTCCGGGGTGATGAACAA 2659 31 100.0 33 ............................... AAGCAATCACACTTTTCGCACACATGCAATAAA 2595 31 100.0 35 ............................... TCTGTACCTCATACCCGCGATAAGAATGAGACTGA 2529 31 100.0 34 ............................... CTACCTCTCTAACCTCTCCTTTTATTGAAGAGAA 2464 31 100.0 34 ............................... CTCTCTCATTTCCTCTCTCATTTTTGCCCCTGAT 2399 31 100.0 34 ............................... AGGGCCGCCTCCGCGCCATCAGCAAAAGCTCCGG 2334 31 100.0 34 ............................... ATCTCCGACCAAGTCCGGTCCTTGATAGGTGCCT 2269 31 100.0 34 ............................... AGCTTCCCGTACTCCCGGCTCAACTGCCGCTGCA 2204 31 100.0 3 ............................... TCC Deletion [2171] 2170 31 64.5 35 .ATTGGGGAAG.C.................. CGCGGGGAGGTTGGCAAATTCGGCGTCGGTCATAA 2104 31 96.8 34 ............C.................. TATGCTTGCTATCTTTCCCCCTAATTCCCTGTAA 2039 31 96.8 33 ............C.................. ACGCGCCAGCTGCACAACAATCAGGGCGGCCGG 1975 31 96.8 35 ............C.................. GGTCAATGGAGTTGAGGGTACCCGTGATGGTTTCC 1909 31 96.8 34 ............C.................. TATGTCAGGGCGCCACGTTTGATATTGCTACTAC 1844 31 87.1 0 ............C.A...T........C... | ========== ====== ====== ====== =============================== =================================== ================== 20 31 96.9 32 GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Left flank : GACGGGGCCGCCCTTAAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTACGTCATTGAGGCTTGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAAGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTTGGACCTCTGACCTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGAAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCGGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTATCAGAAGGGAAATGGCGTTTCCAGAGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGACTGGCTGTACAGAAAGATGATGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAGCAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 77334-76846 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKO01000015.1 Akkermansia sp. BIOML-A1 scaffold15_size88287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 77333 31 100.0 35 ............................... CCCCTCAAATAACACTCCTCATGCAACCTACGCTG 77267 31 100.0 34 ............................... CCAAACTTGTCCCTGTCCACCATGAAATCCCCTA 77202 31 100.0 34 ............................... CTGCCGCCTTTGACTACATGGACGGCGTGGGCGT 77137 31 100.0 33 ............................... AATGGCTATCAGGAGGCAGCTCCGGAACACCCA 77073 31 100.0 35 ............................... CCCGCGACCTTGCCGAGGGGGAAACCTCCCCAGTG 77007 31 100.0 34 ............................... GATTTCACAGAAGAGGACAGAGCGGAAGCCAGAA 76942 31 100.0 34 ............................... AGCAAAATCTGGAAAACGGAACATCCAGCCTTTT 76877 31 83.9 0 ....................GC...G...GT | T [76853] ========== ====== ====== ====== =============================== =================================== ================== 8 31 98.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCCTTTTTCCATTTCACAGGCTTTCCGCTCCAAGAGCGGAAAGCCTTTTTTATGCCGGAATACCGCCATATACGGTAGTGATCCGTACCCAACGAGTTGTAAATTGCCCGGAAAACGGATGCGGCAGTACGCCACGTAATAATGGGAAGAGACGTTTTCCGGCACCTCCTTTCCAACCCGTCTCCATGGTGCAGGTGGGAAAGTTTCTGGACGAAATGCGCGGGACGGACTACTATTACTCCTGCATCGCGGCAGGCACGGGCCGTCAGGTGGCCGGAACGACTCCTTGGCGGGATCTTTTTCTGCCCTTCGCACTCCCCGCGCCAACCCCCAGCTCACAGGAAAATCCCAGAACACCGGCGATTCCTGTAACTCGCAGGGTATCTTAGATTGACATCCCCCATATACTATTTCAGGCGTGGAATATGCATCTCCGCGGGCAGGTTGGCGCAAAATATCCTTTTCGTGCCTGACCCTTAACATATATATTCCCCCGCC # Right flank : TTATCAGGAGCAGATGGTCCGATGCGTTCTTCTGATGATTCCTTTTGCCTGAAAGGCTTTTCGATGACGTTCAGACCATGAAAAAGCGCCGGACCCCGGGAAGGGGGCCGACGCTTGCGGTATAGGAGGGGGGAATTAATGGGAGCAGCTGGCGCAGGCCCAGCCTTCGCGGATTTTGGCAAAGAAGTCGTTGCCTTTGTCGTCCACCAGGATGAAAGCGGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCTACCTTTTTGATGTTGTTCTTGGCAAGAATAGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGTTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTTTCCTGGAACAGGTCCACATAGGAATCCATGCGTCCCGCGGTGGTAGGCCCGAAGGAGCCGGAGGGATAGCCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 140452-141196 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKO01000008.1 Akkermansia sp. BIOML-A1 scaffold8_size179869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 140452 31 100.0 34 ............................... GCCAACCTCTTCTATCAAAGCCAAACCCCGGTAA 140517 31 100.0 35 ............................... AGGATTTGGAACTTACCGTTTCACCGTGGGCCGAA 140583 31 100.0 34 ............................... TATGAGTGCGAAAAGTGCCACTCGATCACCGCAA 140648 31 100.0 33 ............................... CCGGCTGACGTTGCGGCGATGCGAGAGGCACCC 140712 31 100.0 34 ............................... TACAGTCCGCAAGTTGTTCTTCAGGCGCGTTACA 140777 31 100.0 34 ............................... CCGGCGAGGATCACCTGGTGGAATTCGTATTGGA 140842 31 100.0 35 ............................... CAATTTCTCCAATCAGGCCGCGGCATCCGTGCAGC 140908 31 100.0 34 ............................... TTTCCGCATCCCATTCGATTTTAACGTGTTATAA 140973 31 100.0 32 ............................... TCCGGGTTGGCGTTGTAGGTGTCGTCTATCAC 141036 31 100.0 35 ............................... TACCTGTCCCGCACTTTTTGGATTAACACGGCCGT 141102 31 100.0 34 ............................... ATTTTATGCTCATCCGTCCATCCCCTGCGCCTCA 141167 30 77.4 0 ...................A.-...CAT.TG | ========== ====== ====== ====== =============================== =================================== ================== 12 31 98.1 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TGATGGCCTGCCTGGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCTGTGGTGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTATCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGGTATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : GGATTGTTCATAATTCGAGCAGAATGCTTTTTCATATACACTGTAGAATGCAGGAGCAACGGTTATGCTTCAACATTTCACGATGCTAAAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCTAAGGCCGGTTAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTTATCAGGCTTCCTGCCTTCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAGTCCTCG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 102522-101553 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKO01000003.1 Akkermansia sp. BIOML-A1 scaffold3_size142559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 102521 33 100.0 33 ................................. CGGAATCCGTTGCGACGCTGAAGGGGCCATGGC 102455 33 100.0 33 ................................. CCCCGGCAAAAGGAGGGGACGAAAAGACCTGGA 102389 33 100.0 35 ................................. GCGTTGAAGAAATACAGGTACTTGTGCTGAAGAAG 102321 33 100.0 35 ................................. CGGGTGTACTATCTCGCGCCTGACCTTAAAATTGA 102253 33 100.0 33 ................................. TTGCAGGAAGTTATTCCTGGTACTCCTGATGCT 102187 33 100.0 34 ................................. AGGCTGCTGCTGTTACGGAAGCAAAGGCGGCGCG 102120 33 100.0 33 ................................. CTGACGAACTCATTGAAGATATTGTACACCTGG 102054 33 100.0 34 ................................. CGGCAATTTTGTGTCAACTGACGTGCCGTTCAAA 101987 33 100.0 35 ................................. AAGACGTGGAGTAGCGTACTTGATAAATTCCGAAA 101919 33 100.0 33 ................................. ATGAAGCAGGAAATTGCAGTACAGGCACCATCC 101853 33 100.0 34 ................................. GTATGAATCTCCCACGCACTCTTCTGTTCCGTCT 101786 33 100.0 33 ................................. CGTGAAGGTGGAAGTGATTGACGGCGCAGGAGA 101720 33 100.0 33 ................................. ATAGGCTAGAGAGCGGACCGGCGTGCGGATGGG 101654 33 100.0 34 ................................. GAGAGGGAGGCGGATGAGGTGTCTGCGGAGAGCG 101587 33 81.8 0 ...................C....AC...T.CG | CG [101562] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTTTCTCCGGCCCAATTGGTTGAAATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGTGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCATAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAAGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTACCGTCTTCGTGAAGTTGGCGCAAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGAAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCTGCCTGGGAGTATTCTCCGTCCGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 113143-111032 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVKO01000003.1 Akkermansia sp. BIOML-A1 scaffold3_size142559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 113142 31 100.0 34 ............................... CACCAAAACACCACACCGACTAATACCCCTCGAC 113077 31 100.0 34 ............................... ACTTGATAGACGCCGTGAATTCGTCCTAGACACG 113012 31 100.0 35 ............................... GCGTAAAATTCAAACACCTGGATAACACGCTGATA 112946 31 100.0 34 ............................... GGGAACGCCAAGGTTCGCGGGGACGCCGAGGTCT 112881 31 100.0 33 ............................... ATACCACACGTTGTTGGGATCATCCTCAAAGCT 112817 31 100.0 34 ............................... TGCGTGCATACCGTAACGCAGGGGGCGTCCAGCG 112752 31 100.0 34 ............................... CGTTTCCAGCACGGGCGGGAATCGCGCGTTGGGA 112687 31 100.0 34 ............................... TCCGAATACCTCCGGGGCGCCAAACATGTAAGTT 112622 31 100.0 34 ............................... TCATTTGCAGGGGTCCATCCTTCCTTCCCGGATG 112557 31 100.0 34 ............................... TGGTTCGAACTTCCGCATGATAGCACCTTTCTGA 112492 31 100.0 34 ............................... CCACCTTACGCCTGCGGATGTTCACTACCGGAGA 112427 31 100.0 34 ............................... AGCTGTGCTACATAGCCCTGTTGTTTCTTCGTCG 112362 31 100.0 34 ............................... GTTCCTGTCATAGACAAGGAGGCTATCTACGCCA 112297 31 100.0 34 ............................... CGGCATCATTTGGAGTCATGATCTGACCTTGCCA 112232 31 100.0 33 ............................... TCTTGAACAGGCATTACTGTCTCAGGCTGAGCA 112168 31 100.0 34 ............................... TATGAAGCCTGGGATGAGTGGGCTAAGGAGTGGA 112103 31 100.0 33 ............................... CGCCGCCCGGAGGCGGCGGAAAAACCGCATCAG 112039 31 100.0 35 ............................... CAGGAGTTTTTCCTGGGCTTCCCTTCCGGCCAGGG 111973 31 100.0 35 ............................... AGAATTCGAAGCGGAAGTCCGATAATACTGCAAGA 111907 31 100.0 33 ............................... CATGTCCAGCAGCAGGAGGCGAATGACGCCGCC 111843 31 100.0 35 ............................... TGGATGCGGGAAGTCGTATTGGAAAAGCGCTCTCC 111777 31 100.0 34 ............................... ATCATGATGGATGGTAAGCAAGGCAAGGAATCCT 111712 31 100.0 35 ............................... GAGCCGCAAAGCGAGGACGGGCGTTTTAAAACGGA 111646 31 100.0 34 ............................... CCAATCTGTGCGGTCGGAAGTTGGAATTTTATTT 111581 31 100.0 34 ............................... ATTTTCATTTTTCAATTTGAGAATGGAGAGGTGA 111516 31 96.8 34 .............A................. TTTACGGCGGTGGAGTTTACCGGGTTGAAGAAGT 111451 31 96.8 34 .............A................. TTCCGGGCCTCTTCCGTTTGCTGCCCGCGCTGCG 111386 31 96.8 34 .............A................. GTATTGGGTAGAGAGCAAGATGGTGAAGGGAGGG 111321 31 96.8 34 .............A................. AACGGAAGTTTCTGGAGAAGGCGCATGGCCGCAA 111256 31 96.8 33 .............A................. GTTTAAATTATCCATATGATTTAATTCTATGAT 111192 31 100.0 33 ............................... GGCGAGAGAGTTCGAGCGTAGCGGCCAGAAAGA 111128 31 90.3 34 ....................C.A.......G TCAAAAAAGGGATCCAGGATCAAAAAGCTGGACA 111063 31 71.0 0 ......T...........TA.TT..AT..CA | A [111045] ========== ====== ====== ====== =============================== =================================== ================== 33 31 98.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAAAACGATCCTTCCCTCAAAGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAAGAACGCGTCGCCGTTAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGGTAATATGTTCCTTAGCGGAATTAAATATTGTAAATACTCCAAGGCCGTTCCGCTCATGGCGGAACGGCCTTCTGTTTTCCAGAACTTGTAATGAAAGGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAATGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGAAGTTCGGCGATTGCTGTAAGTCATTGGAAAACGAAGTTTGACATATCCAATTACAAAATTTAAGTCGTGCGGAATATCGTGATGGAGAGAAGTTGGCGCAAAAAGCCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCTCACGCT # Right flank : AGACAGAAAGAATCTAAAATGCTATTAAAACAATGAGTCCCCTCAATAGAATTTTCTAAAAACGGAAGTGTTTAGTAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTACCATATCATAGTATGAAGAAATAAATATTGCCCCAATTTTATTTAGAGGGGTTAGTTTACAAGGGAAAGGTAAAGTCTAAATTATAAGTAAATTCAAAGCCCGGCCTATTTTCAATGAAAATAGGCCGGACAGGAGAGATTAAAATCCATCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTACCATCATTATTGACAATGAGGCTTCTATGGACTTTTCCAGAAGAATATTGACCTGCAGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCCCCTTCAAACATAAAAGGAAGAGTATTTTTTAATAATTCTGCATCTTCATCACTAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //