Array 1 52882-53308 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831707.1 Neisseria sp. HMSC064D07 Scaffold692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 52882 33 90.9 33 NNN.............................. CAATACGTTGCAAATCGCCGCCGAGCCAAGTTA 52948 33 93.9 32 TC............................... CAACGTTACGTCTGGAAGACTGTCAACGATAA 53013 33 100.0 31 ................................. AGCCGAATAACGATGGTCGGGAACGATTTCT 53077 33 93.9 32 AC............................... CAAAAATCAGGACGGCAACGGCAATCAATCCC 53142 33 97.0 34 T................................ ACACCCTGCCATACGTTGATTTGCGGCATTTCGT 53209 33 97.0 34 A................................ ACGTTATACTTTTTGACGGCTATCAGCTTCCAAC 53276 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================== ================== 7 33 95.7 33 GGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : ACAAATACTACACGCCGCCATCTTTCGGATTTTGAAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGGTATATACAAAGCTAGTCAAGCATTTGCGAAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTAACACGGATTTACCCATACCGGGTCTTGCACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTATGATTACCAACGTGGGTTAAGCCTAATCAGGCCGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACATTTTGAAAAATTTCATTTGATTGCAAATCAAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGACGATTGGGGAATGTTTGACAAGCGCTATTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAATGGGCAATATTTATCCAATCATCCCAATGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTATTGTATTACGTCGCTTTCGTCAACGGTTGTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCATAAAAGTCCCCATCTTCAGACAACATCAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCACAATCTCTGCCAATTGTGCCTTGCCGTCTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTTCTTCATCCTTGCCCATTATGAACGCTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGAATCGCTGATAGGTCAACAATTCGTCATCGTCAGCCGCC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 53472-54812 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831707.1 Neisseria sp. HMSC064D07 Scaffold692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 53472 33 100.0 32 ................................. TTATTGTATTACGTCGCTTTCGTCAACGGTTG 53537 33 97.0 32 .T............................... AATCATAAAAGTCCCCATCTTCAGACAACATC 53602 33 93.9 32 AA............................... CCACAATCTCTGCCAATTGTGCCTTGCCGTCT 53667 33 97.0 32 .T............................... CTTTTCTTCATCCTTGCCCATTATGAACGCTG 53732 33 93.9 33 CC............................... AAAGAATCGCTGATAGGTCAACAATTCGTCATC 53798 33 93.9 33 GT............................... ATTGGAGCGTAAATCTAAATAAAGTCTTGAATA 53864 33 100.0 32 ................................. AGATATTGAGAAAGAAGAGTGCAAGCTTCTAA 53929 33 97.0 32 A................................ TACGGTGTGTTACCCGTCTTTGAAATGCTGAT 53994 33 100.0 33 ................................. ATAGAACAATCCTGCATATTGTCTTTTTGAGTA 54060 33 93.9 32 CC............................... TACGGTGTGTTACCCGTCTTTGAAATGCTGAT 54125 33 100.0 31 ................................. ATTTTTATTACCTTGTGAGTAGTATCCCTAT 54189 33 93.9 32 GT............................... AACACGCTAAAGACTATTTAGGCAATGGCCTG 54254 33 93.9 32 AC............................... GGCAATCTCTTGCTTGCATTGCTTGATGGCTT 54319 33 93.9 32 CT............................... TTTGTCGGTTAAATCCATTTTGTCGATAACCG 54384 33 93.9 34 AC............................... TTCGTCCGATAAATCCCATCCGAAACCGTTATCA 54451 33 100.0 33 ................................. CATGCGGCTATGACAGTAGAATATGAAACCAAC 54517 33 93.9 33 AC............................... GTCTGTCAGGTATTGGGTTAATGCTTTCATGCC 54583 33 93.9 32 GC............................... CCAGGCTGCCTAATAAAACCATGATTTAGTCC 54648 33 97.0 32 .T............................... GATGTGTGTATATTACCTCCTTAGATGAGGTA 54713 33 97.0 34 .T............................... CTTGCAGAATCTTGAGGCGTTGCTCGGTGTTGAC 54780 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 21 33 96.2 32 TGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACCAACGTTACGTCTGGAAGACTGTCAACGATAAGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCCGAATAACGATGGTCGGGAACGATTTCTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAAATCAGGACGGCAACGGCAATCAATCCCTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACACCCTGCCATACGTTGATTTGCGGCATTTCGTAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGTTATACTTTTTGACGGCTATCAGCTTCCAACGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAATGGGCAATATTTATCCAATCATCCCAA # Right flank : CGTTGTAAGTCAGTTATATCGCATATTATTTCCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGCGCATTTTTTGCAGCCAGCCTTTGGCAACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAGTTTTTAAAGGCCGAGACATCCGAACAATCGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCAGGAATTTTGTTTCTTCCTTTTACCCAACTATTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATTATTTCTGAATTACTTGTGATAACTTTTATCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCAAGAGGGCGCAGGCGAGAAAGAGGGCGATGCCC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 55042-55341 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831707.1 Neisseria sp. HMSC064D07 Scaffold692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 55042 33 100.0 33 ................................. CAGTTTTTAAAGGCCGAGACATCCGAACAATCG 55108 33 97.0 35 A................................ AGCAGGAATTTTGTTTCTTCCTTTTACCCAACTAT 55176 33 97.0 34 T................................ GATTATTTCTGAATTACTTGTGATAACTTTTATC 55243 33 100.0 33 ................................. ATCAAGAGGGCGCAGGCGAGAAAGAGGGCGATG 55309 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 98.8 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACGTCTGTCAGGTATTGGGTTAATGCTTTCATGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCAGGCTGCCTAATAAAACCATGATTTAGTCCTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGATGTGTGTATATTACCTCCTTAGATGAGGTATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGCAGAATCTTGAGGCGTTGCTCGGTGTTGACGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTGTAAGTCAGTTATATCGCATATTATTTCCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGCGCATTTTTTGCAGCCAGCCTTTGGCAA # Right flank : CAAAGTAAGGCATTTAGTGGCACAAGGTCGTCTAAACCAGCCGGCTGGGTGTTGAAACTCTGCCACCGTATCTTATGTCTGAGTAAGGAAGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTTGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTTATAAAGGTTAATCGATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATCTGTATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTCATTTACTACGCCCATTCCGCGCAAGATAAACTTGGTAATCTCTTACCTTACGAACATTGGCAAACCTTGCAAAGCCATTCTGTGAATGTTGGCGAAATGGCGGCGGAGTTTGCTCGGGTATTCGGTGCACAGGAAATTGCCTGCCAGACGGGACAGCTTCATGACTTAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //