Array 1 933526-937981 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 933526 30 100.0 37 .............................. GCACTTTTATATACACCTCTATGCCCCACTATTTCAA 933593 30 100.0 35 .............................. TGGTTCCGTCAATATCTATTTGTAGAACATAGACG 933658 30 100.0 34 .............................. CGTCCATAATGCTTTCAAGAGACTCGCGCATAGC 933722 30 100.0 36 .............................. CCCGAACTGCTAAGTCCTGCAGCAACAGCAGATCAA 933788 30 100.0 36 .............................. CCTATATTCCGGGGCCGATGTGGCAGCCTGCTGCGT 933854 30 100.0 36 .............................. GCGACTAATGCGTAACAATTCGGCAGCTTCGTCAGG 933920 30 100.0 36 .............................. AGTATTGACACTAATAACACGGTTCATGTCAGCGGC 933986 30 100.0 36 .............................. TTTTGCACCTCCTATATATACCCCGACAACTCGTAA 934052 30 100.0 38 .............................. CCTAATTCTACGTATGATTCAACTGTTCCGACAACTGT 934120 30 100.0 36 .............................. ACTTCAGAGAATAAAGCACCTTTGGCGATTTGTTCA 934186 30 100.0 37 .............................. GTATTTAGTGCAGCCTCTACCTGACTTAGCACGATAC 934253 30 100.0 37 .............................. AAGTATAATTGGAACGCTCTATACGAGGAATATAACT 934320 30 100.0 37 .............................. CAAGTACCTCTCCTCGCGGGCTTCCCGGCCCGCTCGT 934387 30 100.0 36 .............................. TAAATATGGACGAAGGGCAAGGAGAACCGTCAAGCG 934453 30 100.0 37 .............................. TTCCAGGTCAGTGCGAAGCCACCAGCCATAAAACAGG 934520 30 100.0 35 .............................. TGAGTATAAGGTCCGGAAATATATTTCATTACACA 934585 30 100.0 38 .............................. GATACTTTTCTGGACTGCTGCTGAAAACCATAAAAAGT 934653 30 100.0 38 .............................. GTAAGCATTGATGTGGGTTCGAGTCCTGCGCCCGGCGT 934721 30 100.0 37 .............................. TATTTAAATACTGATATTGAGGAGTTAGCGGGGCTGT 934788 30 100.0 37 .............................. ACCTTTGTAGGATTGCGTTTGCGGGAGGCAAGAGAGT 934855 30 100.0 35 .............................. TCCGGGGCTTTGGATAGCATGGTTGCTTTGGCCTA 934920 30 100.0 37 .............................. GAGTTATTGCAGCAGGTAAAGGTTGCTTGGGAGAAGA 934987 30 100.0 36 .............................. GTAACTGCAACCGTTGCGGAAATTCGTGCAATGGAT 935053 30 100.0 38 .............................. GGGGTGGCGTCAGCTTCAGCTATCAGGACACTTAGCGT 935121 30 100.0 37 .............................. TATGACATAAAAAGAAAATTACCGTAAGGAGGACTGT 935188 30 100.0 36 .............................. CTAACAAAACGTTCCAGATAATCGCAAAGTATGCGG 935254 30 100.0 35 .............................. TGCTACCCTACTTATGAAAATGGGAGTGCAGCCAA 935319 30 100.0 34 .............................. GATGGCGCTGTATGGAGTGCGGCGCCGGCGCATA 935383 30 100.0 35 .............................. TATATCTACCAGGTGACCAAGGAGGAATGCCTAGA 935448 30 100.0 36 .............................. AAAGTTCAGCGAACTTATGAGAAACCTCTAACCTGT 935514 30 100.0 36 .............................. TATTTAACACCTCCCTCTATAATCTTTGATTTTCTC 935580 30 100.0 35 .............................. CAGAGCAAGTGCTGCAGATACAGGCTGCCGGTGAT 935645 30 100.0 37 .............................. AAAATATATCTGTCATACATAGCGCCATTTTTAAACC 935712 30 100.0 35 .............................. ACGCCGGACGAAATTGTATCAATAGTTACAGCTTA 935777 30 100.0 36 .............................. GCTACTGACCCCGCTGTTATTGACGGAATTCAAGAA 935843 30 100.0 36 .............................. TATGTCTCCTGATTGTAAATTATTAGTATAGTCATA 935909 30 100.0 36 .............................. TGGCCTGTTTTTCCGGTCAGAATCAGACCGTCAGCT 935975 30 100.0 36 .............................. GGTGGTTCGCGGCAAAGCTATAAAACGAATCATACC 936041 30 100.0 35 .............................. TTCGTTTTAACCCGCTAGCAGGCTTTCTGCTGTTT 936106 30 100.0 36 .............................. AAGACAAACGCAGGCCGGTACTGGCCGCCAAGCGTC 936172 30 100.0 35 .............................. TTTTTTAAAGATGAACAAATGGTTATCATTGAGAT 936237 30 100.0 37 .............................. GATTAGCTGTTTAACAATGGAACAGAGTTTAATTAGC 936304 30 100.0 36 .............................. GACATCTTAATCTAAAAAACTGTATTTTTTAGCTGC 936370 30 100.0 38 .............................. TAACAGAGATCAAGAAGCGTGATTTGCTTTGTTATATT 936438 30 100.0 35 .............................. ATGATGAAAAACCTGATTTAATCAGGATTGTTGGA 936503 30 100.0 35 .............................. GGATTTGCACTCCTGGGCTATGTGTGTGCGCTGGT 936568 30 100.0 36 .............................. TTTAATTCTTCTTGGGTAACCATTCCGCTTATGCCA 936634 30 100.0 35 .............................. GCAATGACAGTTTGTTCCGTTAAGGAGGCATCAAT 936699 30 100.0 35 .............................. GACAACGGCAAGTGGGAAGAAAAATACACTAGGCA 936764 30 100.0 36 .............................. AATATTATGCCAGGAGTGCAGGAGGGGGACTGTCAA 936830 30 100.0 35 .............................. TCGACAAATTTGATTTTAGCTATTATGGCGATAAC 936895 30 100.0 36 .............................. AACAATATGCCAGTAAATTAATTAGATGCGAATACT 936961 30 100.0 36 .............................. AAGTTAGAACCAGAAGAGGTGGGTATAGCAGATGAA 937027 30 100.0 36 .............................. CGAAAAACTGTTGTAATACGTCCTGGGTTTTTGTAC 937093 30 100.0 36 .............................. GTGCATGTTGAAGTTGTAGACAGTAATGAAAAATTT 937159 30 100.0 36 .............................. ATGCATACCACATACATGATGTTGCATACGACCCTT 937225 30 100.0 35 .............................. ATGATACTTGAAGAGGGCATGGATTTTAAGCCTTT 937290 30 100.0 35 .............................. GGTGGTTCGCGGCAAAGGAATAAAAGCTGTCATAG 937355 30 100.0 38 .............................. TCTTCCTTAACTGTCTTGATGTCATGACACCGCTTACA 937423 30 100.0 37 .............................. GAGTGTTATGAGATCCTATGTGCTAGTATCTATTAAC 937490 30 100.0 36 .............................. ACGGTTCATCAGGTAAGATAATCCGCTTTGATTTTC 937556 30 100.0 36 .............................. GGGATAAGGTGTTTTTGACTTCAACGCTGCGGCCTC 937622 30 100.0 35 .............................. GGTTAATTGACACTAAAGGTCAGTTAATACGCCTT 937687 30 100.0 36 .............................. GGTCTAAGTTATTTGCAATTATTAACTATCGGGTGA 937753 30 100.0 36 .............................. ACGCATTACGAGTGCGTGAAAAGTACTTTTTTAGCC 937819 30 100.0 37 .............................. TGAATTAGCTCGTATCTTTTCAATCGGTACTGGTATG 937886 30 100.0 36 .............................. ATCAGATGCGGTAAACAAGGTAATACCTAGTAGAAT 937952 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 68 30 100.0 36 GATCTAATTTAGCCATAGTGGAATGTAAAT # Left flank : TTCCACCCTACTCACCCAATCTGAATTGCATAGAAGAGTTATGGAAATGGTTAAAAAATACAGCTATTTATAATCGCTTTCATAAAAATGCTTCAGAAATTCAAAAATCTGTTGACTCGTTTTTAGAGGAAATCAAATGCTGTTCGGAAGATGTGAAAAAGAGACTTTGCGTTTAATTTATAACGATATTTATTATTTCGGTTCTATATATATTTACAATAAGCTGAAATATAGGATTTGATGAATTCTAACGGAGGAATCTAATTATTTTACTAACAAATAGGATAATACTAAAGATATTATTTGTTCAGAAAAAAAATCTGTCGATCTCTGTTAGTGCAAAATACCATATAGATAGACAAGAGCTTAAGTTACGGTGCTTTTTAGAATATATTGCTTCAGATTTTATAAAATTAGGTGTAGAATAAACTCATGTGAATAGCAATCGACAATAATTATCTTTTCGTGTTTAATATTTAAGCACACCAACCTTGAGGGGT # Right flank : TTACCCACCTTCCGCAAGATAAAAATCTAAACCTGTAAAATAGTGGAGCATAAATAATATTAATTACAACCATAAAAAAAACTGATCCATAAACTGGAAGGATCTCTGTTTTTTGTGTCGAATTATCACTAATAAGAATAAATATTAGTGAGGGATCGTCATGGACTTACAACCTATTTTAGAACAACTAGCTAAATTACCCCCCGAAATATTGATGAAGATAATGCCCGAATTAAAAGTAGAAGTTCCGAAGGCAGATCCCTCAGGTGCAGTACTTATCGGTGTCTTTTTAGCAAGAAGCCTGGGCATCGGTAAAATAATTGACAACTTTATAGGCGAAGAATATGTTACTTATGAGCATCTACGTGAAGACAGAGCCAACGGTTCTAAATGTCGGGTAAGTACTGGTTTGGCATGTGAAATAATGGTTGGCGACATGCTGGGCAGAAATAAAGATCTCACCCGTTTATATAAATTTGAAGAAGCTTGTGAAAACTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTAATTTAGCCATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 940048-943825 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 940048 30 100.0 36 .............................. AATTTGAGGCTGAATTTGCCGAAAAGAAGGCGCAAA 940114 30 100.0 36 .............................. ATGCTAGGTTTATAGGGTTTGCAATTTTAAACTCTG 940180 30 100.0 39 .............................. TGCATATATTCGTTATCGTGAGCGTGGGGGTATGAAAAA 940249 30 100.0 35 .............................. TACAGTGATATTATACATCTACGCCAGGATTATTA 940314 30 100.0 36 .............................. CAGATTTAACTTGTGGTACTGTTTTATTTATGGTTC 940380 30 100.0 35 .............................. AAAGTAAAAATCGGCCCGGATAAAAAGCACTGGTG 940445 30 100.0 36 .............................. GGCTGTGTAAATGCCTCGTCCGTTCTCTCGGAAACA 940511 30 100.0 35 .............................. AACTCAGTCATTATTAGTCCGTTACTTCCGGTCAT 940576 30 100.0 35 .............................. TGAAGGAAAATGTCATAACATTCACGGTCACAGGT 940641 30 100.0 34 .............................. ATAAGTCACATTCAGTTTGACAAACGAACTTAAG 940705 30 100.0 35 .............................. TCGGCATAATGCTCTTTGACTACAACATGAATAAG 940770 30 100.0 36 .............................. TTTGCTGGCGTTGGTGTTTGACTGGAGCACTTGATA 940836 30 100.0 35 .............................. TCCACTGCCACGGTTGACTGAAAACCGTTACTGGC 940901 30 100.0 35 .............................. AGTACTATTAAACGCATGATCAAATTGATGTGCAG 940966 30 100.0 36 .............................. AATGATAACCACAAATACTAGCATTATCTGACTCAA 941032 30 100.0 36 .............................. TAGCCTATCACATACAAATGGGGATTTTCAGCCATA 941098 30 100.0 36 .............................. TAGCCTATCACATACAAATGGGGATTTTCAGCCATA 941164 30 100.0 36 .............................. TTGCACAGTCGGAAGGGATACTGGCTTAGAGGCCAG 941230 30 100.0 36 .............................. GTTTTTAATGCTACCAATTGACCTAGCGTATCCTGG 941296 30 100.0 36 .............................. AAGAGTCAACCCTCTCACCAACACCTCAACCGGCAG 941362 30 100.0 35 .............................. TATAACACCAGAAAGGAGGCAGAAGGGGCAATAAC 941427 30 100.0 36 .............................. AATGATGAACTTCGCATTTTTTATCTTTTTCACATA 941493 30 100.0 36 .............................. TTTAAAATCACTCCTTTTAATCTTTCATTTCCTCTA 941559 30 100.0 37 .............................. ATTACTCTCAATCATGTCATGGATTGCAAGCAGTAGA 941626 30 100.0 37 .............................. TCAATTAAAATAACAACCCAATCGTCTTCTAATTCTC 941693 30 100.0 36 .............................. TTGCCGCTGCCAGTTCCTCAGGTCGCTCTCGAATGA 941759 30 100.0 36 .............................. ACTATTTGGCTGTCGTTTTCAAAAATAACCTTCTCC 941825 30 100.0 35 .............................. TTAGCTTTTCTGATTTCACGAATTCTTGCACCAAT 941890 30 100.0 38 .............................. ATAAAGATCGGGTCGATAATTTTTGGAGTCAATTTAAA 941958 30 100.0 36 .............................. CCAGCAGATCCACCCACACCCCAAGGCGTTGCATAG 942024 30 100.0 35 .............................. TATTTTTATAGACGAATTTCAGGACACTAGCGACG 942089 30 100.0 36 .............................. GTGGAAGTGATTAACCGAGCTCCCGAAGACATAAAA 942155 30 100.0 37 .............................. ATTATTGTGGGCCAATGTTGAGGACGCGATAAACTTG 942222 30 100.0 36 .............................. GAAGGTGTTGTTACTGGTAGAATAGGGAGTTTATAT 942288 30 100.0 35 .............................. TGCGAGGCAGTTATCATACGTAATTATCTCGGCAA 942353 30 100.0 35 .............................. TCTTCCAGCACTGTCTTGCGTGAGTGGCATGAATG 942418 30 100.0 36 .............................. TAGTAACTAATTGTTCAATATCAACAGCTTCACTAA 942484 30 100.0 37 .............................. GTGCTTTTTGAAGTTGATCGCCCTTAAAGCCTGTAGC 942551 30 100.0 34 .............................. GATCGCATTGTGCAGCATGCATTAATGAGATCAG 942615 30 100.0 36 .............................. GAATAGATTAAGCCCGATGCGCTGATCGTCACCATA 942681 30 100.0 34 .............................. TATGCGGTGGCAGCGATCTTCGGCCTGGATCCTT 942745 30 100.0 36 .............................. GCGGTTTTTCAGTGCTGGTTACTCTGATTTTCCAGG 942811 30 100.0 37 .............................. ATGTTAAGGCGGTTTTTATCGTTGTATCATAATGACC 942878 30 100.0 36 .............................. CTTGAAGCGGAACGCCTTATGAACATGCCGGATGGT 942944 30 100.0 36 .............................. AGCATTTTTTCTCTTTCAATCTGCAGTCGGTCCGGG 943010 30 100.0 38 .............................. GTAATTATTCAAACAGAAATTGAAAATAACATGGTAAC 943078 30 100.0 34 .............................. TACATGGTGCAATATGATACGGCGGTTATTGGGT 943142 30 100.0 36 .............................. TTTATTAGCTGAACGATTAAGACCGTAAATAGTTGT 943208 30 100.0 35 .............................. CCGTCTGCATCCGTAAGAGCTGTTTCACGTTTGTC 943273 30 100.0 35 .............................. TCTATTTGTATTGCGATGTCGGCGGGTCTACCAGG 943338 30 100.0 35 .............................. CCCCATATCTCTTTTTATATAATCCACCCCATATC 943403 30 100.0 35 .............................. ATCTTAAAGCCGTAGGCTTCTTGAATTCCGTTAGG 943468 30 100.0 35 .............................. GTCAATTGACTGGGAAGCTCCTTGGGCTGTATTTA 943533 30 96.7 36 .............................G ATATCCATTACCGCAAGTTACTCCGCTTATTCCGGT 943599 30 96.7 36 .............................G CCGGATCCAAGTCACCGGCATCCACCCGCAAATCAA 943665 30 96.7 35 .............................G CCTCCCAAGGGCAGCAGGGATAAACCGTTTCGCGA 943730 30 96.7 36 .............................G CTTCTTTGGTGTAATAGTTTATCGGCATCACACCGG 943796 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================= ================== 58 30 99.7 36 GATCTAATTTAGCCATAGTGGAATGTAAAT # Left flank : CGCTATCGTGGTAGGAACGACATCGAAATCAGTTTTAGGTTTTTGAAGGGTTCTCTTGATTTACAACAAGTATTCCTTCGCAATCCTGAAAGAGTAGATGCCTATTGCTTTTTAAAAGTATTGGCTATGCTTGTGCTTAATTTAGCAGCCTGGCTGTTAGCTAAAAATGGCAAAAAGATGTCTCCCCAAAAATTACAGAGAGAACTTGGCGACCTAACTATCTCAGAACAAAGGTTGCAGCCTATTGGTATACACCATTGGAATGGGACGAATATTCCTAATACTATTGATGTATTGGTTAATCTGTTTAACTTACCACATCCACTTGAATTAATAGAGGTTATTAATTCAGCAATCAATTTTTCTTATCATATTGAGAAATGGTTTAAGGATAATTTTAGAAAATAAGGTTTGGCAGTGGTTCCCAGTTTACTGATCCCTTAGTGCGAAACCTGGGAAATTAGTAGACAAATCAGCCCGTTATTGGTTTCCCTTATGAT # Right flank : GTACATAAATCACCGATCAGCCCTTTTTTGACAGATCAATCCTTCGATATATGGAGCAAGGCTGCTGCGATAAACATAGGTTTTTTTCATGACAGCATCCCTCCCTTCACCTCAATGCCTTTCAGTGAAAGGGCACATTGCCTCATGGTATCACCATCTGTTGCCAGATATTTAAGGACGGTTGATGTGTCGCTATGACCGAGCGAATTTGCTATCGTATCAACATTAGTTTTGCTTTTAAGCATGCGCGATGCAAATGTTTTTCTGATGATATAAGCTAAAAGGTTTTACCTGAAAGCCGGCCCCTTTTTTCGTTTTACAAAAAGTCATATGACCTTTTCTTTGAAAGTCACTTGTATGCATCAATTCTAAACTATACAATATTTTAAATAATTATAATATTTTTAAGGAAGGCCTGTAAAATTTGGTCAACGAAATTGGAATTGAGATTCGGATGGCTCATTATCTTACATTCCGGACCCAGAAAAAACTGTTTCGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTAATTTAGCCATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 2198816-2202288 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2198816 30 100.0 38 .............................. TATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAA 2198884 30 100.0 35 .............................. ACTGAACGGCGATATCGTTGGCAGCACTAGCGCCA 2198949 30 100.0 36 .............................. GCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTT 2199015 30 100.0 37 .............................. TTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCC 2199082 30 100.0 36 .............................. AAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATAT 2199148 30 100.0 37 .............................. TTAGCTTTCATGCTATGGCCATTATATTTGCCAATAG 2199215 30 100.0 37 .............................. TTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATG 2199282 30 100.0 37 .............................. GATCGTATATTATTTAAATCTGCCGAGGTTAAAATTG 2199349 30 100.0 35 .............................. TTGGTGCACTAAAATGCCACGCGGCAATGTTTCTT 2199414 30 100.0 31 .............................. TTTTAAGGAGGTTAATTAAAAGTTTATGATC 2199475 30 100.0 35 .............................. CGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGG 2199540 30 100.0 35 .............................. TATATCAGGTGTTTTTACTAATTTATTTGTAGCAA 2199605 30 100.0 37 .............................. CGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCG 2199672 30 100.0 37 .............................. AACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTA 2199739 30 100.0 37 .............................. CGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAG 2199806 30 100.0 36 .............................. TTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATT 2199872 30 100.0 35 .............................. TCACATTTGAGCCTAACGGCATTCCGGCAATTAAG 2199937 30 100.0 36 .............................. TAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTA 2200003 30 100.0 37 .............................. ATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAAC 2200070 30 100.0 37 .............................. CAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGA 2200137 30 100.0 37 .............................. TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA 2200204 30 100.0 37 .............................. TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA 2200271 30 100.0 35 .............................. TTTAAATAATCAACATGCCCAACTTCATGTAATAA 2200336 30 100.0 36 .............................. TATTAAATATACTTTATTTAAGTTAGAACAAAAAGT 2200402 30 100.0 36 .............................. ATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATT 2200468 30 100.0 37 .............................. TACTAAAACGTGCTTCCCATCTTTTTATAATATTCAA 2200535 30 100.0 36 .............................. TAGATATAAACTTATAAACTTATAAATTTAAAAGGA 2200601 30 100.0 36 .............................. ATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGC 2200667 30 100.0 36 .............................. TTTAAAACTTTAGCCACCAACCCCGGATCAAAAACA 2200733 30 100.0 37 .............................. CTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAG 2200800 30 100.0 37 .............................. TTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATC 2200867 30 100.0 36 .............................. ATAATGACTATTGGAAGGACAAGATAGACCATCTAG 2200933 30 100.0 36 .............................. ACGGGATAAGCTACACAGATGCTCAGTCTATGGATA 2200999 30 100.0 37 .............................. TTACTGATCGCACATCTTTGTCATCTGTGTAATCAGG 2201066 30 100.0 38 .............................. CATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTA 2201134 30 100.0 36 .............................. AAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAAC 2201200 30 100.0 35 .............................. TCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAA 2201265 30 100.0 36 .............................. CCGGAGAGAATTGACCGGACTATAACAGTTAAACTG 2201331 30 100.0 38 .............................. GAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTAC 2201399 30 100.0 36 .............................. TCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTG 2201465 30 100.0 36 .............................. TTTCATTTTCACTGTATTCTCTGATATAATCTGCAA 2201531 30 100.0 35 .............................. ATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAG 2201596 30 100.0 37 .............................. CCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGG 2201663 30 100.0 38 .............................. AACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCG 2201731 30 100.0 35 .............................. GGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATA 2201796 30 100.0 35 .............................. CATCATACGGTAAATATGTTTCCGAAATTAAGTGT 2201861 30 100.0 35 .............................. CCTACGACATATATTCTCACCTTCTGCCCGGGCAG 2201926 30 100.0 36 .............................. CTTAGGGATGGTTCTTCAGGAACAATATTATTAACA 2201992 30 100.0 37 .............................. TTGTTTTTTTACCATCAGACATAATAATGCTTTCGTC 2202059 30 100.0 36 .............................. TTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTA 2202125 30 100.0 38 .............................. TCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACC 2202193 30 100.0 36 .............................. TTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCT 2202259 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 53 30 100.0 36 GTTTTTAGCCTACCTATAAGGAATTGAAAT # Left flank : TGGTTTTCGGCATGCTGCCTACAGCATTGTCTTTAACCGAGGGCGCGGAAAACCGCAGTGGGATGGCAGTGGTGCTAATCGGAGGACTTTTGAGCTCAACGGTATTTACACTATTTGTTATTCCGGTGGTATATACTATTATTGATGATTGGAAGCACAACTGGCATGAACGGAGAAGGAATAGGCTGATTAAGAAGGGTTTGGTTGTGGATAGTTCGGTGATTTGAGACTGAAGTGCAAGCGGACGGGCTTAGGGCCCGTCCTTTTTTTGCGAAATTCATAAAAAAGTTTTGAGACCGATATATAATTTACTCTCAAGTAAGTGCTGAGTATTGTCGTCGATCCCCGGTAGTGTAAATTTTCCGGCAGATCGACGACATTGTTTTGTGGCCTTTAGGTACTAACATATCTAACTTTTGATGAATAATGCTAAGTAAAATACTTGTTTTAACTGTTTATTTGATGTAGACTTAAAAGTAGATATTCTAAGGTTTTAGTGG # Right flank : TCGGCTGCTTAAGGTGGACCCCTTGGTCAAGACAAATTTTTTTATGATTTAAGATACCAAGGGAACCCCCTCTCTTTTCCTTGATGTTTTATTATTGATATGATGTTTTACTTCTTATCGCCGTGGTTGTGGTCAGTGTGGTCAACGCGAAAGCGTTGTCCAAGTCCTGTGGTCAACCTGGTAGGGTTGTCCACAGGACGTCACTGTCCACAGTCGGTCTTTCGAATTAATCAATTAATTAGTAATATATTTCAAACGGTGTCTTGTAATCCAGCGACTGATGAGGCCTTTCGTTGTTGTAGAAATCTATATACCGTCTGATCCCCCGTCGTGCCTCTCTGGGGCTCATGTAATCGTTCAGGTAGACTTCTTCATATTTAATTGAACGCCAGAGCCGCTCTGTAAAGATATTATCTATAGCTCTGCCTTTTCCGTCCATACTGATCAGAACACCTGCGTTTTGCAGAAGTTGTGTGTATTGCGGACTCGTAAAATGACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2203726-2204020 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2203726 30 100.0 35 .............................. AAAACATGCAAGTTAACATACATAAGGAAATAAAT 2203791 30 100.0 38 .............................. CTTGACAGAACACTGCGGATTGACCAGATCCACAATTG 2203859 30 100.0 36 .............................. AGTTTTTCGGCAACCGGCACCGAAAGGTAGCTAACA 2203925 30 100.0 36 .............................. TTTTTTCACAATATTACACCACGGAAAGGTGGTGAA 2203991 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 36 GTTTTTAGCCTACCTATAAGGAATTGAAAT # Left flank : GCGGAAGGAGGTGCTGGCTTGTAATAGATCCTTGTCCGGTTTATTCCCAGCAAGTCAGCCTGTGCAGTCAAGGATATTTCTTTATTGTCTGGTTCTACCAGTGCCAGACGCTCTTCTTTAGTCAGATTTAATGCCAGATTTTTTTTTCAACCACGTCAATTGCGTGGTTAAACGACCAATTTCGGCGTATAGCTCGTTAACCTTCTTCTCCTCAGCTGCCTTTGCTGCTCTGGCTGCCCTGTGCTCATCAGAAAAAAGGGTTGGCAATTTGTCTATTGCCATTGTCTTCCATTTTTTAAGCTGAGTTGGGTGAACTCCCGACTCCGAAGCAATTTGAGCAATTGTTTTTTCTTCCTTCAGAAGCTCAAGAACAATTTGAGCTTTGAAGGTGTCTGTGTATGTTTTTCTCATGTCTTAATTGTATCTTAAATTCGACCTTTTTGTTGTCCGATTTCCTGGGTCCATTATAGCTGATTTAAAAGTTTCTAGTACTTTATTTT # Right flank : TACAGCTTCCATTAGTGCGTTTTGGCTAAGGGCATGATTTTTCGGCAATGCTCTATATGGAGCCAAAAACGGATGAATGGGGCAAATATGCTGATATAAGGGTCATTAGAAATGCTGAAACAAACGAAGTGGAAAGCATTGTCATAATGTCTGAGACAGAAGCAAATCAGGCAATTTTAAAGAATATTGGCCCGGAACGCTAAATTTGAAAGGTACATACACTTTATGAATAAACGAATATCATGTTTTATCAGTTTGACACTAATACTTATTTTGCTTTTATGTGGTTGTATGCATAAGGAAAGTACAGACAAAGACGAGGGTTTATCGCACATCTATTCAGAAAACACATACGGATATTACTTTGACTTTTACACTGCTGACAGCAAAGACAAAGATAGGAACGGTACTATTACACTAAATGCGTATGATGATGATATGTTCTTTGAAGTTGAAAACTCTGGAACCGAACGCGAATTATCGTTACAAATTTTTGTGGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2217925-2219152 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2217925 30 100.0 36 .............................. ATTCGTCAAAGCGTGAACCGTCGGCCATTGTACCTT 2217991 30 100.0 38 .............................. TTTCTTTTATGCTCATTGTATCATAATGATCATTGATA 2218059 30 100.0 37 .............................. CTAATTTCTCAGGATTCGCTTTCGGTGTAATCATCAC 2218126 30 100.0 37 .............................. ACTAATTTTGAATAAAGTTTTAATTTAAACTACTTTA 2218193 30 100.0 39 .............................. ATAGTGATATTAAGAGGTTGCGGGAGAAAAATTATAAAG 2218262 30 100.0 36 .............................. AAAAATTTCCGATTAACTTTAAGACTAATGTAAAAA 2218328 30 100.0 36 .............................. GGTGGATTTTCTTTTCAGATAGAAGGGCTAATAATA 2218394 30 100.0 36 .............................. CTGGTTTTCCCGGGCGAACGGTGGCTTCTATTTTTG 2218460 30 100.0 35 .............................. TCTTGCTAACTTGCATCCACTGATTGCCAGTAATC 2218525 30 100.0 36 .............................. ATTTTTCCATCCTACTCTCATCCAAGAGAGTAGGAG 2218591 30 100.0 36 .............................. ACTGAATTAAGTAAGAGTGTTTTTAATTTAGGCAGA 2218657 30 100.0 37 .............................. ACCAGATGCGGCAGCACTACTATCAGGGACGGATAAG 2218724 30 100.0 37 .............................. TAAGCAAGTTTGTTCAACTCCTGCCGGAAGAAGTGCA 2218791 30 100.0 36 .............................. CCCCGGACTATGTAGCAGATATTATCCTTCTTGTGG 2218857 30 100.0 35 .............................. CCTTTAACATGCAATTCAAAGATTTGCCTTGCGTA 2218922 30 100.0 36 .............................. GTCTGACTGGTATTCAACGAAGCCATAACCGGGTAC 2218988 30 100.0 38 .............................. CCTGATCCATACAGCTACACATCCTCCCTAATATTGAA 2219056 30 100.0 37 .............................. TCCCCTTTGTCACCACTCTTATAAATGCCAAGTATAC 2219123 30 86.7 0 .................A........GTG. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.3 37 GTTTTTAGCCTACCTATGAGGGATTGAAAT # Left flank : AGTTCTTTCTATCCTTTTTCGTCCTGGGTTTATACGGTTGATTATGCTGAGTTCTAAATCCAAAATCTGTGGTAATACGTTTAAGTGATTTGATTGAAATATTTTAGCATTATTATAATAAAAACGTTCCGGAATACGTATTTTAAAATGGCTTTAAACAGCGCATCTCCCATACAAGGCCAGTTTTCATTAAAATAAAATTCAGATTAAATAATACCAAAGGTATAACTGTCAATTACTGCTATCAGTCTTAAACGCCGTTTTTTATTTTTAACGGGAGCAAGTATACTCGGCCCATCCCAAATATCACAAATCCAACTCATTGCTGAGTATTGTCGTCGATCCCCGGTAGTGTAATTTTTCCGGCAGATAGACGATATTGTTTTGTGGCCTTTAGACACTAATATATCTAACTTTTAATGATAATGCTAAGTATAATACTTGTTTTAACTGTTTATTTGATGTAGACTTAAAAGTAGATATTCTAAGGTTTTAGTGGG # Right flank : TGAAAATTAATTGGCTGTGGAATACCTACATGCTTAGGTAAACGGTAGAGGTTCTGTCGACACGGAGATAAGATCAGGTAACTTTAAAAGGTTAAGTGTTTGGTTGACGAGGAAAAAAGGTTTCGGGGTTAAAGAAAGCAATAGCAAAGCAAGGCCATCCTTCGAGGAAATAACGGGCAACCAAACATAGAAGATAAGAAAGGGAGAGAATGGTTGCGCCACAATACCCCGTAAATTATGCTTGAAGCATGTAAATTGGTGTTCCTTTTTTTATTATCGTATCCTTTTGAAACTTCTAGAGCTATGAAACATTTTCATTGACGTGTGGGCAAGATCATGCGGGTTTGTCTTAAAATCCCGTATTTTTTTATACCTACAAAAAATACTAAAACGCCTATAAAATCAAGGATATTATGATTTTATTTGTTTGCTATGATTCTTTTCTTGAAGCTTCTTCTGAACCTTATTCCATAAATCGTCTTCAATAATAACTAATTCAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3162075-3161589 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 3162074 38 100.0 36 ...................................... AAAACCGCCTTCATTTAGGCGGTTCCTCACCTCTAT 3162000 38 100.0 36 ...................................... AAAACCGCCTTCATTTAGGCGGTTCCTCACCTCTAT 3161926 38 100.0 37 ...................................... ACATAATGCTACTTGATATTCAAGATCGGATAGTAAA 3161851 38 100.0 38 ...................................... CAATAGTTTTATATGTAACAATTTTAGCTTTTACAATC 3161775 38 100.0 37 ...................................... GGACATAAAATCCAAGAGCCTTTAATCTTCGCTGACG 3161700 38 97.4 37 .....................................A TAACCATTTATCCGTCTAATGAAATCCATCTCTTCAT 3161625 37 94.7 0 .......................-.............C | ========== ====== ====== ====== ====================================== ====================================== ================== 7 38 98.9 37 GTCTGAAAACAAAATAATTCCCATAGGGAATTGAAACT # Left flank : GGTAAGCGACAGACCGAATGATTTTATGGAGCAATTAACTAAAAAATGGTTACCCCGCCTGGAGGAAGCTGAGCCTGCAGAGCGTCTTGAAATTGCAGCTATACTGGCTGAGTGGTACCGGAAAAATAAGCCGAACGATTGGAAAAAACCGAAAGGGAAAAACAAAGATAAAGTGGAGAAAATAAAATCGGTATTAATGTGAAATACGAGATTGCACAGATTATTGCTCTTGATCATTACAGCTGGATTAATGCTGGTATGTATTTTAAAGGGGAGGAGAGATTTAACCAATAGTAGAAAGATACTAAAAAGATCGAGCGTCGTTGGTGTGCAAAAAAGCCGGGGGTTGCTCGATCTTAAAAAATATCGTTAATTATGCGGGTTATAGGGGTTTACAATGATGACTTGTTTGATGTAAAATAGATGAAAATATGAAATTATTTTAGACGCTCGCAAAATGGCTTTGTAGGCCTTGTATTTCAAGGCTTATAGCGGGCAGG # Right flank : TCCTCATCCTCTAATTCAAGATTATCACCTCTATACAAACATTTCCACAAGAAATTGAAACGTCCGTCTTATAGGTTCTGTGAGTAGAAAATTATATTCCCTAAGTATATTAAACATCCATAAAGGCAATTATATTGGCACTATATGTTAATTAGGAAGTGACTATTATGGATGAAATGTGTTGCGATTCACAGTATAAATATCTACCTGTTTCAGCTGTAGCGGAAATTCTTTATTGTCCGAGAAACTTTTATTATCGTATTGTGGAGGGCGCTAAAGAGTATAACGCTCACCTTTTAGAAGGGCAACTGCAAGAAGAAAAACGGAACAATCGTTTAGCAATAAGCAGAGAAGAATACCAACAGAATAAGTCTGTTATGGTCTCTTCTGAAAGACTGCGGCTAATCGGAGTATTGGATGCGGTTGAAGAAGGAGAGGATATTTATCCTGTAGAGTATAAAAAAGGTGAACTCAAGGAAAGTCTGAATGATGACGTTCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAACAAAATAATTCCCATAGGGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 7 3171998-3171661 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3171997 37 100.0 36 ..................................... TTAATAATTACCTCCTTAATCAATATTCCTTATCAC 3171924 37 100.0 37 ..................................... GATTTAAAGTACGCTGCTAATACTATGCCTTATATAT 3171850 37 100.0 39 ..................................... CTTGCTCAGACAACGGTCCCGGTTTATTGAGTATGCAAT 3171774 37 100.0 39 ..................................... TACGGTATCTCCTGCTCAAGCCATTTATTTGCAGCCGTA 3171698 37 75.7 0 G.............C....G..A..TAT....T...A | G [3171667] ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 95.1 38 ATCTGAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Left flank : TGCCAACGGACAGTTTATTTTATTTTCTCCTAATTTCACATAGCGGTAAAGATAACTCTTTAGATAAAGTTAAGCAAATGTTTAATGAGTGTCCTTATCTTCAGATTGGCGGGAATGAAACTGTGGGACAGGGTTGGTGTGCGGTAGCTTGGCCGGAGAAACAGGGAGGTAACAAATGAGTAAAACACTGGAACAAGAACGGGCAGCGGATGCCTTGCAAAAAGTGAAAGAGGTGAGACAGGAACGTAAGGAATTGCTATGTGTTTTAAAGGGGAGGAGAGATTTAACCAATAGTAGAGAAATGCTAAAAAGATCGAGCGTCGTTGGTGTGCAAAAAAGCCGGGGGTTGCTCGATCTTAAAAAATATCTTTAATTATGCGGGCTAGAGGGGTTTACAATGATGATTTGTTTGATGTAAAATGGATAAAAATATGAAATTATTTTAGACGCTCGCAAAGTGGCTTTGCAGGCCTTGTATTTCAAGGCTTGTAGCGGGCAGT # Right flank : ATAAAATAATTCCTATACATAAAACATTCATATAACAATCCTATATCCCAAAAATTCAAGGTTAGGTAAATACATTTATAAATTTCTTAATTTAATTGAGGTTTTTCGAGTCAGTTGCTTTTCAGGTAACTGGCTTTTTTGTTCTTCTGGATTGTACAAAATTAAATATATTTTAGACTACATCAATCTAAAATATATTGGTTACTTTTGCACAAATCATTAAAGAATGAACGTCATGTTGTATATACGTCTCTGACTGGAAAATATTTTACCTGGCTGGTTAGCTATAATTGTGTAGAGTAATGACAAAAAATTATTATTATTTTGCGGGATAGGGGTTGATTGAATGGGGGTTTTAGACATTTTTTCTAAGAGAATAATTAATGGTGCAGCAATGGTTGTAAAACAGGTGTTAATCTGGTAGAAAACTTATTCGAAGGACTTATTGGCAAGAATGAGTTACGAAAACTGTACGTGAAGTAGGTTATGCGGTGGCGGTA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 8 3199659-3189932 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3199658 30 100.0 37 .............................. TTGCTAACTGTCTCAGTATCCTTTTTTCTTCTTCCTC 3199591 30 100.0 36 .............................. TTATTGTGAGCCTCCTATTAAATATGTATTAAATTC 3199525 30 100.0 35 .............................. TTGCTATATTTTTTCTTTTCTCCATTCTTTTCTCC 3199460 30 100.0 35 .............................. TTTTTATCTGTTCCCCAAATGTGCTTTATAATTGT 3199395 30 100.0 37 .............................. AAAAAGAAGGAATTTAAATACTGAACGTCGAATATAA 3199328 30 100.0 35 .............................. TCATTTCTGTTAATCTTGTTTGTACATTATGTTTT 3199263 30 100.0 35 .............................. TCTAAATAAACGGTTGTATTAAGCATAATATCCTT 3199198 30 100.0 36 .............................. ATTCTTGACTTAGATTGGGCAACCATAAATGGCTGA 3199132 30 100.0 35 .............................. ACCTGTGTTGTTGCTTTAACCGGTATTGCAAACAC 3199067 30 100.0 36 .............................. AGGTTTGGGCGCTTGGACAATGTATCGAAATGGTGA 3199001 30 100.0 36 .............................. ATTGGAGATATAAAATTAGCTAAAAAAGCTGTTTTG 3198935 30 100.0 36 .............................. AGATATATAGTGGCGAAATGCGCTACAAACAGTCCC 3198869 30 100.0 37 .............................. GCGGCATTGTTATTAGCCAGGACTTGAATTTCACCTT 3198802 30 100.0 35 .............................. AATGTTCATGTTAGCGTACCGCTGACCAATATTTC 3198737 30 100.0 35 .............................. TATTTTTGATTATATTTACCCATCAGAGTGTTTTA 3198672 30 100.0 36 .............................. AGCAGATCAGCTTCCGTCTGCAGTGGGAAAATAACC 3198606 30 100.0 36 .............................. ACGTATTAGTTGCACCAGTTAAATCCATTGTTTCGT 3198540 30 100.0 37 .............................. TACAATCCCCATTGCTAAGGGAATATTTTTCTATTTG 3198473 30 100.0 37 .............................. TTATTTAATATTGGAGGATCTGGATGCTTTGATGGTC 3198406 30 100.0 37 .............................. GGGATTCTATTTGGCAAGAGGCTGGAGATATGTATCC 3198339 30 100.0 37 .............................. ACAATTGAAGCCATTTCTTCAAGTGTTGACTTTAGAG 3198272 30 100.0 36 .............................. CCCATACGAAGCTTGTATACTATCTCGTGATAGCTC 3198206 30 100.0 36 .............................. GGCTTTACCTCAATTAGACCAGTTATTTCACGTTTC 3198140 30 100.0 37 .............................. TTAGGTTGGGCACCGTTATGCCACTTGCGGCGGTAGT 3198073 30 100.0 36 .............................. ACACAAAAGCATTGTATAGTGCCTCAATTAATTCAG 3198007 30 100.0 36 .............................. CCGTCCGGCAGTTTTACTGTAACCGGGGGCAAGTCC 3197941 30 100.0 36 .............................. CCGTTAATCATTGCTGTTCCGGCTTCTCCGTCACCC 3197875 30 100.0 36 .............................. ATTCTGCGTTTTTCGTAGTATTCTTTATCCGACACC 3197809 30 100.0 36 .............................. CAGCTGATCGTCTGGGAATAAGGTTGCCCCTGCCCC 3197743 30 100.0 37 .............................. TGCTGCCCACCTCACCATGCAGCAGGCACCTTCTCGG 3197676 30 100.0 36 .............................. TCACCGGCAGCCTGTATCTGCAAAATATTCTCGGAA 3197610 30 100.0 36 .............................. AGATGGAGCAAGTTTCTAACGACCATGTCGGTATCA 3197544 30 100.0 36 .............................. ATCGGCTGGAAAGACACGCGCAAAGATGACGGTGAA 3197478 30 100.0 36 .............................. TCAATAGCTTCAGATAACAAATCAAGTGGATATTTC 3197412 30 100.0 35 .............................. GTTTGATATTCAATTCTGTATTCCATATCTTTAAG 3197347 30 100.0 37 .............................. TCCCGCTGTCATGGAATTTAAAAAAGGCCCCTGCACA 3197280 30 100.0 36 .............................. AAAGCTTACTGCAACATAAACATGATGTACGACTAC 3197214 30 100.0 36 .............................. ATTCCTTCGGTAATCCATGATACGGTCTATTTTGAA 3197148 30 100.0 37 .............................. GTTTTTCTATATACAGTAAGTAACCGGCCGGGGAGAG 3197081 30 100.0 36 .............................. TGGAAATTGGTGAGGATAACCGCATTACCGACGATG 3197015 30 100.0 35 .............................. CCAATTAGATTTGCTGTTATAATTACCTCCCTGCT 3196950 30 100.0 36 .............................. TGTATTAGGCTGGAAACCCTGATTTCCTGCAACCCC 3196884 30 100.0 36 .............................. AATAAAGGCATCGTATCTCCTCCTCAAAATGGTATA 3196818 30 100.0 36 .............................. AAGTATACCAATCCCACAAACCTTTTCTGTATGTCG 3196752 30 100.0 36 .............................. TGAGTATTACCAGATACTTTTCTGGACTGCTGCTGA 3196686 30 100.0 36 .............................. TTCAGGACTAGCTGCCTGCACTGCTGCCTGGCAACA 3196620 30 100.0 37 .............................. CCCTCTAAATATCCAGGCCCACCGCCACAATCAGGGC 3196553 30 100.0 36 .............................. TGGCTTCCCAAGATACATTAAAAATCCTCTTAAGTC 3196487 30 100.0 36 .............................. AGTGGTGGGTCGTTAAGGAAATGAGCAATTTAGATG 3196421 30 100.0 36 .............................. TCCAAAAGGTGAATATATCAGCAGCCAAGCAGGATA 3196355 30 100.0 36 .............................. TCAATTTCCCCTGCAACTACCCCGATTGAATAGCAG 3196289 30 100.0 36 .............................. TCAGGTACAGCGAAGTTACCTTTAAGATACCAAAAA 3196223 30 100.0 36 .............................. ATCATTCTTATATTTCAAAGATATGTAAAGGTGAAA 3196157 30 100.0 36 .............................. ACTACCCCCTGTGATAGTGGTGTGCCAGTCAGAATA 3196091 30 100.0 35 .............................. AGTTCCGCTTTCAATCCATCTTTAGCCTTAAGTTT 3196026 30 100.0 35 .............................. GCCATAAGCGCATGGAGCAGGCATTATATAACGCC 3195961 30 100.0 36 .............................. TTTTAACCCCTCCCTCAAAACTCGTTTCCGTGTTCT 3195895 30 100.0 37 .............................. AAATGTAGTTCCGGAGGAAATGAACATTTATATGGCA 3195828 30 100.0 37 .............................. TAAGCTTTATTGTTACAAAGTTACGATAAGGGGTACT 3195761 30 100.0 37 .............................. TTGAAAGTAATGCTTAAATTACCAATTTTAAAATTAA 3195694 30 100.0 37 .............................. TACCTAATGATTATAAATGGTTTTACGATTGGTTTGA 3195627 30 100.0 36 .............................. CTGTATGGAAATGTGTATATTTTACCGTTCCGCATT 3195561 30 100.0 36 .............................. CTTACTGACTGCTCTTTAATAGCCTCCGAATCGTAA 3195495 30 100.0 36 .............................. TGGCATTTTTGTCTTATGTACTGAATGCGCTAACAA 3195429 30 100.0 36 .............................. GTGTCAATGTAAGCTTCTGTTTTGCTATATGGTAGG 3195363 30 100.0 36 .............................. GCCATAGCATTTAAACGGTTCATCACCGCCTGAGTA 3195297 30 100.0 36 .............................. GTTATTCTAGCTAGCACGGGTTCGTTAACGAAATAT 3195231 30 100.0 37 .............................. CGGTTAATGTGTTGCTCAAAATCATTTCTGACATCCC 3195164 30 100.0 35 .............................. AAAACACCTCCTTTTTTAACTACACCGGCTTATGG 3195099 30 100.0 36 .............................. ATGCCTCAAATACCTTAAAAAATGCGTTTCTTCCGG 3195033 30 100.0 36 .............................. TAAAGTAGCGGCTAATACTTATATCAGCACTATCAA 3194967 30 100.0 36 .............................. CACAACCCAAACACACTTATTATATAAGCTTCCCTG 3194901 30 100.0 35 .............................. GCGTTGGTTCCAACCCCAGGCATCCGCGCCATGCC 3194836 30 100.0 36 .............................. CCTTGATACATTACGTTAATTAATTCTCCAGATTCT 3194770 30 100.0 35 .............................. AACAATCAATAAGAAGGAATCTAATGAAAATATTA 3194705 30 100.0 35 .............................. GTGTGAACAATTATAATTATATTCTATTCATTATC 3194640 30 100.0 37 .............................. CCTCTTCTAATACCAGTATTAGCAATCAAATATATAA 3194573 30 100.0 37 .............................. GTCATAATCTTGCGGCAAAATTCTTGAACATTTCTAG 3194506 30 100.0 37 .............................. TTGCATAATGTCTTTTTAAGCATTGTTTCAATATCAG 3194439 30 100.0 37 .............................. CTTTTATGGGTACGGTTATTAAGCATAAATACAATAA 3194372 30 100.0 35 .............................. GTAGCACCTTCCGGTAATCTTGACCCGCGATACTG 3194307 30 100.0 35 .............................. TTATTAATGTTACTCATGTTACCAATTTCAACTTC 3194242 30 100.0 36 .............................. TTAGGTATAATTCCATAACCGGGAGCTTTCTTTTTT 3194176 30 100.0 35 .............................. TTGTATGACCTCCTTATATTTGGGTATTAATTAAA 3194111 30 100.0 36 .............................. ATTTACCCATATTTAGTCTAAAATCTTTCATTCTGT 3194045 30 100.0 36 .............................. ATTGGAGGCTGCAAAGTTTTTGCTTGAAAAGAAAAA 3193979 30 100.0 37 .............................. TCAGTTGAATACGATCAAGATGAAGAATGCTGGATAA 3193912 30 100.0 36 .............................. TCAGTTGAATACGATCAAGATGAAGAATGCTGGATA 3193846 30 100.0 37 .............................. GTTGGTTAGAGATTGTAAAAAAGGTAAAAGTTAAAAG 3193779 30 100.0 36 .............................. GGTATAATGATACCTGTATTTGCTTGCTAACCCTCT 3193713 30 100.0 36 .............................. CACTTTGTGTGTAGTAATATGGTGTTTAAGAAGTAC 3193647 30 100.0 37 .............................. TTTACAGATATTATCCAGTTGGTTAATAGGTTATCAA 3193580 30 100.0 35 .............................. AAATCATTAAATATTACAGTGTCTGAGGCTGTTAA 3193515 30 100.0 37 .............................. ATGCTCTGCCGACAGATGAACAGGAGAAAATTCTTAT 3193448 30 100.0 36 .............................. TACACAATAGCACTCATATTTATTTATATTACGAAT 3193382 30 100.0 36 .............................. GAATGAAAAGTTTACATAGTTAATTTTAAAATGGTA 3193316 30 100.0 36 .............................. TTTAATGATTGTCCAATATATGATAATTTTGGCGTT 3193250 30 100.0 36 .............................. CCTCTTAAGGATGGTACTTACCATCCTTTGTTTTTT 3193184 30 100.0 36 .............................. CACGGTTCCAGTCGGTTAGTAACATGAAGTCCCTGA 3193118 30 100.0 37 .............................. TTTTCATTAGCATCTGTAGTTATATTTAAAGATCCAC 3193051 30 100.0 35 .............................. AGCAGTTCTGATTTTTTTGCGTTGGTCAATTGGTT 3192986 30 100.0 34 .............................. CCCTAAGCTCTGCCTCCACATATGCTTTAATTTC 3192922 30 100.0 36 .............................. TGAAATCACCTTCCCGGGTATTATTTTGCGCCAGCA 3192856 30 100.0 36 .............................. TTGTTTGGTGGGTTACAGAAGGTTGTAGGTCAGTGA 3192790 30 100.0 37 .............................. AAGAAATACTGACCATCATAACAGTTGGATGAAAAAC 3192723 30 100.0 36 .............................. AGTTTCACGTTATGAACGCTGGCATGAGGAAGGGTA 3192657 30 100.0 36 .............................. AAGGAACAATCGCCTGAGCTTCATTAACAGGCGCAA 3192591 30 100.0 35 .............................. ATATCAGCATGATGCCAAGGCTGCTGCCCAGGTTG 3192526 30 100.0 35 .............................. GAATACCAATCTAAAGGTATTTGTTCACCTTCTAT 3192461 30 100.0 36 .............................. TTTGTATTATATTGCCTGTAATCCGAATTTGAAGGG 3192395 30 100.0 35 .............................. ACAATAACATCCTGTGCAGTTTGGCCAACAAGCTG 3192330 30 100.0 36 .............................. TTTGACTTGAAAATCCTTTAAATATAAGGCTTAGGA 3192264 30 100.0 36 .............................. TTGCTGATAAGACACCTAATAAACGAACTCCGGAAA 3192198 30 100.0 36 .............................. GTAATTAAAGCTAACACTTATAACCCCCCCTATCAA 3192132 30 100.0 35 .............................. ACTTACCTCCCAAACAGTAACCTCTGCCCTCTGTT 3192067 30 100.0 35 .............................. CTTTTTTTTCCGCTTTTGCCACCATCCATATACGT 3192002 30 96.7 36 ............A................. CAGGTTTTATAATTTAGGTTTAGTTGTTCCTAAATT 3191936 30 100.0 36 .............................. AGCCAACAGGAATTAAAATAGCTATGAGTGCTAAAA 3191870 30 100.0 36 .............................. TGGTATACTTTTAGTATGCCAGTATACCGAAGTAAA 3191804 30 100.0 35 .............................. AACTAGCTACCTTCGAAGCTACGCCTTTCTTTATT 3191739 30 100.0 36 .............................. TAAAGGAACCGGTTAGGACAATACCCAGGGACTGAC 3191673 30 100.0 37 .............................. TTCTTTGGTTTTGATTATCCTAGTGCCAGGTTTATAG 3191606 30 100.0 36 .............................. AGAGAATTTGTCTGATATGTTGCGAAAACAGGAACG 3191540 30 100.0 35 .............................. TATGCCATGGCTATTCAGCGAAAAAACCCACAAAA 3191475 30 100.0 36 .............................. TGATATAATTTTCTAGAAATCTATTGCACATGAGGG 3191409 30 100.0 36 .............................. ACGTCCTGAGGATATTTTGATGTGTGGGAAATGCGA 3191343 30 100.0 36 .............................. CCGATATTAAGCGTGAGCAAGACAAGCTTAATAAAA 3191277 30 100.0 36 .............................. TACGAACATAATACAATCACCAACGAAATATTTTTC 3191211 30 100.0 36 .............................. CTTGTTGGTGGGTTACAGAAGGTTGTAGGTCAGTGA 3191145 30 100.0 36 .............................. ATGGCACTTATTGTGTTTGTTACAATGGTGCTTGGT 3191079 30 100.0 36 .............................. GTTTCTTTCCGGTTCGGCTCCGGAGGTCCTGGCCAT 3191013 30 100.0 35 .............................. AAGATAGAAAGCATATTATCACCTCATAATCAAAA 3190948 30 100.0 35 .............................. ACAACAAAATAAATTTGTTCCTTAACACCGGACTG 3190883 30 100.0 37 .............................. AATTAACTTCATTAATGTTATAATTGATGTAAAAAAA 3190816 30 100.0 36 .............................. TTGGTTGGTGGGTTACAGAAGGTTGTAGGTCAGTGA 3190750 30 100.0 36 .............................. AGTTAACTGGCATCACCGCATACTTTGCGATTATCT 3190684 30 100.0 35 .............................. ACCTTTTTTCACCTCCCTTCGCACATTCTGTCCGT 3190619 30 100.0 36 .............................. TCGAAAAACTACACAGGCACCACAAGGCTTTAAAGG 3190553 30 100.0 35 .............................. GATTTACGCCGTAATTTTGCCGACAAGTTTCCGGC 3190488 30 100.0 34 .............................. ATTGATAGTTTAGACTACCAGCGCTGGCTTGTAA 3190424 30 100.0 36 .............................. GAAGAAAACTAAATCGCCTTCAAAATTAACAGTAAT 3190358 30 100.0 36 .............................. ACCATTGTAATTATGGAACTCCTAGCAGCACCAAAA 3190292 30 100.0 35 .............................. AGCTGTTTATATCTCCGGCATGGCCGGTTGTCCAA 3190227 30 100.0 36 .............................. ATCTCAAACTTTGGTGCAGGCCATTCAAGTACACTG 3190161 30 96.7 37 ........A..................... TTTTTTCGAGAACTTTTTCATTTCCGCTTTTCGTTTC 3190094 30 96.7 37 ........A..................... TTTTTTCGAGAACTTTTTCATTTCCGCTTTTCGTTTC 3190027 30 100.0 36 .............................. ATAACTATCGTAGTCACAACCCACCGCCCAAGGACA 3189961 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 148 30 99.9 36 GGGAAACCGTCACATTTGATGTATTGAAAT # Left flank : GAAGGAAAAAACTTCGTTCCTTTTTGCATGGAGGATAAAAAGTGAACAAGCCAAATTTTAATTATGCCATTGTTTTTTATGATGTGGGTGAGAAACGGGTCGCTAAAATATTTAAAATCTGCAAACAGTATTTAAAACATTATCAAAAATCAGTGTTCAGGGGACACATCACTCCAGGAAACTATCTGGAACTTAAAAACAAGTTAAAGAAAGCCATTGATCCAGATCATGATTTCATAACCTTTATTCAAACTATAAGTGAGTCTTCTTTCCACGAAGAAAGTATTGGGAATACGGGAGTTAGTCCTGAGTCAATTATTATTTGATTTTTTCCAAGTAAGATTATATATTAATAGTGTAAAGCGCTTGAAAATAGGAGGGGAGAGGACTTTGGATTTATTTTTTTGAAAGTGGGTATCACTTGGAAAAATAAATGTAAAGGCCTGATATAATGCCTTATAGAGGAATATCTTAAGAAATAAAATGTCCAATTTGCGTTG # Right flank : ATATAAAAACTAGGGTAGGGTATATATTATCGGAATCGGGTGAAGAATATATTGTTCCTATGACACACCGCCTAGATTTGGTTGGACTAGAAAACCTTAAAATTTATAATGCAAAAGAACTTATGCAGGTTTTAGAAGATAGGTTTTTGCCTATAACCATTGATGCATCAGGACTGATAAATTAGTGGTATGGAAGACGGTGCAGAAGGAGAATGACCGGTACACCAACCGGTTATTTTTTTACCTTTTTCCTCACAAAGGGATCCCTACTTAGCGACATTAATAAGTAAGGTGGCGGGATAAATGCTGGCCTTGTTTTGTATGCTAATAAAATAATGGTTGCCAAAGCTTCTATGATATGGCAAAATATAATCAGTAGCAATAAGGAAGGTTTGATTATTATTGAGCGAACTTGATACAAATAGTCACTCAGTCTCCTTACTTACATATCATCTGGTTTGGTAGTAAAATACCGTAGAAAAGTTGTAAACGATCCAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAACCGTCACATTTGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 9 3748348-3749510 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3748348 30 100.0 37 .............................. ATGGTTCACGTACTTTTGGGTCCCTTTTCTCAAGTTC 3748415 30 100.0 37 .............................. CCAAGATTTATTCCTAACATTGATGCAGTAATAAAGC 3748482 30 100.0 37 .............................. TCTTTGTCTTTAGGCTTTTCATCTTCATCGCCCCAGC 3748549 30 100.0 37 .............................. CACAATCGGCATGTTTAAAATGCTAAAAGCGCATACT 3748616 30 100.0 36 .............................. GCAATTGCACAGCATCGGTGGTAAGTTTTCCATCAA 3748682 30 100.0 37 .............................. ATTGTTTCGAAGGTATTTATTGTGTCTTTATCAAAAC 3748749 30 100.0 38 .............................. TTATATTCTAACCCTGATGAAACATCTTCATTTACTTT 3748817 30 100.0 37 .............................. CGGCTTTAGACTTCTTAGGTCTATTAGCTTCGTATAA 3748884 30 100.0 35 .............................. TATCTTCAAACACATTACAATTGTTAGGCATACGA 3748949 30 100.0 37 .............................. TGATACCTGCAAGCGCTCCAGTAGTGACATCCTAAGC 3749016 30 100.0 38 .............................. ACTAACCAATGAAAACAACTGTAGTTAATGTTAACTTC 3749084 30 100.0 36 .............................. CCCGATCTTGTGGGCATGAAGAGGTCGTGTCTCTGG 3749150 30 100.0 36 .............................. ATGCTGAAAGCATTAACTAAAGTTATTTTCATTTAT 3749216 30 100.0 36 .............................. GATAACTGGTTAGCTATCTCAGTAGCCAGTGCAGCC 3749282 30 100.0 36 .............................. CAGTGTCGGCTATCTCAGCAAGTTTATCTAATGTAG 3749348 30 100.0 35 .............................. TCTTGCTGACCTAGCACACCGGCAAACTGCCAGGA 3749413 30 100.0 38 .............................. AGTATATATAGGGGGATAGTGTCACGTATGTTACGCAC 3749481 30 86.7 0 ..........................GTGT | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.3 37 GTTTTTAGTCTACCTATGAGGAATTGAAAC # Left flank : TGATATGTGAGTAAGAAGACTGAGTGGCTATTTGTATCAAGTTTGCTCAATAATAATCAACCTTTCGTTATTGCGTCTGATTATATTTTGCCACATCATAGAGGCTTTGGCAAACATTTTATTAGTACACAAAACAAGGCCGCCATTCATCCCACCACCTTAGAGGTGGGGGAATTCTGGCGGGGTTTGGTTAAAATAAAATTCAGACTGAATAATACTACAGGTATAACTGTCAATTACTGCTATCAGTCTTAAACACCGTTTTTTATTTTTAACGGGATTAAGTATACTTGTCCCATCCCAAATATCACAAATCCAACTCATTACTGAGTATTGTCGTCGATCTCCGGTAGTGTAATTTTTCCGGCAGATCGACGATATTGTTTTGTGGCCTTTAGACACTAATATATCTAACTTTTAATGATAATGCTAAGTATAATACTTGTTTTAACTGTTTATTTGATGTAGACTTAAAAGTAGACATTCTAAGGTTTTAGTGG # Right flank : TGAAAATTAATTGCCTGTGGAATGCCTACATGCTTCGGTAAACGGTATAGGTTTTGTCGACATGGAAATACGATCAGGTAACTTTGAAGGGTTAAGTGTTTGGTTGTTATTAACCCACTATTAAATTAGGATTTTCGTTTTCTGCCTCTTTTTTTATTCGGCGGTTTATCAATATTCTCAGTAGGTATTGGTGCATCAACAGATGCTTTTATATTAACGTTCCGGTTCTCGTTTAAAGAAATATCAGGAGAATCCGTAATAGGAAGATCATCATTTACAAAGCTAATAAAAGTTTCAAAAACATTAGGCTCAGAATTAGAAATAATAGGAAAAGTAGTAAGCAAAGCTTCAACTTTTTCCAGCATAGCATCATCACTTTCAATAGCCGATTCTAAGAGATCAGATGCACCGAAAAGATCAGTTATCTCGGCAGATTCATTCTTTAGAGAATCGGAGACGGCTTTTTTTTCATTATTTTGCTGAGTACCCCTAAACTTTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 10 3836463-3834581 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3836462 32 100.0 34 ................................ CCGAAGCTCAATCCATTGCGAACGCCTTTGGAAC 3836396 32 100.0 34 ................................ AAAATTAACTGAGGAATTAAAGCCATTGCCGGAA 3836330 32 100.0 34 ................................ TGCGTATATGTAGATACTTACAACAGCCTGGGCA 3836264 32 100.0 33 ................................ AAAAAGCACTGGAAGGAATTATTGGTGGAGGAA 3836199 32 100.0 34 ................................ AAAACCACCGGCTAAAAGAAATTCATCAAAAGAA 3836133 32 100.0 35 ................................ TGCTTTTGAGCCATCCAGAAATCAGCTTTTCGAGT 3836066 32 100.0 34 ................................ GTTTAGGGAGCGTACGCTTGCAAAGATTGAAACT 3836000 32 100.0 34 ................................ ATTCGAGTCAGCCTTCCAAGCTATTTTTATTTCT 3835934 32 100.0 35 ................................ CTTTTCTTGCCTTTTCGCTTAACTTGCTTGCATCA 3835867 32 100.0 33 ................................ TCTTTTGGTCAATTAGCCATTGTATCTCCTTTG 3835802 32 100.0 33 ................................ GATACGGAGAACCGCCTGGTGCATTTGTATGCC 3835737 32 100.0 34 ................................ CCTTGACTGCCATCCGGGAAGGAAAAGTAACCAA 3835671 32 100.0 34 ................................ TGGACAGTGGATATTTTATAGAAGTCAAAAATGA 3835605 32 100.0 34 ................................ AGATCTGGGTGAGGACAGCGAAGACTTAGTCAAG 3835539 32 100.0 34 ................................ CTTTGAACAAACCACTGCCAGGGAGATTAGGCTG 3835473 32 100.0 34 ................................ TAGTAGGGAGGAGGATAATGTGAGCGATATTCAG 3835407 32 100.0 34 ................................ AGAAACGCTGGCAGACAATCACTTTAACCCCTCC 3835341 32 100.0 34 ................................ ATCTGTATGAATAGAGAAGTTTATAATGTCTACA 3835275 32 100.0 34 ................................ AAAGGTTAGAGACTTATTGTTTCTAGCCGCACAA 3835209 32 100.0 35 ................................ AGGCTCTACAATAAACGTTGGAACGAATGCGGTAG 3835142 32 100.0 34 ................................ GATTGCGGCTATGTCAGCAACAGAACCGAATTGG 3835076 32 100.0 34 ................................ TTTTACGACGCTGGGCGACTCCCCAGTATTGCGC 3835010 32 100.0 34 ................................ GGCAAAAGAACAATTAAGCCACTATCAATCACAG 3834944 32 100.0 34 ................................ ACTTTCCGAACATGAAGCACTTAGGAGACATTAA 3834878 32 100.0 34 ................................ ACCCTTTCGAGTGCCATTTGTAAATAATTTTTCT 3834812 32 100.0 34 ................................ TATATATAATATACCACATACATGCATGTATGTA 3834746 32 100.0 35 ................................ CCAAAACAGTGCATCGCCTGGACCACTCACGGCAA 3834679 32 100.0 34 ................................ TTTGCAAACAAAGACTCTATAATAGCTAAAATAG 3834613 32 84.4 0 ........................T..TTTG. | T [3834585] ========== ====== ====== ====== ================================ =================================== ================== 29 32 99.5 34 GTCGCTCCCTACACGGGGGCGTGGATTGAAAT # Left flank : TGGACGGATACCCGGCGTTTATGTGGAAGTAGGTGAGATGTATTTTAGTGCTTATCACGTATGACGTAAATACTCAAACGGCGGCAGGGAGAAAGCGGCTGCGTCAAGTTGCCAAGCAATGTGTGAATTACGGACAGCGTGTTCAGAATTCAGTCTTTGAATGCGTGCTGGATATGGCTAAGTTTCGTGAGGTTCAGCATAAGCTGGAGAAGATTATTGATACGGAGAAGGATAGTCTGAGGTTTTATTTTTTAGGAAACAATTACAAGAATAAGATTGAGCATGTAGGCGCGAAAGCTTCTTTTGATGTTGAGGATACCTTGATTATTTAGTGCGAATGTGAAGCGAACATAAAATCCCTGGTGGATTCGCACCGCGAAATGGTAGGAAATTTGTCGAAGCATGTATAAATACAGGGAGGGCAATAGTATATTTAATGAAAAATGGAAGAAGATGAATGAAATATATCTATTTAAAGATAGTTATAATTAGTATTTGCT # Right flank : ATTTCTTGTTCAGTTATTTTTGTTGGAGGTCAGGATGAAGTTTAAAAAAATTTCCTATACTGACTCTCCCTCAGGCAAGGCTTTTGTTAATTTCAGCTTTGACTAAGAATAAAGATGAAATCCGGCACATTATCAGTAGAGTAAATTATTATATGAAACATAACAGCGTTGCTCATAAACCTTATGCTAAAAAACAGCAAAATTTAATTGATAAGGGTACTGCATGAAGAATTACCGCTGTAGTATTAAATTGTGGGATTTATGATGTGGTTAAGCATTTAAAAGAGGAGGCCATCGCTAATGCCAAATAGTGAATTAGCTAATATGCTTAGCTCTATTATCCATGAGGAATTAAAGCCCATACAAGAGGACTTACAGTCGGTAAAAGGAGAATTGCAGGTAGTTAAAGAAGAATTACAAACAGTAAATGATCGACTGGATAACCTGGATCAAGGCCAACTTGATCTAAAACAAGGTCAAATTAGCCTGGAGAAGGGGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 4452436-4451140 **** Predicted by CRISPRDetect 2.4 *** >NC_013216.1 Desulfofarcimen acetoxidans DSM 771, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4452435 30 100.0 37 .............................. ACTCATTGGCCGTTACTCTCACATACACTCCTCCGCC 4452368 30 100.0 35 .............................. TAGGTTTTTCTTCTCCACGTTCACGGGCTTTATCG 4452303 30 100.0 37 .............................. CTGTATTAAATACGGGGGTAAGAATTCCGATAACTTT 4452236 30 100.0 40 .............................. ATGGTACAACATAAGTGCCTTCACTATTAGGCCCAAATCC 4452166 30 100.0 38 .............................. AAATCACCCTATAAGCACGCATACTCCCGTCCGGTGCG 4452098 30 100.0 37 .............................. AACTTTATAATTGCTTCACCATCGTGATCAATCTTTA 4452031 30 100.0 35 .............................. TCTGATAACACACCAGAAAAAGTAAGAAGTAGTTT 4451966 30 100.0 36 .............................. GCTAATTTAGTAAAAAGCAAGCTTTGGCCTAAATAC 4451900 30 100.0 38 .............................. CCTCAGTACGAGCTATTAAACGAGCTTTAGCTCTTGTA 4451832 30 100.0 35 .............................. GACAGAGGACAGGGTAAGTAAACTACGCAAGCAGC 4451767 30 100.0 36 .............................. TCCTATCCCGTCCCTTCTCAAATTGGTCTAATTGTG 4451701 30 100.0 36 .............................. TTGAACTGCTTGATAATATTAGTAACTGCTTCAACC 4451635 30 100.0 36 .............................. TTGAGTTTTTTGCCCGTAGGTGCTGGGCTAAAAAAG 4451569 30 100.0 37 .............................. TAATGGTAGGTTGTGGAATATATTCAGGAATAGGTGG 4451502 30 96.7 36 ............C................. TCGATAACTGATGTAGGTAACAATCCTTTTTCACGA 4451436 30 96.7 36 ............C................. TTCCCAAAAACTGCATAAACTGCTTAACCTTTTCAT 4451370 30 96.7 38 ............C................. ATGCAGATCACCCACTAGCCAATACCTTAAAAGGCGAA 4451302 30 96.7 38 ............C................. CGTAAACTATGTAAAGAAAAACGAATCCCCCACCGGAC 4451234 30 96.7 35 ............C................. TTAGTTCATCTATCTCCTCAGCCAATTCTATCTCG 4451169 30 96.7 0 ............C................. | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.0 37 GTTTTTAGCCTATCTATGAGGAATTGAAAT # Left flank : CCATTTATTGCTAATTGGTGATATACTGATTAAATAGTTTTGTGAGGGATATTGATGTTTGTAATTTTAGTTTATGATGTGGGTGTTAAGCGGGTAAATAAAGTTTTAAAAAAATGCAGAGCGTATCTGCATTGGGTACAGAATTCTGTGTTGGAAGGAGATATTACCGAGTCTAATTATATAAAATTAAAAGCTGAATTAAGCAAGATTATAAATACTAAAGAAGACTCAGTAGTTATATATACGTTTAGGTTACCCAGATACAACTCGCGTGAGACGTTAGGTATTAAAAAAGGGGGAGAAGAAAATATTTTTTAACTCATTGCTGAGTATTGTCGTCGATCCCCGGTAGTGAGAATTTTCCGGGGGATCGACGATATTAATTTATGCCCTTTAAGTATTAATATATCTGACTTTTGTGGATAATGCTTAGTAAAATACTTGTTTTAAACGCTTATTTAAGGTAGACTAAAAAGCAGGTATTCTAAGGTTTTAGTGGG # Right flank : TAGGTAACCCCGTCCCATTCATCAGTATTGCCATGCCGATTTGTGGTTCAATAATAATTAAAAATTACTCTACTATCGTTCAAACTGCCCCAATAATATTCCGCACCACCCTTCTGAGTCGATTGGTTTCATATTGACAAAATTTGATTTGACGCATATAATGATGACACATCAAATATTTTTGATATGAGGTGGTAATTTGGCAACGGTTTATGAGGAACACGCAAAAGTGTTCAAGGCGTTTTGTGACGACAAACGCCTGCGGATACTTGAACTGCTGCGCGGCGGCGAAAAATGCGCCTGTGTTTTGATAGAACAGATGGACATGGGACAGTCAGCGCTATCTTATCACATGAAAATATTGGTTGAGTCGGGTGTTGTGGAAAGCAGGCAGGAAGGCAAATGGACGCATTACAAAATCAGCGAAAAAGGTGGCGCTTGTGCCGTAAATCTGCTTAAGAAGCTGACAACGCCGAATACGGTTGTTGAAGATGATAATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTATCTATGAGGAATTGAAAT # Alternate repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //