Array 1 8964-9664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOE010000015.1 Escherichia coli strain PE01_642 .PE01_642.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8964 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 9025 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 9086 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 9147 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 9208 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 9269 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9330 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9391 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 9452 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9514 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9575 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9636 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1832-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOE010000003.1 Escherichia coli strain PE01_642 .PE01_642.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1831 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1770 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1709 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1648 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1587 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1526 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1465 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1404 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1343 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1282 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1221 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1160 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1099 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1038 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 977 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 916 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 855 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 794 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 733 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 672 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 611 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 550 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 489 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 428 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 367 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 306 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 245 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //