Array 1 14801-14345 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFJS01000011.1 Klebsiella pneumoniae strain 071I10 CEPHYTEN111_S47_R1.fastq_(paired)_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14800 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 14739 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 14678 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 14617 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 14556 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 14495 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 14434 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 14373 28 100.0 0 ............................ | C [14364] ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CCTGCAGCTGGCCGTCGAGCTGACGGAGGCCGGTCGCGGCATTGCAGAACCGCTCTTCCAGGCAGAACGCGAGGCTGAAACGGCACGACAACGACTGACCGACGTCCGGCGTCTGCCGTTACGCCAGACGGCTGCCGGTGACGCGGTGGAGCTGCAGCTGGGTGACGGCCATTACACCATCAGGGAAGCGGCCTACGTGATCCGTCTGGACGGTACCACCTGCCTGCAGCTGACGGATGCCGGCGGCATACGCCGGATAAAAGAGGGCGATCCCCTGCAGGTGGCCAGCTGGTATCAGGCCTGTTTTGATGCAGGCCTGCCGGTCATCGTTCAGGTGAATGAGAGCCGGGACTGATCGCCACCACACAAGGAACAGGAGCATAAAATGAAAGTCACTGAACCCGGACTGAATACGCTGATCGATAACCTGAACACCCTGATTTGTGAGGACAGCCTGCTCACGCGCCAGGAGCGTGAAACCCTGGTGCGGGCCGTGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15790-14840 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFJS01000053.1 Klebsiella pneumoniae strain 071I10 CEPHYTEN111_S47_R1.fastq_(paired)_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 15789 28 100.0 33 ............................ TATCATCCCTATCGCGCAGCACTTCGACGGCGA 15728 28 100.0 33 ............................ TACCGCCGCGATACTGGCAGTTTTCAGCTGAAT 15667 28 100.0 33 ............................ TCCCGCTGGGTAAGCAATATATAACATTTGCAG 15606 28 100.0 33 ............................ TTTAACATTCTGAAAGTGCAATTTTTGAGGCTC 15545 28 100.0 33 ............................ TTAAGGAGGGGCGCCATGGAGCCCGTATTGATT 15484 28 100.0 33 ............................ CAGCGGCGGCGGTAACGCCGCCAGGAGCAACCT 15423 28 100.0 33 ............................ CACCGATCTGCGCCAGCTGGGTGAGACGATGAC 15362 28 100.0 33 ............................ TACACTCAAGAAAACAAAATCTCAGGTTGATAC 15301 28 100.0 33 ............................ TGGAAGGCGCGATTTGGAGATAGAGCAGCATGA 15240 28 100.0 33 ............................ CTCGCACAGCATCGCCCGGATCCGCTTCCACGC 15179 28 100.0 33 ............................ CACCCGCGTTTTCGAAAGGGATGGCGGCTATGT 15118 28 100.0 33 ............................ CGACGGGGCAGGTTTACGTCTACCCGGGCAGGG 15057 28 96.4 33 .G.......................... CATACCAGTCTCCGCCGCGGTCGTACTCAATAT 14996 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 14935 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 14866 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 16 28 98.9 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //