Array 1 9584355-9582874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWOR010000001.1 Streptomyces sp. MC1 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 9584354 29 100.0 32 ............................. AGGCCGTGCACTTCGCGCACAGCGGGGTGGAC 9584293 29 100.0 32 ............................. GCGTGGGAGGCCCGCAGAGAGGCACAGGAGGC 9584232 29 100.0 32 ............................. GAGCGCGCCGCCATGCGCCTGGAGAAGGATCG 9584171 29 100.0 32 ............................. GCCGACTTGGTCAAGGCCATCCAGAAACCCAA 9584110 29 100.0 32 ............................. GACGGTTCGTAGTCGTGGAAGTCCCACTCCCA 9584049 29 100.0 32 ............................. TTCAGATCGTTCGGACGCTGCCCGTCAGCGGC 9583988 29 100.0 32 ............................. GGCACCACACCGGCAGTCGTCAGCCCCGGCAA 9583927 29 93.1 32 C................G........... TACGGGGTCAGCGGGGACCTCGTGGTGCGCCG 9583866 29 93.1 32 .........T.......G........... GGCGGTGCCTGCGAACAGCGCCTCCCCGCGCT 9583805 29 93.1 85 .................GA.......... CAGGTCGCCGGCCGTACGGCTGCGGCCAAAAGGTGCGCTCCCCGCGCTCCCCGAGCCCCGGGGCTCGCCTTTTGGGGGCTGCTTC 9583691 28 89.7 92 ..............T..G.......-... GAAGGAGTACGCGACGCTGCTGCGGTTGTTGGAGTGCTCCCCGCGTGCGGAGATGGCCCCGTCCCCTGGCTGTTACCGTTCCGGTTCCAGTC 9583571 29 89.7 32 .............GT..G........... ACGCGGGCGGCGTCCGGGATCGCGGAGGCTGG 9583510 29 86.2 32 A............GT..G........... AGGACGCTGCCCGCGACGGCCGGAAGGTCAGC 9583449 29 82.8 32 ..........T..GT..G.......C... GCCATGTACTTCAGCGAGGAAGACCTTCGGCG T [9583422] 9583387 29 86.2 32 ...........A.GT..G........... TGCGTGGGGTATTGGGTGAAGGTGTCCAGCAG 9583326 29 96.6 32 .................G........... GTCAGCGTCAGATCCGGATCGTCAGCCACCGT 9583265 29 86.2 32 .....T.T.........G..........T ACCTTGCGCGGCGCCACCTTCCGAGTGGCCTT 9583204 28 89.7 123 .................-..C.....G.. GCCTTCGCACGGCACGGCAGCGGGTACAACTGGCCTCGGCGTCTACCAATGGGTGGTCGAGCGAACCTTTGCCGGGCTCGGGTGATGACCTCTGGGCGTGGATTCCAACGACTCCATCAGCGC T [9583178] 9583052 28 79.3 32 .....T......T.T..G.....A.-... TTCGGCCGAACCGTCATCATGACGGCCCAGCC 9582992 29 86.2 32 .............GT..G..A........ TCCTCGGCGGTAAACGGAGGTACGCCCGATGG 9582931 29 79.3 0 ............GGT..G.......CA.. - Deletion [9582903] 9582902 29 79.3 0 .C..G......A.....G..T.....T.. | ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 22 29 91.4 40 GTGCTCCCCGCGCCCGCAGGGATGGTCCC # Left flank : TGTGTTTCTGCGAGTAGTACGGCTGATCGGCGCGGAGGCGGTCGGTGGGGATCAGCGTGCCGTCAACGATGACGTGGTCGCCCTCACCGAGGCCGGTGAGGGCTTCATGGAGGCCTGGGGCCCAGGAAGCCAGCACCTCCAGGGCCTCGTCCACATAGCGCCAGGCGGTGGCCTGCGATATCGCGAACCCGGCGCCGAGCTGGGCGAACGTCTCGTTCTTGCGCAGATGGACCAGCGTGAGCAGTGCCTGGTCGAAGCAGCCGAGCTTCCGCCAGCGGGTGTTACGTGCGCGGCGGTGCTCGTACAGCAGCCAGGCAACGTGCTCAACGAGCTCATGCGGGACGTCGAGCGTGGCAGGATACGGAACCAACAGGGCCCCTTCGGTCGCCGGTGTGCTGAGTGGAATCACCACGCCAACGACGAGGGGCCCTGCCTCGTCACCACACCCACTGACCAGCCGATTTCACCCCCCAGCACAGGATGAAAGAGCTTCAGTGAGT # Right flank : AACGGAGGCTCTGATCCTTGCCGAGGCAGAGAGTGCTCCCTGCGGGCGGACGGCTCCCGCCCGTCGCGCAGCACGACCCGGGCAAGGTCGACGCCGGACAGCTCCGGCCCGTCGACGGCGGGCTGCTTGACGGGGGTGGTGGTCGTCTCGGTCATCTCGGCCTCCTACCGGCGTCCGTACGTCATCAGCGAGCTGCGGGCGCCGCTCGCCAGTTGCAGAGCACGGCGCACCAGGTCGGGACCGTAGAGCTGCTCTGCGGTCTCTCGGCCCATGGCGTCGACCGCCACGGTGATCAGCGAGGTGTCGCCCACCATTAGCCGCTGCCGGGCCTCCTCGCGAGCCTGCGCCACCGCGTCGTCCTCGAGGCCGTCCACGCCGGACACCTCGGGCAGCGCCTCCGTGTCGGGCGCGGCAGCCTGGGGCTTGGGGCCGAACGAGGCGGCGAACGCCTCGTCGACCTGCCGCCGGACGGCGCGGCTGGTCGGGGCGTCCCAGTCGCC # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.91, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCAGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCAGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9590210-9587092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWOR010000001.1 Streptomyces sp. MC1 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 9590209 29 96.6 32 ...................A......... GCCTTTCGGGCGGCGTCGTTCATCTCGGCAAT 9590148 29 96.6 32 .........................C... CGCGACACCCACCGGGCGGTGTGCTCGGTCGG 9590087 29 100.0 32 ............................. CGCGACACCAGCACCCCGAAGCTGGTCCGCGA 9590026 29 100.0 32 ............................. GTCCGTCCATGGTGCCGCTGGAGATGTACGAC 9589965 29 96.6 32 ............................T GTCGCGGTTGTTGGGCTCCAGGGACCGGATGT 9589904 29 100.0 32 ............................. TTCGACGAGCTGGCGATCAAGCTGCGCGAGGA 9589843 29 100.0 32 ............................. TGCACGTTCACCGTCGGCGACACCCTCGTCAC 9589782 29 100.0 32 ............................. GGCGGCAGCACGACGGGGGGCGCTGCAGCGGA 9589721 29 96.6 31 ............................T CGGCGCCGTCCGCGAGGAACGCCGCGGCGGC 9589661 29 96.6 32 ............T................ TCCGCAGGTCAGAAGCCGTCACCGAAGACGTC 9589600 29 100.0 32 ............................. ACGCTGGTCCGGCTTTCCCCCGGTGCCGGTGC 9589539 29 100.0 32 ............................. CACCTACGCGCCCGAGCAGTGGCGGGAGTGGA 9589478 29 100.0 32 ............................. ATGACCCAGGAGAGCCTCGCTCACGCCAGTGA 9589417 29 100.0 32 ............................. TCGCCACCCTCGTCCGCGAAGACCGTGATGCG 9589356 29 100.0 32 ............................. GCCGGGTTGCAGACGCTGGTCAGGGACAGGCT 9589295 29 100.0 28 ............................. TACCCCCCTGCCCGTCGGCGTGATAGGG 9589238 29 100.0 32 ............................. GTCATCGTCTGGCACACCACCGAAGGCACCAG 9589177 29 100.0 32 ............................. CGGAGCGCGTCGTCGGGAAGCGGCTCGCCGAC 9589116 29 100.0 32 ............................. CTGACCGTTGGGCCGGCCTGCCCCGGCCGACC 9589055 29 100.0 32 ............................. TTCATCCGCGGCCTGCCGCTGTGCGGGATCTC 9588994 29 100.0 32 ............................. GTCGTCCGTAACTCGGAGGGCGTCGTCCTGGA 9588933 29 100.0 32 ............................. CTCGCTCATGCCGCAGCCGCCTCACGGGCCAT 9588872 29 96.6 32 .....T....................... GCCCGGCATGGGCAGCTCGTGCGCGTGCCAGC 9588811 29 100.0 32 ............................. GCCCCGGCCGGCTCGGCTCGGGGCGTGGTTGA 9588750 29 100.0 32 ............................. TCCTGTCCTACATGGACGGGGACTACGAGGGC 9588689 29 89.7 33 .............AT.....C........ TTCCTGATCGGCTGCGCGCCGTCCAAGGATGCT 9588627 29 89.7 32 ........T....GT.............. GCGGTCTCGGTGTCCAGGACGCCGGCGAGGAT 9588566 29 79.3 32 .C.........A.AT..A.....A..... GTGACGATGTTCGCGATGGCTGGGTCGACGTC 9588505 29 75.9 32 A....T..T....A....A...C..A... TGCCACATGCCGTGCTGGTATGTCACCACGTA 9588444 29 93.1 32 ..............T............A. ACCGTGACCCGGCCCCGGCCGGTCGTTCCCTT 9588383 28 93.1 32 .C......-.................... ACCTACGTCATCGACCGGCCGGGCCTGGACGC 9588323 29 86.2 32 .......T...........A..G...T.. GACGTGTCCACCTCGGCCGAGTGCGGGTCACC 9588262 29 89.7 181 ............T.G..C........... GGCCGCCGGGCCTCGACGTCTGGGCCGCCTCCGCCGCGTCCTGCGGGGCCGCCGCTGGGTCCTCGTCGCATTGACGGGTGACGGCCTTCCGTCTCGGAGGCGCGCTTTGGCTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGTCGCTGGCACGGTAAGAATGCAGGTCAGTGAGT 9588052 29 93.1 32 .............GT.............. CCGCCCTCCTCCTCGGCCTCGTGGCCGCAGGT 9587991 29 93.1 32 .............GT.............. TCCCGTACAAATAAACGTGCCTGAGACGGTGG 9587930 29 93.1 32 .............GT.............. TGCTGCAGCAACCCGTTGAATGCGGGCTGGGC 9587869 29 93.1 32 .............GT.............. CCGTACAGCGCGAGCAAGGCGGCGCAGGAGGC 9587808 29 93.1 32 .............GT.............. AGCCGCCGCAACGTCCGCAGGGACACGCTGGA 9587747 29 93.1 32 .............GT.............. ACCTGCCGGCGCAGGCCGTCCAGCCGCATCCG 9587686 29 93.1 32 .............GT.............. AGGGAGCGCACCGCGTTGATGACGCCGACGGT 9587625 29 93.1 32 .............GT.............. CGCACACCGACTTGAACGACTGCATCAAGCTA 9587564 29 93.1 32 .............GT.............. GTCGGGGCCATCCTGGAGAGCCTGTGCCGTAA 9587503 29 93.1 32 .............GT.............. GCTCCGCGACGTGTGGGAGAAGCACACCCACA 9587442 29 93.1 32 .............GT.............. CCGATGTCCCGCACCGATCCGCTGCGCCGGTC 9587381 29 93.1 32 .............GT.............. AACGACGCCGGCAAGTGGGAGGCGGCAGCGTG 9587320 29 89.7 32 ..............T............TT TGGGATATCAACGCGAAGAACGGCACGCCGAG 9587259 29 89.7 47 .........CG.............A.... CTCGGGCGGACGGGCAAGGTGACCAAGCACGGCAGCGCCGCCAGGCA 9587183 29 93.1 32 ...........................TG TCGATAACCCAAGCGCCGGCGTCCTTCTTTGT G,A [9587172,9587175] 9587120 29 86.2 0 C.............T..A........G.. | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 49 29 94.9 35 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGGTCGTACTTGGCCCACACACGCTGCGCCGCTGCAGACAAGCGACACGCCAATCCCGTGCCGTACTCCCCCACACATGCCACACGCAACAACTACAGGCCCACCCCGCCCCTCATCCTGCTTTTCCGGAAAACCAACCGAACTTCCCACGCGCTATACGCACAGAAAGCACAGAGGGCCGTCCCGCCTGACAACCTCGACTCCGCGTAGCCCATCGAGCGACAGCCCTCTCCCCACCAGCGTCAAAGATGATCACGCCGTAGATGGCAATGTCCGCTCTTGGTAACGTGCTCGCCGCCAGCGGGGAGGCCCGCCGCCCTTCGGCCGTCAGCGCCGAACGTCCGGCGGTGGTCCCGACAGGTGGGGCTGCCGCCGTTCCCTCATCGAGTGGGCGGCTGACGGATGCCCACCTTGAAAGCGAGCTTTGGCCGGTATGTCGGATTCGGTGAAAGTCATGGAAAAGAAGCCGATGGGGCGGTAAGAAATGCAGGTCAGTAAGT # Right flank : ATTGCGACCGACCAGGGTTATGGCCAGCTTCACCGCTGGGTATGACCGTCAGCAACTCCATTGCCTTGGGAGGAGAGTGCGTGACAGAAAGGGAGACGGCGATCCGAGCTGTGGCGCGGCTCGCTGACCACGTGCATTGGATACGGGAGTGGCCTGACAAGCCGACTTGGCGTGACCGGCTTCACAGATGGGTGTCGCCCGAGTCCTATAACTACAACCGGACCGCTTCCCCGCCGAGGCCTTGGGTCGACCGGCCCGCCGGGTACTACGAGCGGACGGGCTGGCGGATCCGCTCGGCCTACTTCAAATCCAACCTTGCTTTCGAGGTCGAGTACGTCGTCTGCGATCTGTGCAAGATCGGCTGGGTAGAGGCGCCAACGTCCTACGAAGGCTACAAGCGTTGTGGCCTCGCTTCGGCCGCTCTGCGATCGTTACGCCGTGCCCACCCCGGAGTCCAGTGGCACACGGCGGGTGGGCACTTCCGCGAGTCTGGACCCTTC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //