Array 1 247-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCV01000038.1 Xenorhabdus khoisanae strain MCB contig038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246 29 100.0 32 ............................. TGTTAGCTGGCCCAGCGTGGCAATTAGAGGTA 185 29 100.0 32 ............................. TGTAGCAGCAAAACAGAATATAACGGTTGACT 124 29 100.0 32 ............................. TCGGAAATATCAGCCAAATAACTCACTGAATC 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : GCCAGTGCAGTAAAACGGGCAAGCTCATACCGAATTTGCGGCCCCAGTAAAATCACATCGGCTTCATGAATACACGCCTCCAACTCCAGCGCTGGCACGGCCTTGATAGCCACATCCAACTGCCGTTTTTCGGCTTCCGACTGCATACGCTGCACCAACATGCTGGTAGACATCCCCGCTGCACAACACAATAGAATGGTTTTCATGGTTTTGTTCTCTTTATTGTTATCTCGTTATTATTTCACTCAAATCTATTTCACTTAAACCGAAATGAGAGCGCTCTCATTTTAGTTAAGGCTAACAGGTTATTTTGTGATTGCTGCGATAAGAGTCTCATAATTTGATAAGTAACAATTAAGAATATGGATAAAATGCGAGCTGCATTACAAATGGAAAATAAGAAAAAATGAAAGGGAGAATTTGACTGATTGATAGGCTAAAAAAGTGGTAGAATTTTTCTGCCCTGAAAAATAGTTATAAAACAGACGGATAAACTTAGA # Right flank : GTTCATGATGAGCGTAGCGCGTAAAAACCAAGAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34753-34114 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCV01000138.1 Xenorhabdus khoisanae strain MCB contig138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34752 29 72.4 32 AA.AGA.AG..G................. GCCTTCTTCAGACAGACGTTCCATTTGAGCAA 34691 29 96.6 32 ...........G................. GTATTTCATGATGATGATGTTTCATGTGATAT 34630 29 93.1 32 ...........G........A........ CCTGACTTACCAAATGACTGGACGCAACGTGC 34569 29 93.1 32 ...........G...T............. GAATAACAAATGAATAAAATTCCTTTCGCTAT 34508 29 93.1 32 ..A.........G................ CACACGTTCTTGGGCTACGAGGTGGTTGATCG 34447 29 93.1 32 ..A.........G................ GCTAAAATTGGGTATCAACAGAAAATCCGTGC 34386 29 93.1 32 ..A........G................. TTCTCTATCTGTACCGTGCCATCATCAGCCAC 34325 29 100.0 32 ............................. CCGCAGCGCAAAGGAGCGACCAGCGGGAGTGA 34264 29 96.6 32 ............G................ GAATACGAAGCGGCACAGGTTTATTTTTCTGG 34203 29 100.0 32 ............................. GATGGTTGGTGCGATGACACTAGCGGCGAGTC 34142 29 89.7 0 .............A...........T..A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 92.8 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AGGTAGAAAAAGGTTCAAAAAAATCCCTCGATTAAATCGAGGGATTTGTGTA # Right flank : CTGTTAGGACGGGTTACTTACCCAATTCTCCCAATGCCCTACGTATTGGCGTATGCTGCTTAATCAGCTCTTGCAATACTTCTTTCAATAACTGACTCTTGCCATTGCCCAATGGCTCCAGCACACTTTTTTCATGGGATTCTGCTTCAGACAGTAAGCCTTCTACCACTTGCAGACCTGCCTCTGTCAAACGCACCAAGGTAACGCGGCGATCACCGCCACCGTTGGAAAAACGTGCTACGTACCCCTGCAATTCCAAGCGCTGCAAAACGCGGGTAATGGTCGGTTGTTTACTGACCGTTTTCTGGGCCAAAAGGCTGATACCGACCGGGCCGCTTCCCGCCAACGTCGATAACACCCGCCATTCCAACACTGACAATCCCTGCGCTTCAACGGTATCATGAAATTCAGAGGAAACTAGCATCCATGCCTGCCCAAGCAAGGCAGGCAAGTAATTGTCAACAAACACTTTTGCATCTGGCATAAGTTGAACAACCCTT # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : GTATTCCCCGTAGGTACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7577-6817 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCV01000100.1 Xenorhabdus khoisanae strain MCB contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7576 29 100.0 32 ............................. GTGAGGTTTATGTGGCTGCTTGCTTGGATCTA 7515 29 100.0 32 ............................. GTTTATATTGGAGAAGAACGACTTGTATTTTC 7454 29 100.0 32 ............................. GGGGCACAGTATATTCTGAATATCCATCGGTT 7393 29 100.0 32 ............................. GTAAATAAATGGGTACATATATTTCTACGTGT 7332 29 100.0 32 ............................. ACCCTGCTGACCTGCACATTGATATGACATTT 7271 29 100.0 32 ............................. TTCACGCGAAACAAACTGGCGTATCTCTTCAC 7210 29 100.0 32 ............................. CGTTATTTCCGAATAAACCAGCCTGAATATAG 7149 29 100.0 32 ............................. TATCATGTCAGGAGGTAAGCGGGATATTACTA 7088 29 100.0 32 ............................. AGACTATTGTTTGTTCAAACACCAGTGCCTGC 7027 29 100.0 32 ............................. TCATTGTTCCTACAACTTGATCCTACCAATCG 6966 29 100.0 32 ............................. ATGTTTTTTTCTCTGAGCTCCTCGGTCATGAT 6905 29 100.0 32 ............................. TTAGTCGAATCCCGTAAGTTCCAGACCAATAC 6844 28 86.2 0 ...............A.....-.....TA | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GTGTTCCCCGTGAGTGCGGGGATAAACCG # Left flank : ATTAATTGAAGAAGTCCTCGCCGCGGGTGAAATATCCCCACCACTCCCTCCTGCTGATGCACAACCTCCCGCTATTCCCGAACCAATATCCATTGGTGACATTGGGCACAGGAGCCAATAACTATGAGTATGACGGTCGTCGTAACGGAAGCCGTTCCTCCACGATTACGGGGACGTTTAGCCATTTGGTTACTGGAGATACGAGCCGGGGTCTATGTCGGAGATATCTCTCATAAGATTAGAGAGATGATTTGGGAACAAATCACAGAGCTTACCGAAGATGGAAATGCCGTTATGGCATGGCAAACGAATACTGAATCTGGATTTGATTTTCAGACCTTCGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTGCGTTTAGTGAAATTTAAACCGCTTTCTGAGGATTAATTTGGAGGCGTTAAAAGGTTATTCAAAATGGTAGAATTTTAATCACCGATAAAGTCATTTAAAAACATGTTGTTAAATTTAGA # Right flank : GGTTTGATTAAGAATAACTTGTCCTTGTACTACTGAGTCTTCGATCACCTACACCATTGCCAGTAGTAATAGGATAACTAACTATATTGTCACGAGATGATATTGCCCCGAATATACGCATGACTTTCGCAATTAACATTAAATAAAACCGGGGGTATCTTGATGACACATAATAATCTTTCAGGTATCGCTAAAACATCAAGTAACTGTATGCATCAAGATGTAAAGCGGGCAGGTTTACGCGAATGGGCTGGGCTAGCACTTCTCTCTCTCCCAACGATCCTGCTTGGGCTTGATCTGACTTTGTTACATCTGACTCTACCTGTACTAGCAATTGATTTACGACCGACAAGCACACAGGCACTTTGGATTATGGATGCTTACGGCTTTCTAATTGCGGGTTTTCTTATCACAATGGGTACTTTAGGCGACCGCATTGGCCGCCGCAAACTACTATTGATCGGCGCAACAGCTTTCGCCATTGCCTCTGTAATTGCAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19016-18375 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCV01000100.1 Xenorhabdus khoisanae strain MCB contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19015 29 100.0 32 ............................. CGACTTTATCAGCTTGTATTGCCTTGCATGGG 18954 29 100.0 33 ............................. GTGTTGCGATGGTTTCAGACGTAGGTGGCTATC 18892 29 100.0 32 ............................. CGTTCACCCGATTTGCGTAAACCAGTTCGCCG 18831 29 100.0 32 ............................. CAGCATTGTTAATGTTAATTGAATCTGGGTGG 18770 29 100.0 32 ............................. CAGCATTGTTAATGTTAATTGAATCTGGGTGG 18709 29 100.0 33 ............................. GAATTGCCATTATTCAGCCTCCTGCGCCTGAGC 18647 29 100.0 32 ............................. AAAAGCGCCGTTCCCGCCAGTATTGCCGCGAC 18586 29 100.0 32 ............................. ATCTCTTATGTTCGCTCCTGCTGTGCAACATA 18525 29 100.0 32 ............................. TGAGCCTTTACGGGAATACCCGATTGCCTGAG 18464 29 96.6 32 ...............G............. CTATGTCAACTCAAGGTTCAAGGGAGAGTAGC 18403 29 93.1 0 ...............G............A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : CGAACGCTTTCTTATTGTCGCTTCTTGCAGCTT # Right flank : ATTATAAAAGACTTGTTAACCGATTTTTTGTAGCTTAGAATCAGACCAGTTAACAGGTCTTTTAGTGAGGAATTATGGCTAATATCATTTTGAGCGACATGGCTGCCAGCATCAGTGAATTAAAGAAAAATCCTATGGCAACTGTCAGCGCAGGGGAAGGTTATCCGGTCGCTATTCTGAATAGAAATCAACCTGCATTTTATTGTGTTCCTGCGGAACTGTACGAAAAAATGTTAGAAGCTCTTGATGATCAGGAATTAGTTAAGATAGTGAAAGAACGGGAGAATCAATCCTTAGTTGATGTGGATTTGGATCAATATTTATGAGTTATAAAGTTAAATTTAGGGAAGATGCTCAAAAAGAATGGAATCGTCTGGATAACACTATTCAACGACAATTCGCTAAGAAATTGAAAAAATGTTGTGAAAACCCATACATCCCTTCCGCAAAACTAAACGGAATGCCGGATTGCTATAAAATAAAATTGAGAGCTTCCGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //