Array 1 49520-49217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVZ010000022.1 Enterococcus plantarum strain DIV0208b scaffold1.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 49519 33 100.0 35 ................................. CATTTGACCAATTAATGTGGTTGATTCAGCAAAAC 49451 33 100.0 33 ................................. TAAGTGATTGAATAGTGTGTCGGTGTTTCCCAT 49385 33 100.0 37 ................................. ACCGAATATCCAAGCGTTACCCGCCATTGTTGACGGT 49315 33 100.0 33 ................................. AATTCAGTGTTCGTACGAGGGTTTTTTAACTTA 49249 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : GGAGGTAAGATTATAGAGATAAGTATGAATATTTGCAGAATAGTGCAAGAATTTGAATGGTATTTTCCAACTGATGGCAAGCATTGGTAATATTTGACTGGAATAGTAAAAAATTGCATAAAATAAAAGGAAAGAAACGGATTTATTGATGGTCGGTGACTATTGGAATGGTGAGCTTGGAAAATGGATGCATTACATCGATAGCTTGGGGACATTGATTTCATTATTTTATGATTCTTTGAATAGACAATTATAGAGAAAAGAAGATAATTTTTTGAAATTAACCGTGACTTCTGTTACTAGAATACTTATAATTAGAGAGAGAGTTTATATATAGTTCAAGTGCGAATAATAAGTGCACATGAAATCGCTAGGGGATCCGCACCAATTTCTTGGTAATAATGGAATGGAAAAGCGATTATTTCTCATTGAATTCACATTTTTTACTATGATTATGGTTGGAAAGTGACAGATATGTATATATTTCGTCCCTTTTCACG # Right flank : TGTTGTTCGGTGTCACATTTTGTGATCCTTAAAAGGTCTCACTCTTTATCGAGTGAGATTTTTTCTTCAATCATCTATTTACCAATCGTTAAAACAGAACGATTTATCTTTCCCGTTTATCAAAAGATACTCGTCAAATCAAAAAGAAATATTGTTCTACAAAATTCCATCATTATTAAAGAATTTTCTTCCTATTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCGAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTGGTTATGGCGGGAGCAGGCAGCGGAAAGACGAGAGTTCTAACACACCGTATTGCCTATTTAATTGAAGAAAAAGATGTGAATCCATGGAATATTTTAGCAATCACATTTACTAATAAAGCCGCAAAAGAAATGAGAGAACGGGTTGGGAAATTATTAGAAGTCGGTGGAAACGATGTTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19777-18459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVZ010000010.1 Enterococcus plantarum strain DIV0208b scaffold1.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 19776 34 100.0 34 .................................. CTTTGTATTTTAACGGATCGCATCGGAATGTAAT 19708 34 100.0 32 .................................. TAGTTTGGTTGATCTCTTTAATTGTTTGGGCG 19642 34 100.0 36 .................................. CGTGAAACATTTTGAAATGGTCTCACAATCGTCCTC 19572 34 97.1 35 .................................C GAACGTAGCAAACAATATGGCTAATGATTGGTCAC 19503 34 97.1 34 .................................T TTTGGCTGTAATAATGTAACCAGTAAGTGTATTC 19435 34 97.1 33 .................................C TCCTTTTTCTTGCGCTCGTTTTGCGCTTTTAAA 19368 34 97.1 32 .................................T TTGCCAACAACTTGATAATGATAACCTTTAAG 19302 34 100.0 33 .................................. TCTTTTTCACCGTCCTTTAGTTGCGACATTAGA 19235 34 97.1 34 .................................T GCTGAAACTAATCTTTCTGCTTTGTCAACAGCAT 19167 34 97.1 35 .................................G TTACGATTACAGACCCGAATACGATTCTTTTAGGA 19098 34 97.1 33 .................................T ACACCATATTTTGTTAAAGGAGCGGGTGGTAAC 19031 34 97.1 33 .................................G GTATTACGTTAAAAATATCAGCACCAGATAAAC 18964 34 100.0 34 .................................. AGTGCTGTTTATAATGCCTTGATTGCTGGTGGAT 18896 34 97.1 34 .................................G CTCTTAACAAGTGGGTCAGCGGATGGCAAAGACT 18828 34 100.0 33 .................................. ATTAGTGGTGATTTATAGTCTATTTGTTGTATA 18761 34 97.1 34 .................................T GTTGGTAAGTTGACTTTTGCGGATTCCAAAACAA 18693 34 100.0 33 .................................. ATGTAACATTCAATTTTCATGTTAAACCTCCTA 18626 34 100.0 34 .................................. TTTATAAGTTGCGCTATCAGTGTAATATGATTTC 18558 34 97.1 32 .................................C TGCCATCGATCAATGTAGCTTTGCAGATTGCG 18492 34 97.1 0 .................................G | ========== ====== ====== ====== ================================== ==================================== ================== 20 34 98.3 34 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : TTTAGATGGTTATCCACCGTTCTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGCTCGAAGAATGGAACTCGCCGTTTGAGAAAGGTAGCAAAAAAGTGCCAAGATTATGGACAGCGTGTTCAGAATTCTGTTTTTGAGTGTGTTGTTGATGCAACGGAGTTAACTCGCTTAAAAAAAGAGTTGATTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTATAGATTAGGGAATAATTATCAAAATAAAATAGAGCATATTGGTGCAAAAGAAAGCTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAAAATTGGTGCGAACCCCAAGTGCTCATGAAATCACTGGGGGATCCGCACCATAATTTCGTCATTTTTGATCAATAAAAAGCTTTTTTCTCATGTGAATTTAATTTTCAAAGTATTTTTTTGTGAGAAAGTAAGAATATGTCATATATTTTTGCTGTTTTCACG # Right flank : CTCGTACAGTCTACGCTATCGATTTCCTTGTACTCGTCTAGCTCTGTATAGAGCTAGACACTACCTAAGATTCCAAAATAACAATTACTGATTCATATTGCTCGTCTTATTTAAAAAAATTCTATACAATATAAATGGAGACAAGTAAAACGGTAGTGGAGGGAAATGAATGAATAACGTGATGGAACAATTAAGGAAATATGCATTATTACGAGGAATTGTTTATATGATTTTTGGATTGTTGATTGTGATCAATCCTAGGAGTGTGTTCCAAGTCGCTGTTTACTTTATATCAGCTTATATTGCAATCAGCGGTGTATTAAATCTTTACGATGGTGTTAAAGTCAAAAAAGCAACCGGTACCTATGGAATGAGTTTTCTAGGTGGAATCGTCTTATTAGTGATTGCAGGAATCGTGCTTGTTTTTGCGAAGGGAATCGTAAGTATTTTACCGATTTTCCTAGGTCTTATGATCGTGATTATTGGCGTGACTCGTGCGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3737-5389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVZ010000044.1 Enterococcus plantarum strain DIV0208b scaffold1.44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3737 33 100.0 34 ................................. ATTGTCATCGGTGTAGATCGAAGGCAATTATTTT 3804 33 100.0 33 ................................. GTTTCTCTTCCGTATCCCAGTACTCGTTACCTG 3870 33 100.0 35 ................................. TAGTGAATTAGATTCTATGTTAGCAAATGCTTTTA 3938 33 100.0 35 ................................. ATAATCAATTCCCAAATATTTAGTTGTAAAAGTGT 4006 33 100.0 35 ................................. ATCTCTAACAATATTAACACTGTCATCATCGCTAT 4074 33 100.0 35 ................................. TTATTGTAGGTTGGCATATCGTGGCGGTTGGACTT 4142 33 100.0 36 ................................. CTGCAATGCTGAAAGCTTGGCACGGAAATCCTCCAC 4211 33 100.0 34 ................................. AGCGGTTTATATGGGGTTGCGGTCAACGATTGAT 4278 33 100.0 34 ................................. AAAGCTCGTGGATGGACGGAAGAAGCAATCGCTG 4345 33 100.0 35 ................................. TAGTATTGGTGTTCAGATTCAAGAATTATTAGATG 4413 33 100.0 34 ................................. TAAGAATTTAGCTATTAAACACACAACTGAAACT 4480 33 100.0 35 ................................. GGAAACGGGCGCACGTTTAAGACGGCGCCCTTTTT 4548 33 100.0 33 ................................. TTACTAGAATAGAATCAAACGTATTTAAAAAAA 4614 33 100.0 33 ................................. TTTTGTATCATCTCTAATCATTTCTATAGTAAC 4680 33 100.0 34 ................................. TAGCTTAGAAGAGGTATCTACATTTGTAAACCGA 4747 33 100.0 34 ................................. AGTCTGGAGAGCAACTCTCAATTCGGATATTTTA 4814 33 100.0 33 ................................. AAAATATCCAGTTTTTACAGACAAAGTTAATAG 4880 33 100.0 35 ................................. AAAAAAATAAGACTAGACTATTAAAAGCCTAGTCC 4948 33 100.0 33 ................................. CTACATTAGGTTGGTTTTGTTGAGTTAATAACA 5014 33 100.0 36 ................................. AATTAAAGAATTTTCACCAAAAGCAGAAAAATATAT 5083 33 100.0 34 ................................. TGAAAGAGAAAAAACTTTACAATTACTTAAAGTT 5150 33 100.0 35 ................................. TTTTACGGTGCCTATTTATGAAGTTCATAGGTTCG 5218 33 100.0 36 ................................. CTCGTCGCCGACCATATAAATCTTAGTCTTGGTCCA 5287 33 100.0 35 ................................. AAGAGTAGCCCGCATAGTAGCTAAACATGGTAAAG 5355 32 87.9 0 .......................-TC..A.... | ACC [5377] ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.5 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGAAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCACTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACACTCATGTAGTTTGGCAAAAACGAATATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAATAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCTAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGGTTTTAGCTAGGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGCGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : TCTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAAGGGTTTATTTTAAAAGATATTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGCAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4831-5138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVZ010000077.1 Enterococcus plantarum strain DIV0208b scaffold1.77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 4831 34 100.0 35 .................................. ATTGTATACGTATAATTTTGATGATGAAGACTTAC 4900 34 100.0 34 .................................. AATCTTGACTAGGTATTTTACCTAGTCTTTTTTA 4968 34 100.0 35 .................................. ATATCGGGAAAATGTCGCTTTACTTTATCCATCAC 5037 34 100.0 35 .................................. GGTGACATACTAGGTGTAGGTAAAACAGCTGTCAG 5106 33 82.4 0 ......................AA...AA.-.C. | ========== ====== ====== ====== ================================== =================================== ================== 5 34 96.5 35 GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT # Left flank : TGGGGATGGCGGAGCAGATATTTTACCGTTATTCCGTTTGAACAAACGTCAAGGCAAGGCATTGCTGAAAGAATTAAGCGCACCGGCTGAACTCTATACGAAAATCCCAACTGCTGATTTAGAAGATGATAAACCTTTAGTAGCTGATGAAGTAGCGCTTGGTGTCACTTATGACGATATCGACAACTACCTCGAAGGAAAAGTAGTATCAGAAAAAGCAAAAGAAAAGATTGAAAGTTGGTATAAAAAAACACAACATAAACGTCATATGCCAATTTCAATTTTTGACGATTTCTGGAAGTAAATTTTAGGAAAAGAATGACTAATATTTTGGTGTGAACCTCAAGTGCACATAAAATCACTAAGGGACCCGCACCAAAATTTATGGGTGAAAAAGGCTATTTCTGTATTTTTCTCCTCTTTTTTTAATAGTTATGTAGATTTATTTGAGAAAATCAAGAATATGGAAAAATTATGGAAGATAATCCTATTTTTTCACA # Right flank : TAAAATGGAGTCTTTCCTTTTTTTACATCTAAAATCAAATTAACATGCCTTCATTTTGTTCAAATGGTTAAAAAAAGTGTAAAATTAAACTAGTTATCTGAAATAGTGGATAAACTATTCTACAATTGTACTAACTAAAGGAATAAGAAGGTGATTGAAAAGATGAAAAAATTGTTTAGGAAAAAAAGAGAGATAGATAAAGTAGTGTTTTCTTCGTCAGAAGAAAACGCACCAAAAATCGATAATAGTGATATTCGGATACCAGCCGATATTAAAGGGCTGTCCAATCAAGAAGTACAACAACTTTATACTGAAGGTAAGACCAATAAAGAAGTGGAAGATCTATCTAGAACTACAAAACAAATTATTTTAGATAACTCGTTGACATTATTCAATTTTATTAACTTGTTTTTAGCAGTGGCAGTTTTTGCAGTCGGTTATCCTAAAAATGCGCTATTTTTTTGGATCATTATTATCAACACAGCAATTGGTGTTATTCA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: F [matched GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //