Array 1 676-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDHM01000013.1 Corynebacterium diphtheriae strain rz632 rz632_contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 675 29 96.6 32 ............................G AACGGTTCCGCGATGGCCTCACGGCCACACTG 614 29 100.0 32 ............................. GCTTGGGCGCTCGACGAAATCGAGGCGCAAGG 553 29 100.0 32 ............................. TCCGAAATTGCAGGCTCCACCGCCTTATTCGC 492 29 100.0 32 ............................. AACTACCGCCAATCAACATTCGATCTACGCAT 431 29 100.0 32 ............................. AGGGCTGGCGCGGGGCTTCCCGCGGCCCCTTT 370 29 96.6 32 ............................G TAATTGAGTGTAGGCCAGGTACGACGTGGGCG 309 29 100.0 32 ............................. AGCGGCGCAAATCATGGGTGTTTCAAGATCAA 248 29 96.6 32 ............................G TCGCCTAGATTTAATCTAGTTAGATAATCAAC 187 29 96.6 32 ............................G TCGCTGGGCTGGCCCATCTCAGCGAGGACGTC 126 29 100.0 32 ............................. AAGCCAGCGCTCATATTCGGAACATGGCGCGT 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CCGCCCCAATAGCCACAGCACAGCACCGCACCGGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 139366-138848 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDHM01000005.1 Corynebacterium diphtheriae strain rz632 rz632_contig000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139365 29 100.0 32 ............................. CACAGCACAGCACCGCACCGCACAAGCCCCTG 139304 29 100.0 32 ............................. GGGGTGCCGTCCGGCGCGCCAATATCAATACC 139243 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 139182 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 139120 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 139059 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 138998 29 96.6 32 ............................G GCGCGTCTGGAACTTATTGAAAAAGAACTGGA 138937 29 96.6 32 ............................G CAGGGGCACGACATCGCCGAAGTTTTTAATAG 138876 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : AGCCGCGAGGTCTTTTGCGTCAGCTTCTGGATCTTG # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDHM01000047.1 Corynebacterium diphtheriae strain rz632 rz632_contig000047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40 29 100.0 32 ............................. TTTAGCTGGGCGTTCGTCCAGTCTTTCATCTC 101 29 100.0 32 ............................. GTCGTCGGCGTGGCAGCAGGTAAAGGATCGAC 162 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GGCTCATCCCCGCTGGTGCGGGGAAAACT # Left flank : GAAAACTGAGGGTGAGTGTGGTTGTGAGTGTGATCATGGG # Right flank : GGTGCGGTGCTGTGCTGTGGCTATTGGGGCGGGGCTCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCTGGTGCGGGGAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.70,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //