Array 1 1705194-1706283 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483393.1 Clostridium perfringens strain NCTC13170 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1705194	    36	  86.1	    29	A...C.TA..A.........................	TATACTGTAAATGGTGGTAAGTTTACATT 	A,A [1705196,1705206]
   1705261	    36	 100.0	    30	....................................	GGAGATAAATATCAAAGATTACTAAAGACT	
   1705327	    36	 100.0	    29	....................................	TACCATTAGAAGCAGCTAATAAAGTACCA 	
   1705392	    36	 100.0	    30	....................................	GATAGCAGATTGACTGAAATTGCTTATAAG	
   1705458	    36	 100.0	    29	....................................	TTAGAGCAATCATTGTTTTACCTTCGATA 	
   1705523	    36	 100.0	    30	....................................	ATATTCATTGAGATCATCATAAGAGATTCT	
   1705589	    36	 100.0	    30	....................................	AAATTGTAGTAAAGAAAATTATAAAAAGTA	
   1705655	    36	 100.0	    30	....................................	CACTAAAGATCTATTAGAGTTAGTGGAATT	
   1705721	    36	 100.0	    30	....................................	GTGATATCCCATTCTAGGAAAGGTTTTAAA	
   1705787	    36	 100.0	    30	....................................	CCAAGTAATATAAGATATGACAGATTCTTA	
   1705853	    36	 100.0	    30	....................................	AGAAATAGAGTTGGTAAGGAGTTTAAAGAT	
   1705919	    36	 100.0	    30	....................................	GAGCTAGATATTACTGGTACTGGTGTTTGG	
   1705985	    36	 100.0	    29	....................................	CCTAAAGTTGGTAAGTATGTTAGATTGCA 	
   1706050	    36	 100.0	    30	....................................	ATGAGTAATATTAAAGTTGATTTAGACAAG	
   1706116	    36	 100.0	    30	....................................	TAGAAGAGCAAATATATTAGAAATTCCAAG	
   1706182	    36	 100.0	    30	....................................	AATGGTACAGAACTAGATAAGCCTATAGAG	
   1706248	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.2	    30	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT	                              	       

# Left flank :   AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATAATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA
# Right flank :  TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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