Array 1 959154-959901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068171.1 Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 959154 37 100.0 30 ..................................... CAACATTCGTAAAACTGATTATCCGGTAAA 959221 37 100.0 30 ..................................... AGGCTGTCAAACCTCCTGCTTTACTTTCAG 959288 37 100.0 30 ..................................... GGAAGTTGATTTACCGTTACCGGCACTAAA 959355 37 100.0 30 ..................................... CTTTATACCTCTTAGTTCTCTGTAAGATAT 959422 37 100.0 30 ..................................... CTGTCATAGAAGGCTTTCCCATAAACTCAC 959489 37 100.0 30 ..................................... GTTCTTTGTTTTTTGTGTCCGTACTTCATA 959556 37 94.6 30 .....C..........A.................... TCTTTCCGTTGGGGAGGATGCCGTATTTTT 959623 37 100.0 30 ..................................... CTTTAATTTATCTTCTTCAGCTTTAAGATC 959690 37 70.3 69 ................A....A...TT.TT.T.TTTT TAAGGAATTGATGAATGTTATTTGGAGGGTAAACACAACTACATCTCTCAATTTGAAGTGTTCTTCTAT T [959712] 959797 37 83.8 30 ....T.........T.A...A.A...A.......... TTTCATAATTTATTTTATTAGTTCTGGGTC 959864 37 97.3 0 ................T.................... | A [959879] ========== ====== ====== ====== ===================================== ===================================================================== ================== 11 37 95.1 34 GTTGCGACTGCTCTCAGTTTTGGAGGGTAAACACAAC # Left flank : GATTTACAGCAATGTAACAGATAAAGGCGCGCTTTTAAATGAAATTGAACAAAAGGATAAAACAGTCAAAAAAAATCCTAATTTTAAAAAATATATTGTCAATGGTTTATTGAAACAAATTAAAAAAATGAACGTTGATAATTTTAAAATAACTCAAGATGGTTTTAAATTTAATAATTTAACAAAGGACATCCTGAATTCTTATACGGAGTTAGAACAAAAAACAACGCTTTTGGTTTTGATACGAAACAAATTTGCACACAATCAATTACCCAACAATGAAGTATATGAATTTAGTCAAAACCTTTTAAAAAGAGAGGAAAACCAAACATATGCAGCGTATTATTTAGAAATATTTAAAAAATTGAAAACAGAACTGCAGTAGTTATTATTATGCTCTTTGATATTTGCTTTTAAGAAATTTGCCATGTTTTTAGCATTGTAAAAACAGGCTCTACACTCCGATAAAACCGAGCAATTTGCTACCTAAAACCATTGAG # Right flank : CAAACCCTGTCAAGATTCAAAACCTTGACAGGGTTATTCTTTGGTACATAAAAGAAGATGGAGGAATTTGAAAATTAAACAGCTGCTTTGTAATTCTTGTATATTCGAGACTTTTAACAAACTTTAACTCAAAAATGGCATTCATTGTGTTGATTAATGCAAGTATTTATCAGAAATTTACCCATTATTTTAAATTAAACTATGTCAGATTCATATCAAGCAGAAGACATCCGTCAGCTTACTGAGAAAGTGAAAGAGCAGAATTACTTTTTTAATCTTCTGAGACAGGAAATCAATAAAGCAATCGTAGGACAGCAGTATATGATAGACCGTCTTCTGATCGGTCTTTTAGGGAATGGTCACGTCCTTCTGGAGGGAGTTCCCGGTCTGGCAAAAACTTTAGCGATAAAGACTTTGGCAGAAGCCGTTCATGGTGAATTTTCAAGAATACAGTTTACGCCGGATCTGCTTCCTGCTGATGTTGTGGGAACGATGATCTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACTGCTCTCAGTTTTGGAGGGTAAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1572249-1574528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068171.1 Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1572249 46 74.5 30 T...AC.....A...GGCGA..-.TA..................... GAAGGAAAAGAAAGCGTTCAAAACGTTATA T [1572256] 1572326 47 100.0 30 ............................................... GAACTGCAGAATTTATATTATGCTTTAAAT 1572403 47 100.0 30 ............................................... CATTCTCATTTAAAGGGCAAGGATCAAAGT 1572480 47 100.0 30 ............................................... TTTATACCCTGAAATTCAAATTTTTCACCA 1572557 47 100.0 30 ............................................... AGGCGATGGATAAAACCGATCAGGAGATTA 1572634 47 100.0 30 ............................................... CCGCCGATTACAGTACTCACTTCCTTCGCT 1572711 47 100.0 30 ............................................... ACTTAGGATTACCAAATATTCAAGGAACTA 1572788 47 100.0 30 ............................................... TTTTCTTTTTTTTTGTTTTCTTCAGGATAA 1572865 47 100.0 30 ............................................... GTAGTGATTTCGCTGTGCATATTTTGCCCG 1572942 47 100.0 30 ............................................... AGATGAAAATAACAGATAATAACCTGTACT 1573019 47 100.0 30 ............................................... TTTTCTTTTTTTTTGTTTTCTTCAGGATAA 1573096 47 100.0 30 ............................................... GATAAAAATATTAATTAATTTCATCTATCA 1573173 47 100.0 30 ............................................... TACTATTATTCAGGTTATGTTTGGAATATC 1573250 47 100.0 30 ............................................... GTCAGGAAGAAGGAGATTTGAATGGGGGAG 1573327 47 100.0 30 ............................................... TTTGTAAAGTTTTAGAATTAAATCTAGATT 1573404 47 100.0 30 ............................................... AGAATGGGCGAAACTTGGGAAGAACAAGGT 1573481 47 100.0 30 ............................................... TTTGTAAAGTTTTAGAATTAAATCTAGATT 1573558 47 100.0 30 ............................................... TAATAGAATAAAGAGCCGTTAAATACGGAG 1573635 47 100.0 30 ............................................... CAGGTGAAAAAATAAATATCTCTTGGGATG 1573712 47 100.0 30 ............................................... ACGACCAGACGGAACCGCTCTACTTCCAGG 1573789 47 100.0 30 ............................................... TTGATTTGGTAGCAGTATCAATAATATCGT 1573866 47 100.0 30 ............................................... TCAGGAAGCGCTTGGAGATCCAAGAAAATT 1573943 47 100.0 30 ............................................... CTATCACTTGTATTTAATTAGTAAACAGAT 1574020 47 100.0 30 ............................................... TCTACCAAATCATAGACATCATCTGGAGCT 1574097 47 100.0 30 ............................................... CTCGGTAGGATTCCCGCGCATACATGCCAT 1574174 47 100.0 30 ............................................... ATGGGAGTTTATCAATGACAAATCAACAGA 1574251 47 100.0 30 ............................................... GTCGTTTTTCGTAGCCATAAAATGAAAATT 1574328 47 100.0 30 ............................................... ATATTCTGAATTTTTAAAGTTCAGATACTG 1574405 47 100.0 30 ............................................... GTTAATTTTCTGACAAATCCCAATCCATTA 1574482 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 30 47 99.2 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Left flank : TATAGAGGCCATATTCGTAGAATTCTTCTGATGTAAAAGTTTTTTAGTGAAATGTCACCTTTTATATCGTTTTCATGTAATAGTAATGAGGTAATAAGAAAACCACTTAAAACAAAAAAAAGTACAACTCCAAGCTTGCCTATTATTTGAAAGAATGGAACATTCCAAAAATTATCTAGTTTAAATAGTGATTTATATAGTTCAATATGATGGATTATCACCAAAGATGCTGCAATAAATCGAAGGCTATTAAGGTTGGGATAAATTTTTTTCATTTTCATTATTTTCTCAAAAGTAAAACAATTCTTAGGTAGATGAAAAAGTTGTTATTAAAATAATCAAAGAAAATATGAAAATAATTTTAAACATATTAAAATTTCTCTTAAAAAATCTCAACGCCATTCACTCAGGCTTTGGGATGTGAAAAATAAAAACGCTTTTTAAATAGGGTTTAAATGGGGTTTAATTGTTGATTTTTTTTGACGTTTTGTTTTAATTTT # Right flank : CCTCAAAATTTAACCCTCTGTTTTTCAGAGGGTTTATTTTGTTTTTAGGATTTAAAATTCAGAACAATTCGAGCTGTTGAAAGGTCGGTGGCGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATATCGCCAAACTGCTTATCGGTAATGCACATAATGGCCACTTTTCCGGCTTTCGGAAGCATAAATTTCACCCTTTTGATGTGCACTTCTGCATTTTCCCGGCTCGGACAGTGTCGTACATACATCGAAAACTGGAATAACGTAAATCCGTCATCAATCAATGCTTTCCGAAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATATCTTCAGTAAAATGAATAATGTAAAAAGTAAGATGAATTTCTTTTTATCATATTAGTTCCGGATAGGAAATCAGTCGTTTTTCTCCTGTATAGCATTTGTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATTACACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //