Array 1 162450-160347 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRH01000007.1 Salmonella enterica strain GSJ/2016-Sal.-012 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162449 29 100.0 32 ............................. AGATGAACGCCAAAAAACATGACGAACAGCAG 162388 29 100.0 32 ............................. GGCCATTGTGGGACGTATGAACCATCAACATA 162327 29 100.0 32 ............................. GGGATCTGAGCAATACAGCGGGGAAATCAGCC 162266 29 100.0 32 ............................. CAGCTATTTCCCAACATTGCCCGTGTTATTGG 162205 29 100.0 32 ............................. CTTAACGGCGAGAGCGTGAAGGTGTATCGCTA 162144 29 100.0 32 ............................. CCAGACAAACCCTGCTCGTTTCAGATGCTGCG 162083 29 100.0 32 ............................. TGACTTTAACGCGAGCACCTTTGGTATTAGTT 162022 29 100.0 32 ............................. GCAACTAATGTTAGTAAAAGTTAGCTAATAAG 161961 29 100.0 32 ............................. ACAGCACGTTAAAGATGCTGGCGGTATCTGAA 161900 29 100.0 32 ............................. TGGACGAGCTGATTGCTGCAGGACTTATTATT 161839 29 100.0 32 ............................. GCATACTCACTGAATAAATCGAAATATTTAAA 161778 29 100.0 32 ............................. ACTGTTAGGGTGACAACGCCGACCACAACGTC 161717 29 100.0 32 ............................. GCTTTCAGGGATTCTATAGTATTTATATATTT 161656 29 100.0 32 ............................. ATATTAGTGGGCGCAATCAGTGTCACCGTCCC 161595 29 100.0 32 ............................. GCTATTCAATAAATAAATCAATAACTGCATAT 161534 29 100.0 32 ............................. TGCTGTATCTCGGTTGGTTCGATGGCAATCCG 161473 29 100.0 32 ............................. TCCGTTAACCAGGGAAATGCCAGATGACAGCA 161412 29 100.0 32 ............................. CCCTCAAATCAGACGCCGTTACCATCGCAGTT 161351 29 96.6 32 ..........................A.. TACGCGTACAGGTCTGGCAAAATCAGCTTCAT 161290 29 100.0 32 ............................. ACTGGTCCCGTGATCTTAACGCCAGGATTCAG 161229 29 100.0 32 ............................. GCTACCGCCGATAACACGAAACGCATCGGCCC 161168 29 100.0 32 ............................. CGCCCGGTTATCGCCAAAGAACGCCAGAATCA 161107 29 100.0 32 ............................. CACCACGAGTAACGAAAAAGCACAACACCACA 161046 29 100.0 32 ............................. TACATATCGAACTTGCCCATTACTAACACCTC 160985 29 100.0 32 ............................. CGTACAGCAACGGCGGGTAATGGCGAGCGAGG 160924 29 100.0 32 ............................. CTGTTCCCGCTCGTTCAGGTCGGTAACCGGAC 160863 29 100.0 32 ............................. TATGCACAGCAACCTTTTCTATCGGTGAACAC 160802 29 100.0 32 ............................. CCGGAAAAACCACAGGCCAGCTTAATGCGATG 160741 29 100.0 32 ............................. GGCTGATAATCCGGAAGATGTTGTTGTGGAAA 160680 29 100.0 32 ............................. GAACATCAGACCTTATCACCTGGTGGCAATCG 160619 29 100.0 32 ............................. CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT 160558 29 100.0 32 ............................. TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 160497 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 160436 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 160375 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //