Array 1 2059766-2061419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025837.1 Akkermansia muciniphila strain EB-AMDK-22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2059766 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 2059831 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 2059896 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 2059960 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 2060025 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 2060090 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 2060155 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 2060220 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 2060285 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 2060350 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 2060414 31 100.0 34 ............................... TTCAGCATCAGGGACATTGAAGGCCTTGCGGGCG 2060479 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2060544 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2060609 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2060674 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2060739 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2060804 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2060869 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2060934 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2060999 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2061064 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2061129 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2061194 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 2061259 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2061324 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2061389 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 26 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2553125-2549543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025837.1 Akkermansia muciniphila strain EB-AMDK-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2553124 33 100.0 33 ................................. GATTGCGTAGGGCCGCATGTACGGCTTAACATA 2553058 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 2552991 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 2552924 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 2552857 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 2552790 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552723 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 2552656 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 2552590 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 2552523 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 2552456 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 2552389 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 2552321 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552254 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 2552187 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 2552119 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 2552054 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 2551986 33 100.0 34 ................................. AGTAGCAGATTGTGAGAGTTTCCGGCTTGTGATA 2551919 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2551852 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2551786 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2551720 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2551653 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2551586 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2551519 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2551452 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2551385 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2551319 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 2551252 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 2551185 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 2551118 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 2551051 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 2550984 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 2550917 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 2550850 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 2550783 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 2550716 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 2550649 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 2550581 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 2550515 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 2550448 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 2550380 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 2550313 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 2550246 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 2550179 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 2550111 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 2550044 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 2549978 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 2549911 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2549844 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2549777 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2549711 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2549644 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2549621] 2549575 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 54 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //