Array 1 2536896-2538315 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025832.1 Akkermansia muciniphila strain EB-AMDK-17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2536896 36 100.0 30 .................................... TACAAAATCTCCGTAGGGTCTGCGTCATCC 2536962 36 100.0 30 .................................... TTGACCGCCGAGGTAAAGTACTGTATGTCA 2537028 36 100.0 30 .................................... ACAGGGACTGGCCGCATGTCGATTGCACCG 2537094 36 100.0 30 .................................... CATACCGGATTGTTTCTGCATAAAACACCA 2537160 36 100.0 30 .................................... CTGACGATATTTTTAGGGGTACGGGTGACG 2537226 36 100.0 30 .................................... AGCATAGCATCGAGGAAAACAATGCCGATA 2537292 36 100.0 30 .................................... AAAAATAAAATTCTCAAAAGGTGTGATCTT 2537358 36 100.0 30 .................................... GAAATAAAACAATGAGCATTTACGACGACC 2537424 36 100.0 30 .................................... CAATCGATTATACCCCCGCAACGCACCTCA 2537490 36 100.0 30 .................................... ATGACGCACAGGCCCCAGAATCATGGGATT 2537556 36 100.0 30 .................................... CAAGGGGGTTATACCCGGCTTACTAGTCTG 2537622 36 100.0 30 .................................... TTGTATACCTGTAGGGGTGCAATTGACATG 2537688 36 100.0 29 .................................... AAGCCATCGCGCTCGTCACTTCTTTCACA 2537753 36 100.0 30 .................................... CTTGGGACGTTAAACCGTCCCTTGCGGATT 2537819 36 100.0 30 .................................... CAACTGCCTTCTCTGCCATCGTGGGGAGCT 2537885 36 100.0 30 .................................... CCTAAGCGTCTGTCATGCACAATTGCGAGG 2537951 36 100.0 29 .................................... TTCTGCTTGGGCACTATCGCCTCCCCCTG 2538016 36 100.0 30 .................................... CAACTACCCCTAGGTGCTTGGTGTGCTGCC 2538082 36 100.0 30 .................................... GGTATTGAGCCAGCATTCACGTTCATCTTC 2538148 36 100.0 30 .................................... CACCTCAACCCATGATTGAAATTTAGATAG 2538214 36 100.0 30 .................................... CTACCGTTGAACCATACACCATTGAGCCGA 2538280 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACCTGGAAGAACATCAACCTGAAATCCGGCCTGGTTTCACTGGCGCCCAGCCATACCAAAACAGGCGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGCGCCATCCTCAGCCGGACGTCTTCCGCCGGTTCCCCCTCCCGTCCCGTTTGCCCGCCCAACTGGGAAAAGAAATGGATGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTGCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTTCAGAAGGAGATGGGGCACTCCTCCCCCTCCCTGCTTTTGGCCCGTTATCTTAACATGGACGGAATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 2613952-2613387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025832.1 Akkermansia muciniphila strain EB-AMDK-17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2613951 31 87.9 34 .........T-..C.-................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 2613886 31 87.9 35 .........T-..C.-................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTACA 2613820 33 100.0 33 ................................. ATGTAAAGGTCGACATGTCATGACACAGAAAAA 2613754 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 2613687 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 2613620 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 2613553 33 100.0 34 ................................. CGGATCATAGCCGCGCTGGTTAAGGTGGTAGGTA 2613486 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 2613421 33 100.0 0 ................................. | GC [2613398] ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTAGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTCCTTAAAGAACCCAATTTTCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //