Array 1 70592-69968 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVB01000010.1 Erwinia sp. JUb26 Ga0304838_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70591 28 100.0 32 ............................ CGCATGCTACCAACGAAGTCTTCTATGGTAAT 70531 28 100.0 32 ............................ TCGTCATCGGGGCTGTTAACTCCCCAGGATTC 70471 28 100.0 32 ............................ TAAACCAAGAATCCTTATAACCTTCACTAGAA 70411 28 100.0 32 ............................ TCTAGCTCTAGATATAATGCCGCTTTGCTGTC 70351 28 100.0 32 ............................ ATCGAGAACGGAATGGTGGCAAGCACGTTACG 70291 28 100.0 32 ............................ CTTCAATGTACCCGTATCACTACAATCGCCGT 70231 28 100.0 32 ............................ GTTGTCAGCGCAAACTCAAACACGTAGCTCAT 70171 28 100.0 32 ............................ AGCCAGGAAGGTTGCATGCGGGTTGGTGCTGG 70111 28 100.0 32 ............................ TTGATAATGCTGGCTCCTCTGACTGGACTCGA 70051 28 100.0 26 ............................ GATAAGAGTGTCTCACTCATTGGTAA 69997 28 96.4 0 ........................T... | CC [69975] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGGATCTGTCTTCCTTACAGCAGTGCGACTGGCAGCATGGCCTGAAGGACTATATTCACTGCGATGTTATTACCCGGGTGCCGGAGAATAAAAGCTGGCGCACCGTCCGACGGGTGCAGGTTAAAAGTAGCGCCGAGCGCCTGCGCCGCCGCTCGGTTAACAAAGGCTGGTTAAGTGAGTTAGAGGCGCAGCAGAAGATTAATGCGGTAAATGAACAGCGTAGCGATCTGCCTTTCCTGTTTATAAAAAGTGGTAGCAACGGCAATGCCTATCGATTTTTTATTGAACATGGCCCGCTCGGGTCAACGCCGGTTCATGGCGAATTTAGTTCCTACGGCTTGAGTGCCACTACTCCTATCCCCTGGTTCTGACCCTTTTTTTTCCTCCAGCGCTAACCTGTTGATTTTCATTAGCGTTGGAGGGGCCGTTAGAAAGAGGGTTTTTTGAGGGTATTTGGTTTTTCAGTCTGTGTTACAGATGGTTAGATGTTTTCATAACA # Right flank : TCACCCGACAACAACTCAAAACCAGCAGCAGCATCATCCGCTGCTGCTGGCGATCAAACGTTTACCCCAGCAGCGCCAGCCGCAGATCCTCGATCAAGTCGTCTTTATTTTCGATGCCGATCGACAGGCGGATCGTCGTGGATTTAATACCTATGCGGTCGCGGACCTCCAGCGGAACGCCGGAGTGGGTGGTGCTGGCCGGATGGCTGGCGAGGGATTCGGTGCCGCCGAGGCTGACCGCCAGCTTGAACAGCTGCAGCGAGTTGAGGAACTTAAACGCCGCCGCTTCACCGCCGTGGATATCAAATGAGAAGGTGGAACCGGCGCCGCTGCACTGGGCGCGATACGTTTTGCCCTGCGGCGAGTCGGCGTCCAGGAACGGCAGATAGTGGATGTGTTCCACCTGTGAATGGTCGCGCAGAAACTCCGCCACAGCAGCCGCGTTGTCATTGGCGCGCTCCATACGCAGCGCCAGCGTCTCCAGCGATCGTCCAATCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 80548-79199 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVB01000010.1 Erwinia sp. JUb26 Ga0304838_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80547 28 100.0 32 ............................ ACCATTTGAGCGCGACAGGACATAAACGTCCA 80487 28 100.0 32 ............................ TGTGCAGATGCGGGCGACTGGGCTGCATATAC 80427 28 100.0 32 ............................ ATCAACTTCGAAACTACCATCTGTTTATCCTC 80367 28 100.0 32 ............................ ATCAACGACCTGATCTTCTCATCAACAGACTT 80307 28 100.0 32 ............................ AACTCTAATGCGGGTGCTCGCATCAACCAGAA 80247 28 100.0 32 ............................ ACAATATATTTGCCGCGCCTGCCCCTGAAATT 80187 28 100.0 32 ............................ TGGAATATCACTTTGCAATCACCGTTAAACGC 80127 28 100.0 32 ............................ AGCATTACCGCCAGCTGCTGGATGCTGATCGG 80067 28 96.4 32 ...........G................ AGCAACGCCGGAGCAGTGGTTCCAGCATTACC 80007 28 100.0 32 ............................ TTTACCTGTTCAGGAAATGATGACCTTTTTTA 79947 28 100.0 32 ............................ GATTTAAGCGACTCAAGCGGATGCATCACCAG 79887 28 100.0 33 ............................ AGCGGCTGTGCCATTTGCCGGCGCACCGAATGA 79826 28 100.0 32 ............................ TGCCGCAGTTTTGCCCGAGAAGGATTACCTTT 79766 28 100.0 32 ............................ TGCAGGGCAAGATTATAGGCGCTGGCCATCTC 79706 28 100.0 32 ............................ ATTCTGCCGCGCTCACACGTCCCAGGATGGAA 79646 28 100.0 32 ............................ ATCGAGGAAATGCTGATGCCCTGCTCGATACG 79586 28 100.0 32 ............................ TGACGGCCGCGCACGCACACCCGGGAACCGGG 79526 28 100.0 32 ............................ TTATTGATGAGGCAGATGCTGGTCTATTTCCA 79466 28 100.0 32 ............................ AAATCGCAAAACTCTGCATCTGTCAGCTGCAG 79406 28 100.0 33 ............................ ACAAAAAAAACCATGCGACGGGCATGGTTAATG 79345 28 92.9 32 ........GG.................. ACTAACCACGGCACGTCGCCGCGCAATCATGG 79285 28 100.0 32 ............................ TGACAGGTCCACCTCGTCAGACTTCACACCGT 79225 27 89.3 0 .....................A.C-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATAAACCTGCGTTTGAGGCGAAGCAGGGCATATGGGAGAAGTGGACCATCTCCGGTGAGGGCGACATGATGATGCATCCCTTCCACGTTCACGGTACCCAGTTCCGCATCCTGTCTGAAAATGGCAAACCGCCAGCCGCGCACCGCAGCGGCTGGAAGGACATGGTGCATGTAGAAGGCGGGCGTAGCGAAATTCTGGTGCGCTTTAACCATAAGGCGGACAAAGCCAACGCCTATATGGCGCACTGTCACCTGCTGGAGCATGAAGATACCGGGATGATGCTCGGCTTCACCGTGGTGTGATGGCGTGAGGGCTGGATTGCCGGGGCAGAAAGCATATTTTTCCCCGGTGGGACCGGTGAGTTGATACCCTTTTTTTTACGGATTTCTCAGTTTTTTGATTTATATGGATATTATTGTGGTTGAGAAAAAGAGGGGTTAACGAGAGTTTATAGCGAAAACCTGATTACCCTCATCGGGTTATCGTGAGAAGCTAACG # Right flank : TCAATCGCTATCAAAAATCGTGTTATCCGTAATTGAAAAATATCTAGCCGACGAAATAATAATCAGTGCCCGTGTTGTTATCACATTCACTATGAGCAAACAGTATTCAAAAACCGCCAGAGGATCAGTATGGAAACGATCGGCTCTTCGGATTTAAAGACTATCTTGCATTCCAAACGTAGCAATATTTATTACCTGCAATACTGCCGGGTTCTGGTAAACGGTGGGCGTGTGGAATATGTCACGGATGAAGGTAAACGATCGCTTTACTGGAATATCCCCATCGCAAATACCACCGTAGTGATGTTAGGAACCGGCACGTCGGTGACTCAGGCTGCAATGCGTGAGTTTGCCCGTGCAGGTGTACTGGTCGGATTCTGCGGAGGCGGCGGTACACCACTGTATGCGGCGAATGACGTTGAAGTCGATGTTTCCTGGCTTAGCTCGCAAAGCGAATATCGGCCTACCGAGTATTTACAGCACTGGGTCAGTTTCTGGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //