Array 1 38015-37177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIMZ010000028.1 [Clostridium] symbiosum strain MSK.1.7 NODE_28_length_50738_cov_276.02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 38014 33 97.0 33 ........C........................ GGAACCCATCTTCAGCATATGCAAAATTATGAA 37948 33 100.0 34 ................................. TTTTTGGTTATCAATTTACGCTTTGGCAGGTTTT 37881 33 100.0 34 ................................. CTATTTTTTTGTTTAATAGTTCTTTGCGCTTTTC 37814 33 100.0 35 ................................. TCCGCAATACCATCGACAGTCTTCATCGAGTTGTC 37746 33 100.0 34 ................................. TATCTGGAGGGAATCCACCTGGTCATCTACCCAC 37679 33 100.0 35 ................................. TGTTTTGTAATCAAATAACTTAGCATGATATACTT 37611 33 100.0 34 ................................. TTCGAGTAAATTTGCTAAATCTTCAATTTTTGCC 37544 33 100.0 35 ................................. GAACAGCAACTGTTAAGTTGATATTACGATATGCA 37476 33 100.0 33 ................................. CGTCCCTGGCTATATGTCCATCACTGACTGGCC 37410 33 100.0 34 ................................. ATTGATGAAAGTTCAACGACCTCTCTATGCGCTC 37343 33 100.0 34 ................................. TTTCGCCCCATTCTCGTGATAAAAATCTGACCAT 37276 33 97.0 34 ...........T..................... TATAAATTCATCTGGTACGTCGATCCGCAAATCT 37209 33 90.9 0 ........A............A......T.... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 98.8 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGCTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTCAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGCAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACCCGGAGATAAGCAAAAATACGAATAATAATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 39265-38762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIMZ010000028.1 [Clostridium] symbiosum strain MSK.1.7 NODE_28_length_50738_cov_276.02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 39264 33 100.0 33 ................................. TTCGACAAATCCGTTACAGAATAAAGCAATAAA 39198 33 100.0 34 ................................. ACACTCACAAAATATTATGTAACCCTACCTATTT 39131 33 100.0 35 ................................. TGCCACTTTTATGTAATCTGTCTTTCCCGTTTTGA 39063 33 100.0 34 ................................. CACAAAGTCCGTGATGTCCGCAAAGGCGATGTCC 38996 33 100.0 34 ................................. ATGTAATGCACCAATTCTTTTAGCATTACGATAC 38929 33 100.0 34 ................................. ATAGCCTTGTCTTCCTAGAATATATTATGCGAAA 38862 33 100.0 35 ................................. ATCCTCCTGGTCAAACACTTCGGTCAGCACTTCAT 38794 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : GAACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTTTGAAGCGGAATTATAATCTATTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTAGAATTCTTCGAGCGTGACAACACATAATAAACTGCTGGGTACACAGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATCGTACGGGAAAATTTAGCACATAGGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGTTTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTAAAAAGGGAAGGGGAAAGCTTCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 65920-65757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIMZ010000015.1 [Clostridium] symbiosum strain MSK.1.7 NODE_15_length_76509_cov_244.113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 65919 32 100.0 33 ................................ AAATACCGGCTTTGCTTTGTTGTATACAAAATC 65854 32 100.0 34 ................................ TTCTTTGTATGGATACGGTTCACAAGTTTCATCC 65788 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ================================== ================== 3 32 95.8 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCTGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCAGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTTATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGTGAAGTGTATAAG # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //