Array 1 3614809-3616028 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136876.1 Escherichia coli KTE186 acHbC-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3614809 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 3614869 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 3614929 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 3614989 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 3615049 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 3615109 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 3615169 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 3615229 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 3615290 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 3615350 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 3615410 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 3615470 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 3615531 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 3615591 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 3615651 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 3615711 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 3615771 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 3615831 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 3615891 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 3615951 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [3615999] 3615999 28 78.6 0 CC..................A...C.CT | T,C [3616017,3616021] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3625088-3625655 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136876.1 Escherichia coli KTE186 acHbC-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3625088 28 100.0 31 ............................ TCAATAATGATATCAGCATAAATGTTTTTAC 3625147 28 100.0 32 ............................ AGGGTCTGATGCGATTTCCCGAAAGAAATATA 3625207 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 3625267 28 100.0 32 ............................ GGAAGCTACATTGAGCACGCACGCTCAATATT 3625327 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 3625387 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 3625447 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 3625507 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 3625568 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 3625628 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTGTTCACTGCCGTACAGGCAGCTTAGAAAATGCGGTTGGTAGGTGGTCGTAGACCGTCAGTGTTCACTGCCGTACAGGCAGCTTAGAAATTTCTGCTGTTATCGCCGGGTTGCACGAGTGCGTTCACTGCCGTACAGGCAGTCTTCAAACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3625825-3625972 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136876.1 Escherichia coli KTE186 acHbC-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3625825 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 3625885 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 3625945 28 85.7 0 ....................TC.TC... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGTTCACTGCCGTACAGGCAGCTTAGAAACAGACGGTTTCCGGTTGTGCTCAAGGCACTGCGTTCACTGCCGTACAGGCAGCTTAGAAACATTCCGGACTGGCATCAATAGCAACCGGAATGTTCACTGCCGTACAGGCAGCTTAGAAAGGAACCGTGGCGGCTCGGTGGTTCTAGAGATCGTTCACTGCCGTACAGGCAGCTTAGAAAGGTACCTTGCAGGCTCAAAAATTGCTTGATTTTGTTCACTGCCGTACAGGCAGCTTAGAAATTTTGGGGATACCTGTGTAAACCTTGAATTCTGTTCACTGCCGTACAGGCAGCTTAGAAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTT # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //