Array 1 190127-188233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFA01000009.1 Porphyromonas macacae strain COT-192 OH2859 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 190126 30 83.3 36 ....C.....G.G.A.T............. ATTCAGGCTACCTCCCTTGACTGCTATTGGAAGCAA A [190109] 190059 30 93.3 36 ............G.T............... GATTTGCCGGACGGGTTTTGACTAAAACCGCCGCCA 189993 30 100.0 38 .............................. CTACAATCAGGTTCCAGGGCGGCGGTGCTCCCGGGGAC 189925 30 100.0 35 .............................. TTTTAACGCGTGGTTTCAAATATGCCTTCAATGCT 189860 30 100.0 36 .............................. AGGAGATCGACACCCTCTCCGCCCTCATCGATCAGT 189794 30 100.0 35 .............................. TTAAAGAGATAAAAAACATACAAATCGAAAGCAAA 189729 30 100.0 37 .............................. ACGGAGAATTACGAAGCGCAGTACAAGGCGTTTCGGA 189662 30 100.0 37 .............................. GACACCTCCAATATCTACTGTTTTCCACAAAGCCTGA 189595 30 100.0 36 .............................. AGCAAAAAAGAGAATGGATAAGTATGCAACAACCAA 189529 30 100.0 37 .............................. AATCAATTAAAATTTGCAAGAATGAAAAAGAAAAAAA 189462 30 100.0 36 .............................. CGATTAAGGATGCTTCCGACGAAGCTAAACGCAATT 189396 30 100.0 37 .............................. ATTTTAGGGTGATTGCAAAACGCCCTATCCCTCGTAT 189329 30 100.0 37 .............................. CGTATCAACATCTTTGTGTTTTAACGGGACTAAATAT 189262 30 100.0 36 .............................. TGAAAACCTTTGACGGTGAAATCGTTCCCCTTTTTA 189196 30 100.0 35 .............................. ACCTTGTTTGTACATTAAAGCACGTTTGGACATCT 189131 30 100.0 36 .............................. TCGGTCCGAGTTGCGCGTATCCCTGCATGATAGCGA 189065 30 100.0 37 .............................. GTTAAGACTTTCGATGGTGAAATTATTCCTCTTTTCA 188998 30 100.0 36 .............................. AACGCAAAATATGCGTTATTTCAATATCGTAATTAT 188932 30 100.0 38 .............................. TCTGACTGCTATCCCGGAAGACCTCGATATTCAGATAC 188864 30 100.0 37 .............................. TAATTATCAAAGTCTAACTTTTAAATTTAAATACTTA 188797 30 100.0 38 .............................. TTTTCTCCAAGGACAGAAGCCTCTGCACCGTCCACAAA 188729 30 100.0 39 .............................. GGTCAAAACATACAAGGTCAATGCCCCAATCGTTCTTCT 188660 30 100.0 36 .............................. TGATAGTGAAAGAGGTAACGGAGGATATGGTTCTAC 188594 30 100.0 35 .............................. ATATATGCCTCTATTACAGACACGACATCTTTATC 188529 30 100.0 35 .............................. CTTTCCGGAGTTGAATATTATTGGAAAGCTGTCGA 188464 30 100.0 36 .............................. AAAAGCCGCCCGCGAATATTCATTTGACACAGACGG 188398 30 100.0 38 .............................. AAGGGCTTGTTTGAGTTGCGAAAGGTAACAATCAATGT 188330 30 100.0 38 .............................. TTTGACCTTGAAACGACCGGAGTAAATCCCGGCAAGAA 188262 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.2 37 GTTTTAATTCCAATCTGGTACAATTGAAAG # Left flank : GTTGTCTTTATATTTATCTAAAAACTCTTCTGCACTTGAGAAAGCGATCTGATTGATGTAGCGTTCGACTTCATCCTCCGTCATACCGATACCCTCGTCGCTCACCGTAATGGTCTTTGCTTTCGGGTCGAAGCTCACAGAGACTTTCGGAGTGCCGATATCTCCTTTTACTTCACCTCTGGTTGCCATGGTTTTGAGTTTTTGCGTGGCATCTACCGCATTGGATATAAGCTCACGAAGGAAAATATCATGATCGCTGTAAAGAAACTTCTTGATAATAGGGAATATGTTTTCACTTGAAACCCCGATGTTACCTTGTTTACTCATTGTTTTTGAAAATATTTTGGTTGTTTTTGAAATCTTTTATTACAAACAAAGTGCCACACATGCAAGAGTAAATCTTCAACTGACATTCTGACCGATTAATATCCCAATTAAGCCTAAAAGACAGTTGATACAATTTAAAAAGTTATTCTAATGTCTATATTCACAGCCATCCG # Right flank : CCGCTAAAAACATACTCGAAATTTACGAAAACAAAGGCTTTTCACCAATTATTTGATGACTTTTTTCGTTCTTCAAGTTGTCGATCCCTAATCCTATAAAAAGACTTAGGTTACGACAACATATCTATTACATTGATTATAAAGCATTTCAAAGATCGCCAACAAATTTTTATCTTCTTTTATTTATGAAATTGCAGAGATCGACAATAAAGAAGCTAAGCTTTATTCACAAAAACACTGAAGTTGAAGCTCTTTCTCGTCCAATAATTTCTTTCTCTAACCAACGTTCTTGTCTGGAGGAAAATATAATCAGGCTATCTACATCATTATCCATAAAATCTTTTGCCAAGGATTTTAATTCTAACAGTTTCACCTCAGACAGTTCCCCTTCAAAAACGGAATTTTGAATCCAATTAAGATATTTTCTACACAATTTAAGCATTTTTGCCACACGCTTTTCACCAACATCATAAACTAAAATAACATACATTACCAATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCAATCTGGTACAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //