Array 1 1506-3048 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOII01000026.1 Natrinema pallidum DSM 3751 contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1506 30 96.7 36 .............................G GGTCTGGTACGCTCGGTCGTCGTGGCTGGCGCACTC 1572 30 96.7 37 .............................G CGTCGACGCCGGCAATCACTCCCCCTCCACTTCCCAG 1639 30 96.7 37 .............................G TCGGCAATATTGCCTGACGAATTATGTCCGTTGATTA 1706 30 96.7 36 .............................G GATGCCGGGCTCCGCGGGGGCGAGTTTAAGAACCTC 1772 30 96.7 38 .............................G CCCTCTAACTTCCCGACCCCCCCAGACACCCGCATTTG 1840 30 96.7 34 .............................A GGGAGCGGCAGGAACGGGCCGTCGACGGTCGACG 1904 30 96.7 35 .............................G GCCGATGTCCTCGGCGGTCGGGAGCGCCTCCATGA 1969 30 96.7 35 .............................G TCCCACTTGACAAAGACTTACCAAAGTACTACCGG 2034 30 96.7 37 .............................G GCTGTAAGCGCCAACGTACTCTGGTTCTCGCTCCGGT 2101 30 100.0 34 .............................. GACGCTGGCCTCGTTCGCGGGGCGGTCGATGTCG 2165 30 100.0 36 .............................. CTCGTCGGTGACCCGGATAGCCTCCAAGCAGAGCTG 2231 30 100.0 35 .............................. GAGTACGAGAGCGCCGACGAGTTGTGGGCGATCCT 2296 30 100.0 35 .............................. TCCAACGTCGGACCGCACAACGGGATTACTGACAT 2361 30 100.0 36 .............................. ACGCCCCACTTGAGGACCTAGCCGAGACGCTGGCCG 2427 30 100.0 35 .............................. TCGACATGGTTGGCGTATCTGCGTCACCAGTGCCG 2492 30 100.0 36 .............................. ACGAGAGTATCGAACACGAGGAGGGTGAGATCGCCG 2558 30 100.0 37 .............................. GGATACGCGGGCTTGTTTACCACAACTGGGGCAGGCG 2625 30 100.0 36 .............................. GCGTCCTCATGCTCGAGATCGTCCGGCTTGCGCCGC 2691 30 100.0 36 .............................. GGCCTCCGCGTCGCGAGTCTGGTTGAGCACGGCACG 2757 30 96.7 35 ...................A.......... CCATGAACAAGATTGCTTAGGTTAGATGGGGGAAA 2822 30 100.0 36 .............................. CGTCACCACCGTCGTCGTCGGAGGTGATCGCCTCGC 2888 30 100.0 37 .............................. TTTTTCTTTTTCGATGTGGAGCTACTACTGCTCTCGC 2955 30 100.0 34 .............................. TGGTTTGACGAGGCTTCGACCGAGCTTACCGCTC 3019 30 80.0 0 .......GC...........T...T...TA | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 97.8 36 GTTTCAGATGGACCCTTGTGGGGTCGAAGC # Left flank : ACAGCGACCTCGTCGAGACCACGCTCGACGAGGTCGCGGAGATACTCTGCCAACGTCGGCGTCAACCGCTGATGGAATCCACCGGGAGAGATCGTTTCATCAGCTGTGGAGTTGTAGCAGCGTCTGAACCCGGCGAGTGTTCGGCTCTCGCCTGCGGCGAAGCCGAACACGAGCGCCCACACGAGGACGGGAATCTGAAGCTTGCCCTCTCGCTCAACCACGCCGAGTTCCTCGGCGTGCTCTTCGAGGAACTCGGAGGGAAACAGTGTAGTGAGCCGACGCATGATTCTCGTTGAGGAGCGAGGGTTGTGCACAGACTTCTCCTCCTCATTCCTCTCGAAAAGTAGCCTCGATAAGCCGTCGCTGTCACGCGGTTCTCGTCTTAGCTAAAGACGGATGNCACAGACTTCTCCTCCTCATTCCTCTCGAAAAGTAGCCTCGATAAGCCGTCGCTGTCACGCGGTTCTCGTCTTAGCTAAAGACGGATGCTCCAGCCATTT # Right flank : ATGAAGACCGACCTCGTGACGATCGCGACCGCGACGGTTTCAGACAGACCCAAGTCTGCGCTCGAGCGCACATCTTCGATGGGACTTCGGAATAATCGAAGAGGTAGCACCGATTGCTAGGAATCGATCCGACTTCGCCGGGCCTGGCGGCTATTGGGAGTCGGAGCGAACCCCTCGACTAGAGGTATTACACCGTGTACTCGAGTGGGCATAGACAGCGATACATTCGAAGATAACCTCACCGAGCAAGGACTCAGGACTAGGTGAATACCTATTATCGGAGCGGTCCCGTAACGGAGGGACCGGCCCGATGATAATGCATCTACTCGTCGACGACGTTCGCCACCATCTCGTCGAATGGGTCGGATTTCTCATGAACGTCTCTACCGGTGCCGACCGATAGAGACCTGGAGAATAGGTAGCGGCCCGACGACTGAGACCGGAGAAAGTTAGTCCAGGAGTAGAGAATCGTCGGTGTCTTCCAGCATATCGTAGATCGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1461-2479 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOII01000025.1 Natrinema pallidum DSM 3751 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1461 30 100.0 37 .............................. GAAGCCAGCGATGGTTCTCAGTGGTGGTGATAGCAAC 1528 30 100.0 33 .............................. CTTCCTGAGTACCACGCATAGCTCCCGTACCGC 1591 30 100.0 38 .............................. TGATTTGACCATTCACTCGGTCACCGGGCTCGAGGACG 1659 30 100.0 36 .............................. GAGGACGACGCGACGGGACTAGGGCCGGACGACCTC 1725 30 100.0 33 .............................. TTGCGCATCAGGTACCCGCTCTTGCCGCCGCCG 1788 30 100.0 36 .............................. CACAATTTCGTTGCCGTCGAGACAGAGATGCCCGCC 1854 30 100.0 36 .............................. GGTCGTCAATATGATCTCTTGTGGATCTTTGTACTG 1920 30 100.0 35 .............................. TCTCACCTCTGCGATTGCATCACTTGCAATCCAAG 1985 30 100.0 37 .............................. TCGAATGGCGATACGACAGCGAGGAAGAGATGGTATA 2052 30 100.0 36 .............................. ACGACGCCGTAGAGTCCGCCCGAGAGTCCACACAGC 2118 30 100.0 37 .............................. TGGGATATATCGGGCCTGAAAGAACCCCTTCATAGTC 2185 30 100.0 35 .............................. TGCCCATGTGGTCGAAACGCGGACTAAGGTACCCT 2250 30 100.0 37 .............................. TCGATCGCGAACGACGCGACCCTCCGGATCGCCGCCG 2317 30 100.0 37 .............................. GACTTGGACTCCGGACCCCGGCCTCTCCGAGAGCAGC 2384 30 100.0 36 .............................. AGGACGTTGGTTCCAAGGACCCACAGGATCGCCCCG 2450 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 36 GTTTCAGATGGACCCTTGTGGGGTCGAAGG # Left flank : GATCGATCACCCGGATTTGGGAAAGAAGGTGAGCTACCAGTATCTCCTCCGTGTCGAAGCGTACAAACTGAAAAAACACCTCCTGACCGGCGAGGAGTATGTTCCGTTCCGACGGTGGTGGTGAGTATGGTCTATGTCGTCGTGGTCTACGACATGGAAGCCGACCGTACTCACAAGATGCTGAAATTCCTCCGGCGGTATCTCACACACGTTCAAAACTCCGTACTCGAGGGGGACGTGACTGAGGGCGACCTCGAAAAAATCCGATCCGGCGTCGATGAAATGCTCAAACCTGGAGAATCAACGATTATCTACCGCGTCTCCTCCGAAAAGATGGTCGAGAGATCTGTCTTCGGTGACGATCCCGCCGCCGACGATCAGTTCCTCTAACGATCCGATTGTTCCATCGACCCCCTGGGGTTCAGAGGTTATCGCGGGTCGACGGAAACGATGAAGTGTGAGCGGCCAATAGAGCTGTTTACGTGGTCTAATTGGCCATG # Right flank : CGACTCGAAGGTAGCCTTGTGACTCCAGCCATCATTCGTCTTTAGCTAAGACTCACACCTCGGTTGCGTAGCGGTAGCGAGCGTCTCCTGTAAGACCGGACGTTGCTGGTGAATCTTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTCGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //