Array 1 41857-42747 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJDLX010000005.1 Streptococcus mitis strain DFI.1.23 DJIFLFCI_5, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     41857	    36	 100.0	    30	....................................	CAGTCTTCTTCTCTTTTAGTTCAATCCTAT	
     41923	    36	 100.0	    29	....................................	TTCAAACGAGTCTGAAGCTATTCAAGATT 	
     41988	    36	 100.0	    30	....................................	TTAAGAGAAAACGTGATGGCAAAATCATGC	
     42054	    36	 100.0	    30	....................................	ACTACACTATTATTCACGTTTTCTAAGTCT	
     42120	    36	 100.0	    30	....................................	TAGCACATTCATGAAGAAATGCTCTGTTGA	
     42186	    36	 100.0	    29	....................................	CCCTTCGACTAAGAAAGAAGTGACTATCG 	
     42251	    36	 100.0	    29	....................................	TGGGATTCCAAGTACACCGTCCGAAGTAG 	
     42316	    36	 100.0	    30	....................................	TTCGTTCAATCCTCGAACGGGGAGTGTTGA	
     42382	    36	 100.0	    30	....................................	CACCAAGTTGTTTAGAACGCTTGACTTGCT	
     42448	    36	 100.0	    30	....................................	ACTACACTATTATTCACGTTTTCTAAGTCT	
     42514	    36	 100.0	    30	....................................	ATCTGTTTCATTCCTCCTTATCTAAAATCC	
     42580	    36	 100.0	    30	....................................	CCGTTAAGTTACTTCCCCTGGCACGCTAAG	
     42646	    36	 100.0	    30	....................................	ATAAGGATAAGACTCTGGATTCTGTTATAG	
     42712	    36	  94.4	     0	..................................TT	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.6	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TGGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGAACGATTTACCAATCAGTATCCAATAAATGAAATGCCTGATGTACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGTATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAACAAAATTCCGTATTGAATCAATCAATCCAATGTTATTAAAATATTTGGAAGAATAGTATTGACGAGTTGGATTTAAGAATTTATAATGGTTTTGAGGGAACAAAATCCAAATTGACGAATTTGAG
# Right flank :  TTAGATAATATTAGCGATTCTCTAACTTATAAAAAACCGCTCAACTGAGCGGTTTTCGTCTATTCATACCCTTTTACAGTACCCATGTTCGGATGGCATGGGCAACGCCAGATTCGTCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCGTTTTCCATGACTACAGGGTTGCCAACGACTTCCAGCATGGCACGGTCATTTTCTTCGTCACCGATAGCCATGGTTTCATCTTTGGTCAATCCTAGTTTTTCAGCTAAGTGAGTAATAGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCAAGGTAGAAAGGAGCAGATTTGTTGATAGAGTAACGCTCGTAAAATTCTGCTGGTATTTTTTCAATTGCAGCATCCAGAATCTCTGGTTCATCGATGAACATACATTTGACAATTTCCTTACCAGCCATTTCTTCAGGAGTGCGGTAGAAGATGGGCATGCTGACAAGGGTTGATTCGTGC

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//