Array 1 39252-40196 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_016788.1 Corynebacterium diphtheriae HC04, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     39252	    29	 100.0	    32	.............................	GACGCTGTGACAGCGTTCACCTTATTGGTGAT 	
     39313	    29	 100.0	    32	.............................	CGAGGCGCGGGGCTAATCCCCCAAGGCGGCGA 	
     39374	    29	 100.0	    32	.............................	CCTATAGTGCTTGACAATATCGCTATCGACTG 	
     39435	    29	  96.6	    32	............................A	GCTTCGGAGAGTCCGCAAAATCATGAGTAATA 	
     39496	    29	 100.0	    32	.............................	CTGAAGTGCACCGCATGCCCCGTCGCTCACCT 	
     39557	    29	  96.6	    32	............................A	CACCCTCGGTGGTAGTGGGTTCCCCACAGCAC 	
     39618	    29	 100.0	    32	.............................	ACCCTCACGGCGGTGACGGGTGCGACTGAGAA 	
     39679	    29	  96.6	    32	............................T	ATTGAATACGCCGCTCAGTGAGCGTGATCGTG 	
     39740	    29	 100.0	    33	.............................	GCCCATTCGATGTCATCCCAGTGTGAGAGTATG	
     39802	    29	  96.6	    32	T............................	GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 	
     39863	    29	  96.6	    32	............................G	CATTCGAGGCTGCCGCCTAAGCCCCCAGCATG 	
     39924	    29	  96.6	    32	............................G	CACACCGAAACCGCTTATTTATCGGGTAAGAA 	
     39985	    29	 100.0	    32	.............................	ACGGGATTTGCGCGCCGTTCAGGAGCTTCTAG 	
     40046	    29	  89.7	    32	.............T.............TG	TTGTTAACGGATCCACGAGACACACCCAGTAT 	
     40107	    29	  93.1	    32	.............T..............G	TCATAATCAGCACTGTCAATCCTCATGTATTG 	
     40168	    29	  93.1	     0	...........GT................	|                                	
==========	======	======	======	=============================	=================================	==================
        16	    29	  97.2	    32	GTTTTCCCCGCACCAGCGGGGATGAGCCC	                                 	       

# Left flank :   CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA
# Right flank :  CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG

# Questionable array : NO	 Score: 5.81
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCCCCGCACCAGCGGGGATGAGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-12.70,-12.70] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//