Array 1 29089-27465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIM01000005.1 Lacticaseibacillus rhamnosus strain Lrh18 Lrh18_contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29088 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 29022 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 28956 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 28890 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 28824 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 28758 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 28692 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 28626 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 28560 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 28494 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 28428 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 28362 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 28296 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 28230 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 28164 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 28098 36 100.0 31 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTGAGAC 28031 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 27965 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 27899 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 27833 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 27767 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 27701 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 27635 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 27569 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 27503 36 83.3 0 .......................AA.A....G..AA | T,CA [27468,27474] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //