Array 1 162002-164071 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 162002 37 100.0 35 ..................................... TCTCTGCGGCAAACAGTGCCTATGCTGCGGGCGGG 162074 37 100.0 38 ..................................... TATATATTTCTCTATCGCAGACAATCTTCTGTTAATGC 162149 37 100.0 40 ..................................... ATTCCTATCGTGATTGAACTGACTATCAACGTGAGGACTG 162226 37 100.0 36 ..................................... CCTAACTTACAACGCCCCACTAATTCACAATATTTG 162299 37 100.0 39 ..................................... GATAGAGATGATTGGTCGAGGGGAAATATCTCTGGCCAA 162375 37 100.0 44 ..................................... CACTTTAGACGAAACTAAAATATATAGCGATTGTACAAGTCAAG 162456 37 100.0 35 ..................................... CTAAAACAGTTCCCTCAAGAGTGTTCCCAATCAAT 162528 37 100.0 37 ..................................... TTAATTTTGATGTTCCTTGGACGTGGTTTTAATTCGG 162602 37 100.0 33 ..................................... CTTGCATTTTGATAAAAAAGATAAGTAGAGTAA 162672 37 100.0 35 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCCTCAGTT 162744 37 100.0 35 ..................................... GGCAGATAGTGGATGGGGCGGTAGATGTTCGGCAA 162816 37 100.0 33 ..................................... TACTCGCGATCGCTGCATCCTCAACGCCCAAAA 162886 37 100.0 35 ..................................... GTGGCTGGGACTAGAAGGGCTAGCCGAATCACTGG 162958 37 100.0 35 ..................................... TGGCAATACACGGGAGTAGATGATACTTCTGAGGA 163030 37 100.0 35 ..................................... ATCCAGTAGCAGTTCGCCCTCATCATTCCAGTAAG 163102 37 100.0 34 ..................................... CGGCGGCGCTGCGGCTGGTGGCGTACTCACAGAT 163173 37 100.0 36 ..................................... CTTGCCATTTTGACCTTCCATATTGAACACCCCAAT 163246 37 100.0 32 ..................................... ACCTCAGTTGCTCTGTTCTTGATTCCGCACAG 163315 37 100.0 34 ..................................... ATTTTAAAATCGGTGCAACCGGAGTTCGGCTCAA 163386 37 100.0 34 ..................................... GAGAGGCAGATCACCTTGTTCTATTAAGTGAGCG 163457 37 100.0 38 ..................................... AAAAGATGTCGATCAAATGAAGCGGATAAATAGCCACA 163532 37 100.0 37 ..................................... TAAGAAGGAGAGGTGATGTTAATTCACTTAGTGGAAC 163606 37 100.0 35 ..................................... AAAGACTTTTTAGCCGAGACGCAGGCAGGAAGAAG 163678 37 100.0 33 ..................................... AGCTTCAACGGCGGCGGGACTAGCTACATTCCC 163748 37 100.0 33 ..................................... AAAAGAAATTTAGCGACTTCTGCATTCTGTTCG 163818 37 100.0 35 ..................................... GCGTAAACTCTTCCGCCCTTAAATTGCGAGAAAAG 163890 37 100.0 34 ..................................... GGAAGCGTCGCTAAAACTCAAGCTATTTTAGAAA 163961 37 97.3 37 ....................................C GTGCTAGCCCTCTAATCTCTGGTATCCATCGCCCCAG 164035 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 99.8 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAGGTTCTTAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGCCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATCGGCGGCGAAATGCCAATAGACACTACCGTATTTTTTGCTTAACTCGTGCGTCAACCTATAGGTGTTGGGCAAACAAACTAAAATTTATCGTCCCAAACCCTTACCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCTTCACCATAAATACTTTTGCACCAATTTTCTCCAACTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTTCAGACCTGGACA # Right flank : CCTAATAAAATTGTTTTTTCTAGCAAGTCGCCTGAGGTTTATATTATAGGGTTTTTTAGTCTGCTGAAGTAAAAATCTCTGCGTACCTCTGCGCTTTACTCCGCGCCCCTCTGCGTTTCAAAATATTATCTGTACCTCACTTAACTGGAAATCGCTATAACACAAATCTCCATAGCATTTCCTAGCTGCTGAGGTACAAATTTATCCGCGTACCCTGCGGGAAGACTTCGTCAATATCTGTGTCCATCTGCGTTTAATTATTGTCATTTGTAATTCATTAGGATAAGAAAAACTATATTAAGGATTGAAACAATAGAGTTGGGATTTGCTCCGTAGGTTGCGTTAGTTTCTATTAATACAAATCCCTATCAAGGCTCTCAAATCTGTCAACAGCTATACCTTACTCTCTTTGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTTTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 698679-701097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 698679 37 100.0 33 ..................................... ATACCTAGATTCCCACCGAATACAATCCAATTG 698749 37 100.0 37 ..................................... AATTCATTAAGCCTAGACGATCTTGTCTGCACTCGAT 698823 37 100.0 44 ..................................... GATGAGCTAATTTCCAATGCCAGTCTTTACGACGGTTGGCGATG 698904 37 100.0 34 ..................................... AGCAATTCTCAAATCAGCCCGCCACAAGCAATTT 698975 37 100.0 35 ..................................... GTCAATTGGTTTAAGTTGTAGCACTCCTATCTTAT 699047 37 100.0 35 ..................................... ATCGCAAGAGATGTAACGCCTAAGAGTAAAAAAGA 699119 37 100.0 36 ..................................... GTAAAAATCATGATTTTTACTATTGAAAAAATCCTG 699192 37 100.0 39 ..................................... CAATTTAACTTATTTGATAGTGATATCTATCGGTATATA 699268 37 100.0 35 ..................................... AAAGAAGTTGCAAGTAGAGCTAATTTAGCAATCAC 699340 37 100.0 41 ..................................... ACTATGTATGGGGGTGAATATTAGTGGCATTTCGTCCACCC 699418 37 100.0 34 ..................................... ACTATTCTCTGCCGCTAAATCAAAAACAGAGCTA 699489 37 100.0 35 ..................................... CAACTTACTGGGACAACCGCAGCAACCACCTTAAT 699561 37 100.0 33 ..................................... GAGTTGGTTCGACTGATAGTTGATTTGAACAAG 699631 37 100.0 33 ..................................... GCACCTGAGATGACGCAAGCAGCAAAGGCAAGC 699701 37 100.0 32 ..................................... AAAGTTGGTTCCGCCATAAAACTGATTTTTGA 699770 37 100.0 34 ..................................... GGGAACGCGCCCTTAAGGTTTATGAAATTGTCTA 699841 37 100.0 33 ..................................... TAAATCGGTCGAGCTAGTAACGCTTCGGCTTGC 699911 37 100.0 34 ..................................... AGTGGTATCTTTGGCACAATCTTCAGGATTGTCG 699982 37 100.0 33 ..................................... CGAGTTACCGCCCCTTTAATCGGTAGGGACAGG 700052 37 100.0 33 ..................................... GGAATCAGGGAAAGGGTTAGGACCTGCAAGATT 700122 37 100.0 35 ..................................... AGCGAATTAACACTTTATTAACCTTCTCTATTTGT 700194 37 100.0 35 ..................................... TAAATTCCTTAGCTAAATCCAATAAGGCCAAGGAA 700266 37 100.0 33 ..................................... TATGGAATCCTGGCAACCTACGGGCTGAGGAAT 700336 37 100.0 36 ..................................... AGAAGACGGGGAGGAGGAGAAATGCAAGCTAAAACG 700409 37 100.0 34 ..................................... CTGGATATTTATCCAAATGCCGATCCTCTATCGA 700480 37 100.0 33 ..................................... AGCTGCGCGACATCGCCAAGTATTACAAAATCC 700550 37 100.0 34 ..................................... CTAGCGATCGCCGCCGCCTTTACCCCTTCTAAAT 700621 37 100.0 36 ..................................... CCTATACAGGGTTCACAAACACTATCCAATCTAGGG 700694 37 100.0 42 ..................................... AAAAAATCCAAAAGGGCATATATCTCTTTGTATCGATTCGAT 700773 37 100.0 34 ..................................... AAGTAAGCCAATACTGAAGTTTTCGTGTTATATT 700844 37 100.0 35 ..................................... CAACCCAGAATCGGCTTATCATACACCAGAGATAA 700916 37 100.0 37 ..................................... TCCTTAATTGACTCTAAAGCACTATATACAATATCAA 700990 37 100.0 34 ..................................... GCAACATTCGTTTCTACAATAATATTGGTGTAGC 701061 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 100.0 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAGATAAACCAATCAAATATCCCCATATGTTCCGTGCTAGTGAGATTATGATTCTCACTAAAACTGATTTGTTACCTTATGTGCAGTTTGATGTGCAGCGTTGTCTAGAATATGTACAGCAAGTAAATCCCAATATGCAGGTTTTCCAAGTTTCTGCAACTACAGGTGTGGGATTAGATACTTGGTATCAATGGCTAACGCAGAAAGTAGCCAATTCTCCACAACCAGTAGTGATGTAAGCAGTAACTTTGCGTCAACCCATAGATGTTTTTCCAAACTTATGAGATTTTCTGCTGGAAAAGCTTATCCCCTATGGGTTTGAAGTGGTTTTGACTCGCTATGAGGTTGACGCAATCACCAAATCTCTTACAGTCACTGATTTCCACATATTTTTTAGGTACTACCTCTTGACAAAGCGATCGCTCAACAGCTACCTTAGTCACAAGTTCACGCAACCGCACCTTGAAAACCAAATATATCAAGCTTTCCATGCCTGAGCC # Right flank : CGTAGGAAAAAATAGATTTGTTGTACTCGCAACATTGAGTTCCAATTAATACAACGCGAATCCTTAGCCCCTAAAATCGAGAAATATTGCAACTCTTCATCAAAAAGCAATAACAAAGCAACAAAACTGTCATAAATGCTATCTAAAGTAATAATAAACATAGTTTCCTCGCTCAAGGCCATGCAAAACCAAGTACACGATGAATCTCAACCCTTAAATCCTAAAAACCAGAATCACGCACCTTGGAAAAAAGCGGCTGCATCTCTATCACTAGTACTGCTGGGATCTGGTATGACTTTAGCTGGTGGATATTTAGCAGGAAACCAGCAACAATTGGCACAAAAAGCATCTGACTTGGCCGTGAGCCGAGTAGATGCAGCACCGCCATTAGGAAATAACACAGACCCCAACTTTGTAACTCAAGTAGTACAGAAAGTTGGGCCGGCTGTTGTGCGTATTGAAGCGTCTCGGACTGTCACATCTCGATTACCAGCCGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 3 2525000-2527859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 2525000 37 100.0 34 ..................................... TGGTTTTTCTCGCGTTATGAATGTTTTTGCTTTT 2525071 37 100.0 34 ..................................... AACGTTATGCCACTTCAAGGCAATAGCTTCCGAC 2525142 37 100.0 32 ..................................... CTGCGGTCAATTGCCTTTGTGCATCAGTTTGA 2525211 37 100.0 34 ..................................... CTAACATCGCCCTAGCTAAACCAATTAAATTCAA 2525282 37 100.0 39 ..................................... TAAGGTTGAGCTAACTAATAAACCGCCGGAAGAAATAAC 2525358 37 100.0 34 ..................................... TAACTTATTTCTAACTAGTAACTGAAGTTGATAA 2525429 37 100.0 34 ..................................... CAATAATTATTAGTATTATTTCCATTTTCCTCCT 2525500 37 100.0 34 ..................................... CAGTACAAGATGCTAATACAATTACTATTCAAAA 2525571 37 100.0 40 ..................................... AAGCGTAAATCCGTTTTTAGCAGGTACATCTGGGGCAACG 2525648 37 100.0 33 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCATCAG 2525718 37 100.0 36 ..................................... CGAATCCCATCCTCTCCGTTATTCCAGCGATTTTAA 2525791 37 100.0 36 ..................................... CAAACCCTTGCTGTATATGACTTGATCCAGATGATC 2525864 37 100.0 36 ..................................... CAATTAATTTGGAATGTTGAAAGCTTTCATGGCTTA 2525937 37 100.0 34 ..................................... ATGCTTAGTCTTCCGCTACATCACAGAAAGACTA 2526008 37 100.0 38 ..................................... TTAGTTTTTTCTAGCTCTTGTTGTAGGAGTTGAATTTG 2526083 37 100.0 34 ..................................... AGACTAGTCCCGGCAAAGTGGCGGAAACAGGAAC 2526154 37 100.0 37 ..................................... TGCGGCAACAGTACATAATGCTTTTCAACTTTCAAAT 2526228 37 100.0 33 ..................................... TCTTTGGCTTTTAATTCATCTGGTTCTGGTGTC 2526298 37 100.0 35 ..................................... GAAGCATCTCACACCAGATGGCAAACTACAGCAAC 2526370 37 100.0 36 ..................................... ACTAGTACACCCTGGGTGGCTAGAGACACGCTAAGA 2526443 37 100.0 34 ..................................... AATTATTTTCTTGATTGGCTGCTGTATGGCTTTG 2526514 37 100.0 37 ..................................... AAGTCGGTAGTGATTTTAAGAAAGTTATCCTCTGCGG 2526588 37 100.0 42 ..................................... TTAGCTTAAGCCTATCCCTGACTATTCCCAGCACTTTATCAA 2526667 37 100.0 34 ..................................... AGCAGATGACCACTCAGACCAAGGACGCGGAGAG 2526738 37 100.0 33 ..................................... CAGGAATTGCAAAATCTTCAGGTTCATTAGTGA 2526808 37 100.0 34 ..................................... CTATATAGTTGTTTTGGATCTAGGTCTAAAAGTA 2526879 37 100.0 35 ..................................... TAGAAAAGCTTGGTCAATGTCTCAAGAACTTTGGG 2526951 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 2527022 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 2527093 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 2527164 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 2527236 37 100.0 32 ..................................... AGCGCCTCTGAGGTTAGCGCTTCTGAGGTTAG 2527305 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 2527376 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 2527447 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 2527518 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 2527590 37 97.3 196 ....................................T GGCGCAGCTAGGACACTTGATTCTTCCATTGCCTTGTTTTAGTGTTAGTTCGACGAAACCTAACCCCAACCCCTTCCCTACAAGGGAAGGGGCTAAAAATCCACAACCAAGTACCAAATAATCAGGGTTTTAAGCCTCTCCCCGCGTCGGGGAGAGGTTTGGAGAGGGGTTATTCCGAATTTATCAAACCCACGTT 2527823 37 89.2 0 .......C......................C....CA | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 38 37 99.6 39 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TGAAAGCATTACAGGATTTACCCTGTAATTTGCCACCGATTTTAGTTATTGACCAACAATTAAGTCGCACTCAAGTTACTTCTCGCAGTAGACTGACTCATCATAAAAAGCAGGAGTCAGAATCCATCACAGATGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACCTGTTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATGAGCGTCAACCTCTAGGTGTTTTTTTCCCAGTACCAAATTTTACGGCTGAAATGCTTATGCTGTAAGGATTTGCATCTGTTTGGCTTCAGTACGAGGTTGACGCGATCGCTTGAATCTCTTACCAGGGTAGCTTTTTCGCTATTTTTTAAGCTGCTACTCTTGACAACTCAATGGCTGAAAAGCTACCTTAGGTTCAGATTGACGCAACCGCACCTTGAAAACTAAATATAGTAAGCCTTCTAGACCCCGGCT # Right flank : AAACTCTTAATATCACCTGTACCTACAGCCGCTTTACATAGAGTTTTAAAAAACAAACCCCGACTAATTATCTATTTAAAGATAGAGGGTAGAATACTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATACGGCTGTAATGACAGCAGTAACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCTACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATGAGTAATATTGTCAACCAAGATATACAAAACCCATTGATACGCCAAGTTAAAGGGTTATCAGCAATTTTACTTAAGCGGGGACGGGCAATTTTCTCTACAATCTTGGTGACACGCCGCAGATTTTGAAGAAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAACCATCTGTACCGATAATATCAGACAAGCAGC # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 2714251-2714434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2714251 37 100.0 36 ..................................... GACAAAGGTAAAAAGACTTGGAGTTTGGAGGAACTT 2714324 37 100.0 37 ..................................... TTCTCCTCCCTCCAGCGTCGCACCACAGGAATACTCA 2714398 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 37 GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Left flank : CGATCGCTGCTTATAATTCTCGCCGAAGAACCTGATTGACAAAAAGCAGAACCTTGAAAATAGAATAGATATAACTAATAGCGCCGCAGTTCATGCTTTGTTCAAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGGAAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGAGGACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCACCTTAATTATTTATTTTTGGCAAACCACAAGCGAGGTCAATTTTCCAGGGAGGTTTGCCAAAAGTCCAAATCCCTTGTCTAGTCTGCGTTTTATTTATTGGTATGTTTCGATGATTCGCCTTGAAGGGTGAAGTCGAGAGCAGATTTAGACACCTTTGCCAAAATCACTTTTGGAAGTGTCTCTAGATAAGGGTTTGGTCGGGCGGA # Right flank : GACCTTCATGCAAGGATATAAAAAATTTTAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTTCCCTGACCGAAACAGTACCAATAAATCAAAGCTATTATAATAACAGCTTCTAATGCCAATACACCTTGATGACTAAGTAATTTGGCAACGCGGACAACAACTTGGCAATACGGACAACAATTTGTCAACGCAGACAAAGAATTTGGCAATCGACAACAATAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTTAAAAAATTTATACGCCTTTTTTAGCATAACATAAATAATAGTCAATACAGAAAAGACATCTACATCTATATATATAGATGAATCGGAACGGGATTTGCTTGCTAGGATTAGATTTGTATAACATTCAGTGGTAAAAGCGGATTGTGACTGTAAAACCAGACTGGTTGCGGGTAAAAGCGCCTCAATGGGAGCGCGTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 2913292-2913110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2913291 36 100.0 37 .................................... GATTTTGAAAGGCTGCATCCATTCTAGATAAGTTGGA 2913218 36 100.0 37 .................................... GACTACTCTCATCCAAAGGTACAGATGGTAGTGATAG 2913145 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 99.1 38 GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Left flank : TTTAATTCACTAATCTGAACCTTGAAAATATAATATTTGTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGTAGTTAGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAAGCTTTTAGCTGTAACTGTTATTTATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCGAAGCGGGGTCAAAATCCCTGGGGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTAAATCAAGGAATCATCTTGTCAATTGATTTATTTTTTTGATTTTCGGCACAAGCAGCTTTTTCAGGGACGTGTCAATTAGACATCTGAAAAGCTTGTATAACAAGGGCCTAGACGGGAACA # Right flank : AAGTTACAGTTATTAGGTGGGTTGAAAGTAGTAAATGCTTGTTATTTTAGGTTTAGACCTCAAAAAAATTACAGATATAACTTCGAGAGCTAATGTAACCAAAAATAATACTTAGCCCAGTGGAGTGCTACTATGTAACTGCATAGAGGAAAAGACGATGACAAATAATTTGTCGCTATGATATTTATGACAAATATTTTGTCGCTACAGACAAATAATATGTCGCTCTACATATAACCAACAAAAAAGGCTTGGTCGGGCCAAGCCTTTATGTATACCAAGCATTTACTACACCAAGCTTAATTTAAACCCTCTAGCACTTTAGTTCATCTGTCTTTAGACTGTATGCAAATTCTTTCAAACCTGGTATGAACTGGCATATTTACATACAAAAAAGGCTTGGTTCAACACCAAACCTCGATAATTGCTGTGCTTAACAACGTACTAAATTAATTTAAACTGGATTGTTGTCCTTATCATCTTCCTTTAGTATGTGTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 6 3675855-3672821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3675854 37 100.0 35 ..................................... TTAAAGACTGTACTTCATAGGAGATTTGAGATAAA 3675782 37 100.0 34 ..................................... AAGTGTACAGGCAATAGTTATTCCTATCGTGATT 3675711 37 100.0 34 ..................................... CTGACGCTGTAAATAAACGCGCTGGTAATCCTGG 3675640 37 100.0 34 ..................................... GCGAGACTTGCAATCATCTGGTAGCTCATCTGAA 3675569 37 100.0 32 ..................................... ATCATTAGGGGTGAAAACTATATATAAAGTTG 3675500 37 100.0 37 ..................................... GTAATCAGTTGAGTACCCAGTTGGAGGCGCTGCGGTG 3675426 37 100.0 35 ..................................... GAGTACACTAGGTACTAAAACAATCCACCACCGAT 3675354 37 100.0 35 ..................................... TTCTTGGAGACTTAGACGACTCCATAACATTACTG 3675282 37 100.0 34 ..................................... AGGGGAAAAATGTTTTTCCCTGCTTAGTGATAGG 3675211 37 100.0 34 ..................................... GTCCGCGGGTTTAGATTTGTACTGAAATTCCACG 3675140 37 100.0 32 ..................................... TTTCCCATCGTAGATAAATAGTACCTATGTTA 3675071 37 100.0 33 ..................................... TACTCAATAGCTGAACAAGCCTCAACAAAGACA 3675001 37 100.0 34 ..................................... ACATGATTGATAGTCTTTGTTGGCTTCAGATTGT 3674930 37 100.0 34 ..................................... AAAACTAGTGCCTTGCAGCATAGCCGTGAAAGAG 3674859 37 100.0 35 ..................................... CGCCGATTACTCAGCAACCAATATCTCAGTCAAGT 3674787 37 100.0 37 ..................................... TTTCTGAGCTTCAATTTGAGCTATTTGATCACGTAGA 3674713 37 100.0 33 ..................................... AGAGAATCAACATATTGCTGACACCCACACAAA 3674643 37 100.0 33 ..................................... GAGTATTTTAATTAAAAATGAACTTAATTAGAG 3674573 37 100.0 36 ..................................... AATCCCTCTGCACCACCTGGAATAACCTTAACCCTT 3674500 37 100.0 34 ..................................... TAAAGAGGAAAGGATTGTAACTGTACCTGCTTTA 3674429 37 100.0 33 ..................................... ACGCAAAAGGCAGCTATGTAAAGTCTGCTACGA 3674359 37 100.0 34 ..................................... TACTTTCTTGCGTAAGTTGAAATACGAAACATCA 3674288 37 100.0 35 ..................................... AACGTTATGATGGGTCTGGCAGTTCTTCTTCTGGG 3674216 37 100.0 36 ..................................... ATATATGATAAATGGGCTGAGAGTAACGGTGAACTA 3674143 37 100.0 38 ..................................... CGGGGAAGCTATCTCAATACAGGAGAAAAAGTTCATCC 3674068 37 100.0 34 ..................................... ATTTTGAAGCTTAAATTTTACGCCGGAGGGTAAT 3673997 37 100.0 36 ..................................... ACTCTCAAAAAGAGTACGCTTTTTTAATTCAACAAA 3673924 37 100.0 35 ..................................... CCTGCTTTGCATCTTCATTTAGTAGTCGTTTGTGA 3673852 37 100.0 33 ..................................... TAACTCGGACGACTTACGCATGGTAACTTTGGC 3673782 37 100.0 34 ..................................... CAAACCCTATGTTTCTAAAGTTAATCCCTTTGTG 3673711 37 100.0 34 ..................................... TCCGACCAAGAACCGCCAACTTCTCCGTAATCTG 3673640 37 100.0 34 ..................................... TTCATTGTGTTAATCGCTAGCCACTGAAAATCAT 3673569 37 100.0 35 ..................................... GTAATTATCGACGTTAATACCGTCGTGTATAACGA 3673497 37 100.0 34 ..................................... AGAGCATCTGAAGGCTGAAAGTATAGCCAAAGCC 3673426 37 100.0 37 ..................................... AAGAATCCTAAAGAACGCCAGAAAGCAAAGATTACCG 3673352 37 100.0 34 ..................................... CGAAACGGATATTTTGTTAACAAATCCTGACCTA 3673281 37 100.0 33 ..................................... GATGCTAAAGGCAAGGTTAAATCCCTATATCGT 3673211 37 100.0 32 ..................................... ACTGGTGCATATCCATGTTTCTCTGCTATATC 3673142 37 100.0 34 ..................................... TGGGCGAGAAAGCTTGATGATTTTCTAGAAATAT 3673071 37 100.0 34 ..................................... TTCTTCCCAGTATGAAAAGCCAATGGCGGAAACG 3673000 37 100.0 33 ..................................... CACGTATTACCAACAGCACAAAGACCGCATAAA 3672930 37 100.0 36 ..................................... CCAATATATCTGAATATTGTTTCTTAACCGTATTAT 3672857 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 99.9 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCCCTTTGGCAGAAAAGGGGATTTATTTGGTTTTCTCTACGGCTTACCACCAAAATTAAACAACGGCGTATTAATACCCACCGCAGATACTGGCAATTCCACTCACTACGAAGTTTTTTACCGCTATTTAGTCAACGACAACATCGCCATTACCCCTGGCTTTTTTCTCGTCACCGACCCTGGTCATATTTCCAGCAACAATGATATTTTCATCGGTGCTATCCGTACCACCTTTAATTTTTAAAATATTGCGTCAACCCATAGATGTTTTTCTGCACAGCTTCAGTTTTTTGCCTCTATGCCTCATCCTGATTAGGTTGCAGCCCATAACATTAAAATTGGGGTTGACGCAATTACCTCTAACCTTCGCCATAACAGCTTTTGAGTTAATTTTTACCATACGCTTCTTGACAATCCCATGTCTGAAAAGTTATCTTGGCTCCATGTTGACGCAACTGAACCTTGAAAACCAAATACACCAAAGCTTTGAGAGCCAAGCG # Right flank : GATTCTGCTGCGTAAGTACTCTCAACAACAACCCTGACTTTGCGGAAAACCCAACAGGGTAGCCAAAGCAATACCTAAAGGCGATCGCCCAAAATATCTACTCATTCTTTTTGTGTAGAAAATTAAACCACTTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACCTGAAATTAACAGAGAAATAACATGGCAAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAAATGGCTCTGATTTGGAAGCGAAGAAACCTCAAATCCAGCAACAACAGGTAGGTAATACCGATTTGCCAAAAGAAGGTGATGGAGGAATTAATCAAACCCAGATACAGAAAGCGATTTCTCCATCAAAATCCTATAAACCATCCTCAATAATTGCGATCGCCATTTTACTTACAAGTGCTGGCTTAGTGCTGAGTTGTACCTGGATTGGAATTCTGTGGATATTTAACCCAGAACAGGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 7 4002945-4003195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 4002945 37 100.0 34 ..................................... GCTTCACACATTGCCAAAGACAATAGACGTAGCA 4003016 37 100.0 35 ..................................... CGATATGCTAATAAATACAACCTATGCCATAGAAG 4003088 37 100.0 33 ..................................... GTGTTACTCCTTAAATCTGGATTTAAGCCACAG 4003158 37 86.5 0 ........GA........A.A...............T | G [4003183] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 34 GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : AAAGCGCGAGATTTAGCGATCGCAGCTTACTATTTACGCCAAAATAAATCTTAATTTTTGATTAAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGCAGTTCATGTTAAACCTCTGAACTGTGAAAAATCTGGGTTAGGTTGACTATTGGAAAATAGTCCTGCTTTCTGACCCTGGTAGCTGCTCACCCCGATGCTGCTGTTTCCGAACAGGAATTAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCATACCAATCCTTGTTTCCAGGCATTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCTGTGAAAGGATTTTAGCGTTTAATGGCACAAAAATTGCTCATTCAAACGGCAGTTGAAGAAGCTAGGAATATAGATCCGCGCTATCAACTCTGGAATCCTCCACAAAACAAGGATTCTATACAGGAAGG # Right flank : TAATTATGTATGTATTCATCTCCATTAGGATGGGTGAGAGTGATAATAACCATTCACGAAAGAATGGATTGAAAATGTAATACCTAACGATAAACAGAAATAGGCAAGTTATATAAATCTTTCCGGTGCAGGACTGGTTGAAATATAAAGATTACAAGATGTGGGTATGGGTTGAAAGGGTTCAAATCCGTCTGCTTAACTTTTGCTGCCAAGCATAGTGGTTAGAATAATTGTGTGCGAAATAAAGAACAAAAGTTTTTTGTTTAACCAAGGTATAGCAAAAGTTTTTAGAGCTTGAGCTAAAATTGAGCTTATGGTCTTCTATTTGATAGGACTGATGTTGACCAATCACCCCACACAATCGATTAGTCTCAAATATTGCGACATTAATTTGTGAACGGTTATCTTAAATGAGCCGCGACACTAATTAGTGAAACAGCGACATTAATGTGTGAACGGCGACATCTAATGTGTGAATGTACAACAAGCTAAGAGCTTCT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 8 5646758-5646936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 5646758 35 100.0 37 ................................... GGGGGCTGGGTCATCATATTGATCTCGCTCAGTCCGG 5646830 35 100.0 37 ................................... ACGATCGCAACCCTTGATTCATGAAATGCTTGGTAGC 5646902 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 38 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Left flank : TAGGTGAAAGTCGGGATTTAGTGAATGATGTTACCCTTTTACCTAAAAATTACTATGCAGAATCAATGCGATGGTTAATTCGAGATGAATATGGGTTACTAACTTTACCTTACTGGGTAGACCATGTAGGTTCGCGGGGAACGCGATGGCTACGTTACGAGATTCAGAAATGTCCAGTCTTTCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTAATTAGAGGATATCTTTACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAAAACTATAGAAAGTAGCCTTAATTCGTTATTCTACAAGCCTTTTAAGGATTTTATATGCTTCTAGAGTGCTTGCAATTTCCTGGAATGCTCTAAATACAAGAGTTAGGAGTGTTAAAAACTTTACTTTTGCTATGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAAGAGTAGGTGCTTGTAAAATTGATGTAGAGCTTAGGCAAGTCAGCAAATGTGGCTATCGCT # Right flank : AGGATTCCCAGAGGCGAATGTATTTACGGGTTATTGTCTTTGCTAGAAATATGTTGTCAGTGAAGCCAAGATTAGCCCTCTTGATTACCATCATTCCGAGAAATTTTACTGAGAATTTTTTCCCACTGCTGAATCTGGTTCTGTATTTGTAATTGGGGATGGGCTTCCCCCCGCCGTAGGCGATCGCTCAAATCTTGACTATCATCAACAGACAAATCCTGACCGCTCAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGATTATCCTCCTGGGTCAGAGAACTCACATTGACTGGGATCAGCTTTCTGCCAATTCTCTCGACAAACTCAGACCGACTTAAATCCATGCTGTCAGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCTCTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 9 6133805-6136308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047242.1 Trichormus variabilis 0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6133805 37 100.0 34 ..................................... TTGTGCGTCTTTTAAGTGGGGGATATAAGCGAAT 6133876 37 100.0 37 ..................................... ACGGTCAAGGCGAAACCATACTGCACGCCCCTAGTGG 6133950 37 100.0 38 ..................................... TAGCGATATCACAATAACTTTACCAGTGGTAACTATTG 6134025 37 100.0 33 ..................................... TTTGCTAAAGCAAAGACTCAACAAGAAAGTGCT 6134095 37 100.0 36 ..................................... TGAATGGCAAGAACTAAAAACTTATGTTTTTGATAA 6134168 37 100.0 35 ..................................... TAAAAACACTTCTCCAACTGGAGGAAGAACCATTA 6134240 37 100.0 36 ..................................... ATTAACTGAAGCCGTCCCCAGAGATTTTGTTTAAGC 6134313 37 100.0 34 ..................................... TGCGATCGCGTCTCTTAAGACTTCGGACTGGTTT 6134384 37 100.0 38 ..................................... CTTCATCACCTCCTTAGCGGTCGATACGTTCTTGTTAA 6134459 37 100.0 35 ..................................... CAATAAAAAGACAGGTGTACTTATGACGTTTAGAA 6134531 37 100.0 38 ..................................... ATTCTTTGTATTCTCTCAGGATGAATCAGCCTCACCAC 6134606 37 100.0 36 ..................................... CTCAGGTATCTTTCCTGAGCGAATCTACGGCGTATA 6134679 37 100.0 37 ..................................... AAAAATAGCTGAAGCCGCCAAACGGGGGAATGATGCA 6134753 37 100.0 34 ..................................... AACGACCCAGATAAAGCCAGCACAACAACCGCAT 6134824 37 100.0 34 ..................................... GAATGGATGATGCTTCTTTGTACCATTTAATGGC 6134895 37 100.0 33 ..................................... CTCAGTTGCCACCAAAGAGGCGGGTTTAATTTT 6134965 37 97.3 37 ...................A................. TATCGTATTTTTACTATTAATTCTATGCTTTGTTCTG 6135039 37 100.0 34 ..................................... TTTGTATACACCCGCCTTCTCTGCCTGTAATCTG 6135110 37 100.0 35 ..................................... GTTTTTTTTGTACGAATCCTAGATAAATATTTATT 6135182 37 100.0 36 ..................................... TACCCCCTGGCATCCCCCACTGGTTCTTCCCTGGCA 6135255 37 100.0 38 ..................................... ATCTTGCTTGGTAAATCGATGCGGCGGAAATTTGCCTT 6135330 37 100.0 35 ..................................... AGACGGATACATCGAGTGGGAGCTTAAAAATCCAA 6135402 37 100.0 33 ..................................... TACCACGGTAACAAGTCAAGCGATCGCTGCTAA 6135472 37 100.0 31 ..................................... CTCCAAGGTGTATACTATCAAGTATTTTTAG 6135540 37 100.0 36 ..................................... TGTTCCTGGGTTGGTGGGGAATGCCTTAGTATTTTC 6135613 37 100.0 38 ..................................... GCATCTTGGGTGGCATTTGCACCAAAAACTTGAGTTAG 6135688 37 100.0 36 ..................................... CAGGTATAGAAACACCTGTAGTATAGGTTTTACTAG 6135761 37 100.0 38 ..................................... GCCAACCAACTTGCCACACTCAGGGATCGTTCTGCTCA 6135836 37 100.0 36 ..................................... ACCTAAAGAAGCTTTAAACGAGATTGTGAAAAAATA 6135909 37 100.0 34 ..................................... AAAAACTTGCAGAATGGAAAAACCGCCAGCGCGA 6135980 37 100.0 33 ..................................... AAGTTTTCCATTTAAGTGCTAAAGCAATAACAA 6136050 37 100.0 34 ..................................... TAGTTATACAGAGATTATCAAAAGCCCCTGCATA 6136121 37 100.0 38 ..................................... TAACTACTCTAAATAGTGAAGCTGTAAAAACTTCAGGA 6136196 37 100.0 39 ..................................... TTAACAAAGATGGAAAGAAAACAAATACTTTCCATGTAA 6136272 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.9 36 GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : GCTATTGTCACACTTGCCAGTAACTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTCAACCAGTTGGTACAATTACAGTTATTAAAATGTGACCAAGCCCAAGGGTATTTGTTCTCAAAACCCTTAAGTAGCGACAAAGTTAGCTTGTTATTAGCTGCAAAAACACAATATTAGAACACAAAATCTTGGCTTATCCGCCATATTCAGTTTGGAATCAGAAAATTTTACGGAAACAACGAGCGATCGCGTCAACCTATAGGTGTTTTCCCGTTAATCTCAATTTTTATAGCTTAATGCCTTATCCTCTATACATTTGAACGCAGTTGACCTCTTTCCTGGGTTGACGCAACTCCTGAAAGCCTTGCTATGACTAATTTCTAGTATTTATTCTTATTGTTCCTCTTGACAACCCAATGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCGGCAACTAGTC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTGTGCGTGATAGAAATCATGCCGCATTGCATTGATGCAACGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTACATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATGACATATTGATGTGGTGCAAAACCAGTTGATTGCTTAAATTGGCGCGAAAAATAATACATACTCATTCCTACTGCTGTGGAAATATCAACCAAAGTCAAATCTTGATCAAGATTTTCATGAATGTAGGAAATTGCTTGTCTGAGTTTCCAATGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATGGTTCCACCTGTTACACAATAGTGTTTGAGTAGGTGAATACAAAGCGTGGTCGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //