Array 1 294710-300664 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI783301.1 Thermicanus aegyptius DSM 12793 TheaeDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 294710 36 100.0 36 .................................... CGAAACGCAGGATACGACAATAGCAAGATAGGCTAT 294782 36 100.0 38 .................................... ATGTGATCAGACGATGAGGGATACGGAATCCCTCGAAA 294856 36 100.0 35 .................................... ATGAAAAGTTTAATCAAGCTAAGGAGAAAGCGATG 294927 36 100.0 36 .................................... ATTACAACCCGAACCACGTCGCTCCTCCGGAAATGC 294999 36 100.0 34 .................................... AGATGCCGGAGGTGAGAACGTGAAAAACGGAAAG 295069 36 100.0 37 .................................... TAGTACAATATGGCGCGTGATATCTGCGTTTCTGTCA 295142 36 100.0 35 .................................... CGGCCAATGTTATGAACGTACATTTGAAAAGGAAT 295213 36 100.0 38 .................................... TTCCCGTGGAGATAAGCGACGTTCTCTGCGCCGTACAC 295287 36 100.0 37 .................................... GAAGCCTTCAGCGAATTTGTAAACTATCCCGTTACAG 295360 36 100.0 35 .................................... TAATTCTCTTAACTCCGGGGTGTCGATACCCATAA 295431 36 100.0 37 .................................... TACAATAACACTTGGAAATGGAGCATTCCATTTGCTT 295504 36 100.0 38 .................................... CCATCAAAAGGGCAATGGAGGCAGAGAAGATGGTCGAA 295578 36 100.0 34 .................................... AGACGTGAGCGGGAACGCGCTGAACAAGAGATAA 295648 36 100.0 36 .................................... AGATCATGCATGACGACTTTATTTATATCGTTGTTC 295720 36 100.0 37 .................................... TATTGGTCACTGCGAAATAGATAAATTTGCAAACAAA 295793 36 100.0 36 .................................... TTGGTGCGGAGTCGCGAATACGCGGTATGACAGTTG 295865 36 100.0 37 .................................... AGAACATTGTGGATGTTCGTCCTTCCTGTTCTCTCAT 295938 36 100.0 36 .................................... TAAATAGTCTCTCTACGAAGACAGGGGAGATAGAAT 296010 36 100.0 36 .................................... ATTATTCTTCAAAGCGAGAATCCTTCTTACCCACCA 296082 36 100.0 36 .................................... ATTAAGAACCATATGCAGATCATGAAGCAACTTACG 296154 36 100.0 37 .................................... AAAATCGTCCGAATCGTTAGGTTCACCGAAACTGGAG 296227 36 100.0 38 .................................... CAAAAAAAACGGCTATTCGGATTTTCGTGTTGAGACTT 296301 36 100.0 38 .................................... GTCGCGATCGCTCATCTCGTCGACACTTCGATCGGAGA 296375 36 100.0 35 .................................... ATCCCCCTTTCGCTCCTGCTCTACGAAAAAAGCCG 296446 36 100.0 34 .................................... ATAAAAAAGTACGGGTCAGGGCAACCCCCCTGGC 296516 36 100.0 35 .................................... ATACCCAGTCCCTACATAGGGCCGTTCAGGATCCG 296587 36 100.0 34 .................................... TGTATCGCCCGGGCGGGATGTTGTCATCCGCCGG 296657 36 100.0 36 .................................... GTGGCCACGATAAGTAGATAAATCGGGGAGGCATGG 296729 36 100.0 34 .................................... TTAAGCAGGTAGAGGAGATTAAGAAGGAGATCAA 296799 36 100.0 35 .................................... GGGGTTAAATTCAGTCTATGTGAAGGATATTGAGA 296870 36 100.0 38 .................................... AAATGTTCCTTTTCCATTGTCTTTCCCTCCTTTCACTT 296944 36 100.0 38 .................................... CTCATAACCTCTTCACACTCCCATCCGGGAGGGTTACT 297018 36 100.0 39 .................................... TCTTTTGGCGTAACTACCTCTTTCTTCTTAACATATAAA 297093 36 100.0 36 .................................... TTGGGATAATTAACTTCATTTCTGTTTTAATTCTTG 297165 36 100.0 36 .................................... ATCTCAAAGCAGAGAAGTTCTGTATCATGGGATAAA 297237 36 100.0 38 .................................... ACGCAATTCGGTCCCAATAATCGCGTAAACGTTCGATA 297311 36 100.0 36 .................................... CAAATGTCCTCGATCGCCTGCCGGATCGCGTCCTCA 297383 36 100.0 39 .................................... CCGTAATATAACATTTTGTGTGTTTCTCCCTTTGAGTAA 297458 36 100.0 37 .................................... TGATCAGGCAGGAAATTACGTGGGACGGGGCCTTGGG 297531 36 100.0 35 .................................... AATGGTAAGAAACCGCCGGCTTCGGAGCAGATTAA 297602 36 100.0 37 .................................... AGAAAATCCTTCGACGTACAACTCGGTGAAATCAACT 297675 36 100.0 36 .................................... CTGCCGGATTCATATCTGATTTCTACATGAAGGATT 297747 36 100.0 40 .................................... ACAGTCGGCGAAATTAACGCTTGGATCGACCGCCTTAATT 297823 36 100.0 35 .................................... CATCGATATTTTCATCTGTTACAGGAATTCCTTCC 297894 36 100.0 36 .................................... TACCGCTCCCCGCTTCTGGAACTCTACCACAACTAC 297966 36 100.0 35 .................................... GTGTGATCATTGGCCTTTAATGGTTTATCTTCTCC 298037 36 100.0 36 .................................... AAAATGGGATTTGATCTAAGTAAACTTGGAGTACAA 298109 36 100.0 34 .................................... AAAAGTTATTTTGACGTTGAAATGAGTCGAACAA 298179 36 100.0 37 .................................... TTTTCACTGTTAATTCATCATTATCCAAATATATCCA 298252 36 100.0 35 .................................... ACTTCCATAGAAACCAAGTGATAAGCCCCCCGATA 298323 36 100.0 36 .................................... GTATATTATTCTTGCAAGGAAAATTCGACAAGAAAG 298395 36 100.0 36 .................................... ACTTATTTTTATTGAGTAACTCCAACCATTCGTTTT 298467 36 100.0 38 .................................... ATAACTTTTACCGCTCCCGGGTGTACCGGTATAACAAA 298541 36 100.0 37 .................................... ATACTATGCGTCTCTTTAATCTGGAACAAATTGGACA 298614 36 100.0 34 .................................... TTTGAGGTAAAAAGGGGGACAAGCCTTGCGGAAC 298684 36 100.0 37 .................................... AAAGATGAAATACTGGCGGTCATGCAAAAATGAAATT 298757 36 100.0 36 .................................... AAGAATTTCATAGACCGGATGATCGGGAGCACGGGT 298829 36 100.0 34 .................................... CCTTCGGCCTGGCTGCCTCTGACGCTTCCCGCGT 298899 36 100.0 36 .................................... CTCTCATCGACGACCTCCGCATTTCCTCCCGCGCCC 298971 36 100.0 36 .................................... AAATTTGAACTTCAGACCAACGTCGCATACCGGCTA 299043 36 100.0 35 .................................... TTCATGATTCATAACCCCTGGTCATTTGCTGTTGG 299114 36 100.0 35 .................................... AGCTGGCACAAAATTAACGAATGGGCTTTCGGTGA 299185 36 100.0 40 .................................... AGATCAATTCTGGAAAAGCGATTTTAAACGCATTTACAGA 299261 36 100.0 35 .................................... ATTTAAAATGCAGGTCAAAAAGAAACGAGGTGTAA 299332 36 100.0 36 .................................... CACCTCCGCATTAGGCTTGTCTTCCACTGCAAGCTA 299404 36 100.0 36 .................................... CACCTCCGCATTAGGCTTGTCTTCCACTGCAAGCTA 299476 36 100.0 35 .................................... ATGCGCTGGCCGCCACAAGATCAGCTCTTACCGAT 299547 36 100.0 35 .................................... TGAACCGAATCGAAGGAAATACAAACGCAATTGAA 299618 36 100.0 37 .................................... AAACCATCGAAAGTGTATCAAGGGACTTCATTCACCG 299691 36 100.0 35 .................................... GGTTATGTGAGCGTTGCGGCGGACCGGGGAAGATC 299762 36 100.0 35 .................................... TGAACCGAATCGAAGGAAATACAAACGCAATTGAA 299833 36 97.2 37 ..A................................. TTGCTTTTGTCGTGCAAGATAGGCTCGTGGAAAGCCG 299906 36 100.0 35 .................................... AAGATGGAAAGCGGAATACACACAGGAAAAAGCCA 299977 36 100.0 37 .................................... CATTTGAGGCTATCGCAGTATTTCAGAAAGTGCTGTA 300050 36 100.0 38 .................................... GGGGCAAAATGATGCAGATTGCCCCCAAATTGCCCCCA 300124 36 100.0 37 .................................... AAAGTAGGTGCTATTATGACTTCATTTGGAGATAGGT 300197 36 97.2 37 ..........T......................... CCGGCCGCTGCGAACACATCCCCACCCCATGAGTCAA 300270 36 100.0 37 .................................... CTCCGGACGGCGGTATATACCCATCCTGATGGGCAAG 300343 36 100.0 35 .................................... CAACCAGGCCTTGCCCTTGTTGATCGCCTCTTTAC 300414 36 100.0 35 .................................... ATACGTAAAACCATTATTACTTGAAACCGTAAAAA 300485 36 100.0 37 .................................... ACAATTCGATCCGGTACGCCATTATGACCTGGGCTCA 300558 36 100.0 35 .................................... ATTGTCCGGACGCATAATGTGGAGTATTTAGCCGC 300629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 83 36 99.9 36 CCGATATTAGCAGTGACGCCGAAAGGCGTTGAGCAC # Left flank : TGCTAAGAGGTGGAGAAAGACGTTCAAATTATTAAAAGAATACGGTAATCGGGTTCAATACTCAGTATTTCATTGCGAACTCACGGATATAAAAATGGCAAAATTAAGAGTTGAACTCGACCGATGTTTAGCCCCGGAAGACAGGTTGCTAATTGCTCCGATTGACAATATTGATTCCAATAAATTTGTGATTCAGGGACCCAATCTGGGATGGGATTATCAGCAGAACGAACGTTTCGATTTTTTTTAATCCTCGGATTCAAGGATTACATTCCTTTGTTCATTTACTTTTAATAGAAATCGAAAAAACATAGAAACATTATCGGATTCGATGAACAAACGACTCAATGAGATTCTTGAAAGTGAGACAGGACATACTGTTAAACGCCTTGTATAATGTATCTAGTGGATAATAGGCAGGATTCCATGGAGGGAAAAACAATGGTACTTGAAAGGAGGTTCGAAAAATCCATACGTGAAGAGGGGTTATTGGGAATGCT # Right flank : CGCAGAGAGATCTTACTCCACATAGATTGCCGCAGTGAATAATCGCTTTACAACTTTAAAATCCCTAATAAAGTGAGCTACAAACTAGGCCGCCATGTAGATGCATAGGCGAATCAACTACTACAGCTTTTACAGATGATGATGAAAGAACCTGTGGTATATTTGGTGGTGAAGCTTCAGTGAACAGATTGGTGATTACGGTGGGCAACGAGATGATGGGCGATGATGGTGCCGGCCCGCTGTTGGCACGACTTCTGGAAAAAAATCCGATCCCCGGATGGGAAGTGATCGATGGCGGAACCATGCCGGAGAATTATTTCCATCAAGTGCAGGACATGAAACCAAAGCTTGTAGTAGTGGTGGATGCCTGTGAAATGGATCTTGAGGTTGGAAGCATACGCCTCGTTTCCGAACGGGATATTGCCCAGGAGTTCTTTTTAACTACGCATCGGCTTCCTTTGTCATTTTTTATCTCTTTTTTGAAAGAATTGGTTCCGGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATATTAGCAGTGACGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 388873-390782 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI783301.1 Thermicanus aegyptius DSM 12793 TheaeDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 388873 37 100.0 36 ..................................... AGAAAGAGATTAGCTAAACGTTATGATACAATGCAA 388946 37 100.0 36 ..................................... AGCAGAGTTTGCACCAACAAATACAACAGAACTAAC 389019 37 100.0 34 ..................................... TTCCACTACCGGGAGTGCCCGTATAACACACGAT 389090 37 100.0 35 ..................................... AAAAGGAGATCCTCCCAAACGGTTAGGGAGACAAT 389162 37 100.0 36 ..................................... TTCTATATCTGTTTTAATACTATAGAAACATTTGTC 389235 37 100.0 34 ..................................... AGTTGCACCAGGATGGTGAGAGGGAATTAATCAC 389306 37 100.0 36 ..................................... CTAAACTGGCTAATAAACGCTCTTGCGGTTGTTGTT 389379 37 100.0 34 ..................................... AATTAAGGACCTTATCTGACGATCGACCATTCTC 389450 37 100.0 36 ..................................... AGTTTCAAGGTATTCACGGAGTTTCTTTTTTGATTT 389523 37 100.0 35 ..................................... CCCATACAGGGTGGAGTATACCACATCCGGTGGGC 389595 37 100.0 35 ..................................... GTGAGAACCTGGAAGGTGTGCTGCGGGCAAGACGC 389667 37 100.0 34 ..................................... AGTTAGGCACGCAAGAAGAATGACATCTAGCCTG 389738 37 100.0 35 ..................................... CGTATACTCCTGAAAGAAGCGTAACTGATTTAAAT 389810 37 100.0 36 ..................................... AATCCGTGTCTAGTAAATCCGCCTGATCAAGAAGGT 389883 37 100.0 34 ..................................... CATCATCAAGATACCAATCCACTACATCTAATTG 389954 37 100.0 34 ..................................... ACTATATACTAAAGTCAGGAGGTGAAATCAAAGT 390025 37 100.0 36 ..................................... ATCAACAAATCCTTGAGTGCTGCTGGGTGTAAATCT 390098 37 100.0 37 ..................................... CAGATGGAAAAGTGATGACGGGGAGAAATATCAACGT 390172 37 100.0 34 ..................................... AGAAGGAAAACGTCTTGCACGACAAAGATAATAA 390243 37 100.0 35 ..................................... ATCACCACCTCACTCATTGGCTGCAAACTCCATGA 390315 37 100.0 34 ..................................... TTCAATCTCAGTGGACAGCGCTTTTCCGCGAAGG 390386 37 100.0 34 ..................................... TTCAATCTCAGTGGACAGCGCTTTTCCGCGAAGG 390457 37 100.0 34 ..................................... AGTTATCAATTGAAAAGGGGTTTTATGGCAAAGA 390528 37 100.0 35 ..................................... ATAATTGGGATGACCTTTAACGATGGTTTCTATGG 390600 37 100.0 36 ..................................... AATACCAGTCGATTGGCAACCGATGCAGTCGGTTGC 390673 37 100.0 36 ..................................... ATGTATCACGCACAGGATAAGACGATCAACACCCCC 390746 37 97.3 0 ...............T..................... | ========== ====== ====== ====== ===================================== ===================================== ================== 27 37 99.9 35 GTTGCACCCAGCCAACAGGCTGGGTGAGGATTGAAAC # Left flank : AAACCCAGGAGAAAAGTGGACAAAGAAGACTTAGGAAAGTGGCAACTATTTGTCAAAACTATGGACAAAGAGTACAAAAATCGGTGTTTGAGTGTAGGGTCACACAATCGCAACTTGAAGATATGGAGCACCAACTGTTAAAAGTTATTGATAAGGAAAGAGACAGTTTGCGGATCTATCTGCTATATGGGGATCGGAACAGGGTAACCCGAGTCTATGGTAGGGATGACTACATTGATTATGATGCTCCTATTATTTTATAATCGTAAACATTGTAGGAGACTTGTAGAAGATGATTCTTGGCGTTTGGAAATCGACATATGTGCGAACGTGGAGCAATGATGAAAGAAGGGGGGGTTCGCAATGGCGCAAAATACTAGTAATTATGCATTGGTTATTATGCGTGTCTGTTTAGATGCCAACAATATTATGAGCAGAAAATTGAGTTTCGCGTTTTTGTCTTGTAAGTTCCAGACCTGTTAAAGGATTTGAACGCGAGT # Right flank : CTCTAAAAGAAGTGTGGCAGCAGCGGGATCGTATCATTGCACCCAGCCGACTGGGCAGGTTCAATTGTTTCGATTTTTCGTTCAATTATGACTACACATCATGTTATTTTTATACCAAATATTGGTATGCATGAATATTAGGTTTACAGAAACTACCGGGAAAAAGTGATTGCAAAACGATAGAAGTCATGATACAATACCTATCGTCGCCAAAATCCACACCTGAATTACACCATATATTTTGATCAATCATCGAAGATGACTGGTGCCTCCCCAACTTGCGGGCGTAGTTCAATGGTAGAACTCCAGCCTTCCAAGCTGGTAGCGTGGGTTCGATTCCCATCGCCCGCTCCATTTCGATATGTCGGGATTTAGCTCAGCTTGGTAGAGCGCTTGGTTCGGGACCAAGAGGTCGCAGGTTCGAATCCTGTAATCCCGACCATGTTTATGGCGGTGTAGCTCAGCTGGCTAGAGCGTACGGTTCATACCCGTGAGGTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCCAACAGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.90,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 2409462-2407388 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI783301.1 Thermicanus aegyptius DSM 12793 TheaeDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2409461 37 100.0 34 ..................................... CCTTCCCCGGCTTGATCTGCTGGAACCATATTCC 2409390 37 100.0 35 ..................................... ATGGAAGAAACATGTTTATCACCTCAGTTGTATTA 2409318 37 100.0 36 ..................................... TCAACCATCTCTAGGTATTCGCCGGGAGTCAGTCGC 2409245 37 100.0 34 ..................................... TAATTTTACCAATTATCGAAGGTGATTTCAACAC 2409174 37 100.0 36 ..................................... AGTCGAAAACAACGGTAAAGTGATCCTACACATTTG 2409101 37 100.0 37 ..................................... TGGTTTAAGTCGTCGAAACAGAGAACTGTATGACGAA 2409027 37 100.0 36 ..................................... AACGCTATAAAACCTTCAGCAATCCCAAAAATCACG 2408954 37 100.0 34 ..................................... CACTGAATTTTACAATGCTGCTGCCGCGGGGCTG 2408883 37 100.0 35 ..................................... CCAATGAGGCGGCTCATTCTGAGCGGCTACAAACA 2408811 37 100.0 35 ..................................... AGGATATCATGAACGACGCACTTCAGGCGCAGAAC 2408739 37 100.0 35 ..................................... TATAACATGAAGGAGGCACAATAAACAGTGAAGTA 2408667 37 100.0 36 ..................................... GTACCAATCCTTCCCGCTGTCTACCCCTTTTATTCC 2408594 37 100.0 36 ..................................... TAAAAAGATCGACTTTGGAAGCCTGGATACGGTAGC 2408521 37 100.0 36 ..................................... TTGCCGAAGCCGCGCTGGCGGTTGTGTACGCCGACC 2408448 37 100.0 36 ..................................... AAAATTGCTTTGGTGTTACCTCGTCGCCCCACCACG 2408375 37 100.0 36 ..................................... TCCAGCGTCATGGCTTTTACATGGATGATTTCATCC 2408302 37 100.0 35 ..................................... CATCACCGGCCGGCAGATGGCGCCGTGGTTTGGAA 2408230 37 100.0 36 ..................................... CACTTCCGCGCATCATTCGTACCGCGAGATCCGGAC 2408157 37 100.0 36 ..................................... CGGAGCAGTACCTGGGCTATCTCCGAGGGAATGTGA 2408084 37 100.0 35 ..................................... AAAATATTCACCCCCTGCTTGATATTGGCAGGAAC 2408012 37 100.0 36 ..................................... TCTCGCATTACGGTGATACTGCTGTTTCAGCTTATA 2407939 37 100.0 36 ..................................... TCTCGCATTACGGTGATACTGCTGTTTCAGCTTATA 2407866 37 100.0 35 ..................................... AATTTAACCCACGAAGAAAAGGTAAAAAAATTAAA 2407794 36 94.6 35 .......A.....-....................... TTCTTATCAAACGCAATCATCCCTCCCGCCTTCGA 2407723 37 97.3 38 .......A............................. CTCTCCCAATACGGGGGAACCGGGAGGGATCCGGAGGG 2407648 37 100.0 38 ..................................... CTGTTAATATCTCTCATCCAATAAACTGCATTAGGGTA 2407573 37 94.6 35 .......A............G................ CTCCAGGACCCGTGTAATCCATCCATGAACCATTA 2407501 37 97.3 40 .......A............................. ACGCAGGCGGCGTCGATCCAGTGTTTCTTAGGATAATCCT 2407424 37 97.3 0 .......A............................. | ========== ====== ====== ====== ===================================== ======================================== ================== 29 37 99.3 36 GTTCCAAGCACCAAGACCCGATCAAGGGGATTGAAAC # Left flank : GGAAGAGATGACGGGAACTCATGTGGAAAAGGGATTTATTTATCTGATTCCTGAGGAAAAGGCGGTCCTTATTGAGATTACCCCCAAATCAAAAGAGTATGTGCGAAAGGCGATTCGGATGATCCGTCGAATTGCGGAAGGGGAAATATTTCCAAATCCGCGATCTGTGAAGAGATGTTGGACCTGTGAGCTTCGCCGTTATTGTAATGATTTAGATATCCCAAGCCGGGTGGAGCAGAAAGAAAGGGAGAGAGTGTGGATCGAAGAAATATTTGGAAACCGGTGAAAGCATGATTCTACTCTAAAAGGCCTGGATGTACGAATTGAAAGAGGAAATCTTGACAAGTTCCAGGAAAGAGATGGTATAATCAAAATGTTTTCGTGGCTGACTTGCCAATTTGAGCAAAACATCGATCTTCGAAAAAAAACGGCTGAGTGTCTACATGTGAGTGTTCTGGAACCGGCACGAATACTCATATTTTAAGTGAAAAAGAAACGCG # Right flank : ATTAAAATAAGTGGCGGCAAAAGAAAAATCAACATTATGTACAACCCGATCGCATATTTTTTCCTCCGCTGGTCAACCTAACTAAGAAGAGATGTGACCAGGGAGGATGTTGCAATGAGGGTAACATGTCGCTATGTGCCAAATGGAATCAGGTCGGTAAAAAGCCTCTCTTTTCTCCTTTGCGTCATGATCGTGCTTGGCGGTTGTGCGCCAAGGGTTCAGGGGGAGAATGCCGGGGATGCCGCGGTAGAATTAGACCGACTGCACCGGAAGGTGCTGGAGAACAGTTTCGCTTTTGACGGCTCCGCTTCACTGAGAAAAGAGAAGTTTTATGCGGACAATATTGCGATGGTAACGGGACTGGTACAGAAGAACCGGGATCTTTACATGAATATCGCCACGGCACCTGAGGCGAATGGGGCGATGGAGGATTATGATCTCTTCACCTCCGGGCGGAACCTTTACATGCGCTTTGCCGATGAGGTGGAATGGAAACCGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAGCACCAAGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 4 2420490-2418030 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI783301.1 Thermicanus aegyptius DSM 12793 TheaeDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2420489 37 100.0 36 ..................................... ATAAAACAACCCCAAGACTAATACTAGACATTGAGG 2420416 37 100.0 36 ..................................... CGCACCGGTCCCTTAGACCGCGTATCCCAACTCGCT 2420343 37 100.0 36 ..................................... CGCATTAACTGCTGTTGCTTTGACCCACGACGACCC 2420270 37 100.0 35 ..................................... ACATCTCGGCCTCGATCTCCCGGAGGCGCTTCTGC 2420198 37 100.0 35 ..................................... CCACCACGACCGCCGTTTTCTTCGTTGCTTAGTCC 2420126 37 100.0 36 ..................................... TAAAGTACTCAAGATCTACGTGTAGAGTAGGGTACT 2420053 37 100.0 35 ..................................... ATTTAAGCTCTATATCGTTTGTCGTTAAGCCTTCA 2419981 37 100.0 36 ..................................... CCTGAACTTCCCCGCGGTCCACCAGGTAACCGTAGC 2419908 37 100.0 35 ..................................... GGTGCCGGTCTTCGTCTTCCGGCGACGACCTATAC 2419836 37 100.0 37 ..................................... TTCCTTACGCTCTTTTCCCTTAATCTGCCAATCTCGT 2419762 37 100.0 36 ..................................... CCATTTATCACCCATAAATGCTTTTTTCGTCGTTGC 2419689 37 100.0 36 ..................................... CGCTTTGGTTCGCCGCTACCGATCCTGGCGTAAAAG 2419616 37 100.0 37 ..................................... GCTCCAATAGCTCGTCCTCATCCCAATACCCGCACAC 2419542 37 100.0 36 ..................................... CTTGTATCGTCGTGCTATCGGTTCACTTGATCTCAC 2419469 37 100.0 36 ..................................... TTATACCACCGGTATACCGGCACCTTTTCAAAAGCG 2419396 37 100.0 38 ..................................... CTCTTTCCGTCCCCGGCGTTCGCGATGCCCAGGTCTAC 2419321 37 97.3 37 ..........T.......................... AAAGTTAAAGCTGGACCAGTGACGTTCGCTCCTGGAT 2419247 37 100.0 35 ..................................... GCAACCGGCGGCCGGCGAGGAGTACGACATTGTCG 2419175 37 100.0 35 ..................................... ACCCAGCTCCACTTCGACGAAAGATCGTTCGCTCA 2419103 37 100.0 37 ..................................... GCTGAATGGCCGCCTGTCGCTCATGCACGGCTTGCCG 2419029 37 100.0 37 ..................................... AACACTCCCGGTAAACGATCTCCAGATGGTTCGCTTA 2418955 37 100.0 36 ..................................... TTAAACGAACCGAAACCGATACCTAAAGCTCCGAGG 2418882 37 100.0 40 ..................................... CGAAGAATATCAATGTGCTTCTCTTCCGGAACCTTGCTTA 2418805 37 100.0 38 ..................................... ATTATAGATGATAGAATTGTAATATTTGGTCACACTCC 2418730 37 100.0 37 ..................................... TTGATTGGCCGGATATTATCGTTGTCGTCGCGTTTGA 2418656 37 100.0 35 ..................................... CCTGTTCGCAGTTCAGGATGATTTCTGCCGTCTCC 2418584 37 100.0 38 ..................................... TTATCTTTGAGCCCTTTGGTTATGTGCCTTATCAGTTC 2418509 37 100.0 35 ..................................... CAATGCCGACAGACCGGATGAAGGTGTCGTATCCT 2418437 37 100.0 36 ..................................... TTTCATAAAGAACACGCATTTTGCATCCTCCTTTCT 2418364 37 100.0 39 ..................................... TCCTTAAAGCGTTCAAATCCCTTCACAAAACGGCATCTA 2418288 37 100.0 37 ..................................... GGTATGTCTCTCGGATCGAAGTGAATAACTCCGTAAC 2418214 37 97.3 39 ........T............................ GCTACAGAACTATCGCTACCTTTTACAGTTAATACCCTT 2418138 37 97.3 35 ...........................A......... CCGGTACTATCTCCGGATATTCGTTTACCATCTCA 2418066 37 83.8 0 ......................CA....A..AA...A | ========== ====== ====== ====== ===================================== ======================================== ================== 34 37 99.3 36 GTTGCAGACACCAAGACCCGATTGAGGGGATTGAAAC # Left flank : TCTCCTCATCCATCAAGAGGGGAATGTTGAAATTCCCGATTACCGTCCTTTTATCGAACAGACGGACCGGATCGTGTCCATCGCCGATGAAACCCGCTGGTTTGACTGGGAGCGATACTCCAATCGGCAAAAGGAGCGCATGAAGTTAGGGGGGGTGGTGGGAAAGATAACGTATTCGGGGCCCTGGCATCCCTATTATCGGTTTCTTAAATTAGGGGAGTGGATTCATGTCGGAAAATCCACCGTTTTTGGGTTGGGAAAGATAAAAGTGATCCCATAAATGCCCTGGTATCCCTTTGAGTGGATTAGCGATAATTGTAATAATGGGAGGCAAACTTGTTGTAAATCCTAATGAAGAAATGGTATAATCAAGAAAAATTCGTGGCTGACCTATCTTTTTTCACAATATGGCGATCTTCGAAAATTGAATGGGATCTGACTGTGATTCACTCGCCAGTAATCGCAATGAATGCTGACAAAATTCCTTGAAATCAAACTCG # Right flank : ATTAGGATAACAGCCTTCAGCGTCACAATTTAGGATCAAGGTGAAAAAGTTTATGAATAAATTTAAAAAGTTTTCAAACGCTCTCGAATTTCGGGGGCGTTTTTTTTCACGAAAACTTGATAGATGCTAAAGGATGCATCGAGTTTGATGAATTGTGAAAGGGTAGGGCAATAGATACAAAATATAAAGATGATGTTTATGGAATGATATGAAATAAACGAAGTAGGTTTTAAACAGGATCACAAGGAAAATATGCAAAATTAACATTAGGGAACATAGGTTCCATGACAATATGTTGTCAAAACCATGTGCTATGAATAAATAGGAAACTTAATAAAAAACCTTCCTACCATGATCCTAGGGACCTATCAATAAATGCGGAAATTGTGATCCATCATTTCCTTTTTCTAATGGTGCCGCATTAGCGTCATGGAGGCCTAAATACTAAGTAGTAGTTAGGGATGGGAGGGAAACGGAAAACGAAAGCGATAGGTAAAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACACCAAGACCCGATTGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 5 2529463-2525875 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI783301.1 Thermicanus aegyptius DSM 12793 TheaeDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2529462 30 100.0 37 .............................. ATGAGCACACTCTATACAAAATCGTGATCGACATCTA 2529395 30 100.0 37 .............................. GAGGACCTGGTGTTAGTGATAATTTTTTAATAACTAC 2529328 30 100.0 37 .............................. GTTGGATTGAACCTCATAAGGTGGGGTGAGGAGGCAT 2529261 30 100.0 37 .............................. TAATATGGTATCGTGGTTAAGTGCGGCGAACGCTTGG 2529194 30 100.0 37 .............................. CTTCGAGATCGGCGCTGGTCGCGCCAGCGATCGCACC 2529127 30 100.0 38 .............................. GCACGTCAACAACTGTCAGATACAGGATTAGTCCCGGC 2529059 30 100.0 37 .............................. TCATGATGGTCTCCATCGCAAGCATCAAAAATTGTGT 2528992 30 100.0 36 .............................. AGGCATACATCGCTTCTGAAATTGGCCGTCAAATGG 2528926 30 100.0 37 .............................. AGCGCACTGGCCACAGTATCAGCTACCAGTGCCATAT 2528859 30 100.0 38 .............................. TGACATCGAAGAGAAATTTGGCAAGGGTGTGGCCGCGA 2528791 30 100.0 36 .............................. TCCTCCGCTTTCGCCCTGTCTCCGTCTACGTTCTCG 2528725 30 100.0 37 .............................. CTCATTTGGGCATCGAAATCAGCGGCTGTTTTCACAG 2528658 30 100.0 38 .............................. GACGCCCGTGAGCGAAAATGAGCCCAGCCACAAACAGA 2528590 30 100.0 36 .............................. GACGCCCGTGAGCGAAAATGAGCCCAGCCACAAACA 2528524 30 100.0 37 .............................. AAGGGCGTAAAAACCCTAACTCCGGTAGGCTTCACGT 2528457 30 100.0 37 .............................. TCACCTTCGCAGATCCCTCCTTCCCGAAAAAACCTTT 2528390 30 100.0 38 .............................. ACAATTCGAAGCAGCAGGTACGGGCTAAGGTGACGGAG 2528322 30 100.0 35 .............................. AAAAAGTTGATCCTGGAAGATACAAGGTCTCTTCA 2528257 30 100.0 38 .............................. TTTTCTACCTAAAAGCCAAATCATCGTTGAATCTGAAA 2528189 30 100.0 37 .............................. ATTTTGGTACACGCAGAATTGTTTCTGTATCACCCTT 2528122 30 100.0 36 .............................. CTTTCAAGAGCATGTCAAACAAAGTTGATCTTCTCC 2528056 30 100.0 38 .............................. CTGCTGTGTGGCGTAAATCATGCAAACGCACATTTTTA 2527988 30 100.0 37 .............................. GAGATGCAGGAAACCAACTAAAATTACCGCCAGACAT 2527921 30 100.0 37 .............................. ACTCTGGACTATCGGGTCGAGAAGTTCGTAGTCCTCG 2527854 30 100.0 38 .............................. AGGTCATCCACGTCGGCGGCAGCAACCTCGGCAGCTCC 2527786 30 100.0 38 .............................. TCGTTTTCGTGTCGAACATTATCATATCTTTTAATTTC 2527718 30 100.0 38 .............................. TAAACCATAGACAAACATGCTTCGAAGCCCTCAGCTTC 2527650 30 100.0 38 .............................. CCTGGCGGAATACCTCCGAAACCCTATCCCGTAGCTTT 2527582 30 100.0 37 .............................. ACCTTCTCGGCACCGTTGGTCTCCATCCACTGAACCA 2527515 30 100.0 38 .............................. GACCATGAACTCTCTCACTGCTGCCGCGGTGATGATGA 2527447 30 100.0 37 .............................. GACGATTTCCATAGAAACCACGTGACTAGTCCTCCGA 2527380 30 100.0 37 .............................. AGAAAAAGGGAGAATGGGATTATAAACCGTTCTTTTC 2527313 30 100.0 37 .............................. TTTCAAGCAATTCAATAGCATAAGGGTTGATATAATC 2527246 30 100.0 38 .............................. CAATTTCTTTTTTGATCTTGCGGACTTCGGCTTCTAAA 2527178 30 100.0 35 .............................. CTTTTTCCATGAATTTATTTTTAACCTCGATCCCG 2527113 30 100.0 38 .............................. CCCGTAAGCTCATAAACCGTAAAGCGTAAGCCGTGATC 2527045 30 100.0 36 .............................. ACAAATAAGCCCGTAAATCCGTCTCTAGGCTCATAG 2526979 30 100.0 38 .............................. ACAAGTGTGGATCAGACTGGGAAGAGTTAGCAATTTGC 2526911 30 100.0 38 .............................. CCGTCCGCAACGGCCAAGCCGCGGTATACGACCTTTCC 2526843 30 100.0 37 .............................. AAATCACTCACCAACTCAGCCACCAGCGTTCTTATCC 2526776 30 100.0 35 .............................. GGTTGCGCACCGCGCAACGGCAGCGGTAGCCGTTC 2526711 30 100.0 38 .............................. ATGGCGGTGCGACGTGGATAAAGACCTACAAGGATCCC 2526643 30 100.0 38 .............................. ATGGCGGTGGGACGTGGATAAAGACCTACAAGGAGCCC 2526575 30 100.0 36 .............................. TCGTCCAATCACAGGGGGTGAAATAGATGCTATGGA 2526509 30 100.0 37 .............................. AGAAAAAGAGAATGAGATACTATGACGAAGAAGAGGC 2526442 30 100.0 38 .............................. CTGATTTCGGCTAGCAAGCTGATGCGGAAACTGACCAA 2526374 30 100.0 37 .............................. AAGTGATTCCAGTGAAATCAATTCCCATCCTTTTTTC 2526307 30 100.0 37 .............................. TCTTAGCTCTAAAGTAGAAAGTAGGAGGTATGTCCTG 2526240 30 90.0 37 ..C....T.........A............ CAGGATGGTTATCGGGAAGAGAAAGAAGCAGATGAGA 2526173 30 90.0 37 ..C....T.........A............ TCGCAATAATATCCATATTCATTTTACTGGAAGCAGA 2526106 30 90.0 37 ..C....T.........A............ AATAAATAATCAAGCGTGCAGTCTGGAAAAAATGTAG 2526039 30 90.0 38 ..C....T.........A............ AGATCTCATCCATTGTTACCCCTCCATTTCTTCGTTAA 2525971 30 93.3 37 ..C....T...................... ATGTAATGGTCGAGCTGGCTCAAGTAGATGTTTGCAA 2525904 30 90.0 0 ..C....T.................A.... | ========== ====== ====== ====== ============================== ====================================== ================== 54 30 99.0 37 GTTCTTAGCCTACCTATGAGGAATTGAAAC # Left flank : GACTTTTGCAACAATTTATCGTTCCTGTTCAAGCGAAGGCCGCCCTTTCCATCGTGGCCAATTGGGACGACTCCCATGAGATCAAAAGAATCTCTTCTTTAAAGCAATATACTGACGAAAATGGGCTTGCTCTGCTCATTGGTCATGAGGAAGGGGGAGAACTATGGTAAAGGTGGAGACTTATTATCGAATTGGACAAAAAATAGATGATCACCCTAAAACATCACAGCATTGGGAGAGTCTCAGGATATTCGGAACGATAAATGATTGGCTTGGAGAAAGGGGGGGTTGAACAGATTATCGAGCAAAACTGTCGTCGATCGGAAGTAGTGCTAAAATCATAGGGGATCGACGACAACCTTTTTTCCAAAAAAACTAAGGGAAATGTAACGTAAACTATGCTAAACGCCCGTTTTAGATAAAAAATGATTTCCAAAAAACTTTGCGTTAAGTATAATGGGAGATGAGGAAAAAACTTGATTTTGTAGCCTCAAAATGGG # Right flank : ACGTGGTGAAATGGCTGGTAGAAGTAACATTATCACCGAGGCGGTCAAAAAGAGCATCGTCGAGAGGATCGCTGCAAAATATCGCGGGGGAGAGAAAAGAAAAACCCCTCTCCGATCGGAACATCGCCGAGCTTCTCCAATCGGAAGGGGTGAGGATCTCATGCAGGACGGTAGCAAAATAACGGGAGGAGATGGGCATCTCTGCGGCAGCTCGGAGGGAAAAGGGAGGGGACTGATCCCCTGTGGAAAAGATACATAATTTTTTCAACTGCACCCTCATGGACTCGATACACTTCATTACACAAGGTGTCGATATCCGCTTTATGATGGGAGGTAATGAGCACGGTGGCTCCACGTTCATGTTCTTCCCTCACGATATGATACAGTTGATCGACAGATTTTTCGTCCAGCCCATTCGTTGCCTCATCGAACAGAATCAAGTCCGGTTCTTCCATAATGGCCTGTGCGATGGCCAGTTTTTGTTTCATTCCCTGTGAATA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //