Array 1 133951-135052 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEIK01000007.1 Clostridium combesii strain DSM 20696 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================================================================================================================== ================== 133951 30 100.0 34 .............................. GAATATTGTATAAGAAATGAATGGGATCAATGCA 134015 30 100.0 39 .............................. TATTCTATATAGTGTATTTCTTTCTTTTGTTTTCCAAAT 134084 30 100.0 37 .............................. CTTATTGTACTAGCGATATTACCAACAATATCGCTAA 134151 30 96.7 36 ...............A.............. CCATTTAAAACACCATGAAGTTTAAGATGTGATCCT 134217 30 100.0 35 .............................. AATGTTAATCTTGCAGCTTCCTCATAAGCATGGTC 134282 30 100.0 34 .............................. ACCTTAGATGAATTCCATTTATCTTTATTATTTT 134346 30 100.0 37 .............................. TCAGTTACACCATCTAAACAAAACCCATCAGCTTTAT 134413 30 100.0 34 .............................. TAATGCTTAAATTGCAATTTGAAATTATTGTTAA 134477 30 100.0 36 .............................. GAGAGCGGTGAAGCTATGAAAAGCCTTTTTAATTTA 134543 30 100.0 36 .............................. TATCCATATGGTGCATTAGTTGCAATGTAATTGCCA 134609 30 100.0 37 .............................. ATTAAGGCCAGTGCTAGATAAACTGGTTCCCATAATG 134676 30 93.3 37 G.......G..................... CACAAAAATATTTGACATTCACCGGAAAAGGTGATAT 134743 30 86.7 21 G..A..T......................G ATCATAACGTTTATTATTAAG Deletion [134794] 134794 30 83.3 197 .......C.......A.......AA..T.. TTTAAAAGTGACGGCTTTTTAGTAGTATTTGTACAAATAACAGAATAGTATATTAATTTAGTTTTATATTGTTATTACTAGAAAAAGATAGTTTAAATTCCACAAAAATTTAAACTATCTTTTATTTATGTTTAAAAATAAAAGCCAAATTTTAAATTAAAATTGTATTAGCAAGTTAGTTGAATATTCAAGTATTT C [134821] 135022 30 73.3 0 TG.A..T..........T.AA......C.. | T [135031] ========== ====== ====== ====== ============================== ===================================================================================================================================================================================================== ================== 15 30 95.6 46 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCTTATATTCATGTATTTACTTTGTTTTTTGTAGTAAACATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGCGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAAATTATTTATATGGTAATATGTATTTATAGATATAAGTCAATCATAACGTTAATTAGGGGGTGGATAAGCTTGGGAGAAATAATTCTTAAATTCATTGAAAATAATAAACTTATGCTACTTACAGTGATGTTATTAATTTTTTCTATTTTTAATAGAAAAAAAGATATAACTTTAGTAAAAGAAGATAAAAAAGGATCTTTTCGTTTAGTTATATCTAATAACGAAAACATATAAAAGAACCTACTTTTATATGTTTCGAAAATAGTTTATATAAGGTGAAAGTGATATCTGAGTTAAATTCACCTTATATATTTTTATTATAACAAAATTATATACAACAAACTATATAAAAACGATATTTAATGGGAAAAATGAAGAGGATGGAGGTGAAATAATGAAAGTATATGAATTAACACTAAAAATATTTCTCCTTAAAGATTTAACAGTGGACAAGTCCTATGAAAAATTAACAGAATTAATTGACAAATCTCTATGT # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 144741-145033 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEIK01000007.1 Clostridium combesii strain DSM 20696 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 144741 31 100.0 33 ............................... TTTTTTTATTTAAAAATCCTTTTATTTTACTGG 144805 31 100.0 35 ............................... TAACCATTGTTGTTTGGCCTACCGCTGTTGCTCTA 144871 31 100.0 35 ............................... AGTTTCCTGTGTTAAATGCCATCTTTAGAATGCCT 144937 31 93.5 35 ........A.....................C TTGCTCCCCATTGTTGTTCTGAATATCTTTCCCAA 145003 31 80.6 0 A.....C.T...................GCA | ========== ====== ====== ====== =============================== =================================== ================== 5 31 94.8 35 GTTGAATAGTAACATGAGATGTATTTAAATT # Left flank : TAAAGGAGAAGATGTAGATGGGAAAAGGATTTAATTATAATTATGCTTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGCTAATGAATAATAATGTATACGGAGAAGAAATATTAGGGAATAAAGCAATGACAACAGGAGAAGATTTAATATTATAAAAAAATGGAATCAATTTTTCCAACCAATTTTAATTTTAAAACCTATCTTAGGCATTAAAATATAAGGCTTAAGATAGGTTTTTATTATGACTTTATGAAAAGTGGGAATTGCCTGGAAAATTTTCTGTAAAAGCTTGTAAAATCAATACTTCTATGGTATTCTTGGTTTTAAGGAATGGCTATTTCCCTATG # Right flank : AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTATAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATAAAAAATGCATTAGATATTAAGACAGTTGGCATGAGTTGAACAGTAACATAAGATGTATTTAAATTCTTCTTCCTCATGTGATTGTTCAACTTCTTTCCATCGTTGAACAGTAACATAAGATGTATTTAAATAAATTAAGGAAGGATATTCCGGATTTTTATAGAAAAGTTGAACAGTAACATAAGATGTATTTAAATCACTTATTGCAATGTCTTA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 145286-146033 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEIK01000007.1 Clostridium combesii strain DSM 20696 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 145286 30 100.0 35 .............................. AAAAAATGCATTAGATATTAAGACAGTTGGCATGA 145351 30 100.0 37 .............................. TCTTCTTCCTCATGTGATTGTTCAACTTCTTTCCATC 145418 30 100.0 36 .............................. AAATTAAGGAAGGATATTCCGGATTTTTATAGAAAA 145484 30 100.0 34 .............................. CACTTATTGCAATGTCTTAATCTAAGACTATATC 145548 30 100.0 34 .............................. GGGAGCGTTACCAACAGTATTAAACCTAGCGGCA 145612 30 100.0 35 .............................. TATCTCCCTCCTTTCAATATAAAATTTTAAAATTG 145677 30 100.0 36 .............................. CCGAAAACCATGCTGCGATTACTCGCCACCATCTAA 145743 30 100.0 34 .............................. AGAATTCTATCAGGCATATCTTCACCTGTAATTT 145807 30 100.0 35 .............................. GCTTTCCAGCTTGAATTTCTTGATTAGTACTTGCA 145872 30 100.0 37 .............................. AACAAAAAAATTAAAGGGCACATTTGCACCTCTAAGA 145939 30 100.0 35 .............................. AGAATTTACTTGTGAATTACCGGTGGATGGTAAAA 146004 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.4 35 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : AATCCTTTTATTTTACTGGGTTGAATAGTAACATGAGATGTATTTAAATTTAACCATTGTTGTTTGGCCTACCGCTGTTGCTCTAGTTGAATAGTAACATGAGATGTATTTAAATTAGTTTCCTGTGTTAAATGCCATCTTTAGAATGCCTGTTGAATAATAACATGAGATGTATTTAAATCTTGCTCCCCATTGTTGTTCTGAATATCTTTCCCAAATTGAACATTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTATAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAACCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCCTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGAATTGTGATAATTTCTATGCAAATTATTAAATTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //