Array 1 138938-137261 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCHX01000004.1 Klebsiella variicola strain K5-12018 NODE_4_length_209450_cov_9.5755_ID_6470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138937 29 100.0 32 ............................. CCTCCGGGTGGGCCCGGCACCAGCGGTTAGCG 138876 29 100.0 32 ............................. GATGGCGTGCAGATCCTGCCTTTCAGCCAGAT 138815 29 96.6 33 ............................T GCATTTATGGGCGTCCTGTCTCCAAAGGCGGCG 138753 29 100.0 32 ............................. CAATATCATTGTAGCCACTGCAGACGCCGTCG 138692 29 100.0 32 ............................. TGAGCATACGAGATGCCTCTGGGAAAAGTAAG 138631 29 100.0 32 ............................. ATGCTGAAGGTCGATACAGCCTCAACGATCTG 138570 29 100.0 32 ............................. ACTGATATCACCGAACTCCCGCCAAACATTGG 138509 29 100.0 32 ............................. TGACGAACGATTTCATCGTGGATGATCATCAT 138448 29 100.0 32 ............................. CCTCTGAGGACGGAAAATTGATTACCGTTACC 138387 29 100.0 32 ............................. GGATGAATATCAGGAGCGTGCAGCATGACTGA 138326 29 100.0 32 ............................. GAGCAAATGAAGATGCTCGACACGCTGCAGAA 138265 29 100.0 32 ............................. GCCGAGCGCCGCTTTCGTGCGCGCCGGTGTGA 138204 29 100.0 32 ............................. TGAGGGCCGTCTTTAAAGTTCTGCCAGTCACC 138143 29 100.0 32 ............................. GCCTCACGGATAATCTGGGCCCAGATACCCTG 138082 29 100.0 32 ............................. TCAAATGTATTCTTTGAGCCAGCCAGCGCCGA 138021 29 100.0 32 ............................. ACGGCGTGGATTTTGAGCAGGTGGCAATTGCA 137960 29 100.0 32 ............................. TTAACCTTTTGTTGAAACAGCAAAAGGATATA 137899 29 100.0 32 ............................. GTGCGTGGGTTTATTGCGGGTTACACATTCTC 137838 29 100.0 32 ............................. GAAATATCCGGCAGCGACGTGATCGCGGTATT 137777 29 100.0 32 ............................. ATGTCCCGGCTGTCCTGGGTAGGCGTTAGCAG 137716 29 100.0 32 ............................. TCGGCCATGACGGCCTCCTGAGACTGCGGCAC 137655 29 100.0 32 ............................. GTCGATTACGTCGATTCCTGCGGAGTACCGGG 137594 29 93.1 32 A....................G....... AACCTCGAAATGGGGCTCGACTGGAAAACGAT 137533 29 100.0 32 ............................. GATGACGCCACCGGGTGTCTTATCAGTGGAGC 137472 29 93.1 32 ............G.T.............. ACTGATATCACCGAACTGGCGCAGAGCCTGGA 137411 29 96.6 32 ............G................ CACGCGCCGACGATCTGACGCGAAATAACTGA 137350 29 93.1 32 ............T.............T.. CACATCGACCCGAACGGGAAAGTCGATAAAAT 137289 29 89.7 0 .............T...........T..C | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAGCCGCCTCAGCCGGCGCCGGATATGCTGCCGCCTGCGATACCTGAACCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCTATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGCGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGATAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACGAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAGATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GCAACTAACTTTATCGAGCCTGAGGGTGGGTACGAAAGCTTGCGGAAAATAAGTATCGCTACCTGCCGCTCTTTAGCGGAATGACCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTTCTGAAGCGCGCTGAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGAGAACGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGGATCCCGCCCCCATACCCATCCTGTTGCGTTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACCGTCCTGCTTTGGCTGGGATCGCTGAACGCGTTGCCGTTCGCCATCGCTTATCCATGATATCGTCGCCGAATTACCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCCCCATACAGCGCAAAATCGGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10017-10889 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCHX01000082.1 Klebsiella variicola strain K5-12018 NODE_82_length_17915_cov_14.4503_ID_9126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10017 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 10078 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 10139 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 10200 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 10261 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [10315] 10315 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 10376 29 100.0 32 ............................. CCGAGATTGATTAAAGCAAAGTAACGGCGGTG 10437 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 10498 28 89.7 32 ..........-.CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 10558 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 10619 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 10680 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 10740 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 10801 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 10862 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 93.8 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //