Array 1 1478239-1476835 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDVW01000001.1 Enterobacter sp. ku-bf2 scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1478238 28 100.0 32 ............................ GTCTGCAATTCCATCCATCCCCAACAAGTCGC 1478178 28 100.0 32 ............................ GACACAGGCCGACGTCGATGCGATGTTTAACT 1478118 28 100.0 32 ............................ CTGCAAAAACTTACAGGTTTTTGAAAAAATAA 1478058 28 100.0 32 ............................ AGTCCGTCGCGGTAGTTCTGGTGAGTGACTGC 1477998 28 100.0 32 ............................ GACAGTGCGAACGCCGAACAGGCAGCGAAAGA 1477938 28 100.0 32 ............................ ACAACCAGGCGGCCGGCTGGCTTGCGGCTTTT 1477878 28 100.0 32 ............................ GTACCATCGATACCGAAGTTATCCGCCTCATC 1477818 28 100.0 32 ............................ AGCAAGGAGGACTACATTGATAAGCTGAAAGT 1477758 28 100.0 32 ............................ TGCAGCTGCGACCAGCGAGGTTGAAATTCAAC 1477698 28 100.0 32 ............................ CGCGCCGAAGATAAACGCCACGGCCCCCGAAG 1477638 28 100.0 32 ............................ TGGACGCGTCGAATATCAGAGAACGGCAGGAC 1477578 28 100.0 32 ............................ TACCCGCTGGATCACCGTCTGATATGTTCACT 1477518 28 100.0 32 ............................ GGAGTGCGCTGACGCTGACACGTCGTTTGAAG 1477458 28 100.0 32 ............................ ATCGTGGCGAAAAAGACAAAAAGGGAAATGAT 1477398 28 100.0 32 ............................ AGTAACGAGGCAGAACCTAACCAACCCGCACC 1477338 28 100.0 32 ............................ AAGCTGACCAGTACGAAACGAACCTTCAGCAT 1477278 28 100.0 32 ............................ GGATACGAGCAACTTGCCGCGCAGATTCAGGG 1477218 28 96.4 32 .G.......................... TACGGGCCGCACATTTCGAATTTGAGCACATC 1477158 28 100.0 32 ............................ GGATGAGGCCCAGCCGGTTTAACAAATGGAGG 1477098 28 100.0 32 ............................ GGTGGTCGTAACCAGCAAGTACGACCGACAAC 1477038 28 100.0 32 ............................ TAGCACATCTGTTCGTATTCGGTAACCCGCCC 1476978 28 92.9 32 ................A...A....... GGCAACAGCCAGCTCACGCGTAGGGAAAGAAG 1476918 28 92.9 27 ...............C....T....... ATAGAAAATAAGGTCTCCCTTTACTCT C [1476893] 1476862 28 67.9 0 C.A.....T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================ ================== 24 28 97.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCAGGTAAACCGGCGTAACGCCAAAGCGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTAATGTCATTTGTCATAGACAAGTATAGTCATTTGTCAGAGGGAGTGGAATGGGCGTTTTTTGTGCGGGTGGTTAATGCGAAGAAAAGTGTTTTGACCCTAATTTTTAGCGGTTGTGCAATGGATTGATTTTAAATGATTATTTTTGGTGAGTGAAAAAGAGGGTGAGAGAAGGGTTTTTAGCTTTTTTTGTATGAAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCACCACAAAAAAATAAAGCCGGGGAAAACCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1488848-1487735 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDVW01000001.1 Enterobacter sp. ku-bf2 scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1488847 28 100.0 32 ............................ GAACGGCCGCCGACCATGCTGACCGGCTGGCC 1488787 28 100.0 32 ............................ TGGGTGCAGCCGCCGAAACCAGCGTATCAAGC 1488727 28 100.0 33 ............................ GGTGCCGCTACGTTCGCGAGCTCTGTTGCGCTG 1488666 28 100.0 32 ............................ TTAAACCCTGATGCGCTTGCCACCGGCCAACT 1488606 28 100.0 33 ............................ CCGCCGCATCCGGCTGTCTTCGTTTTGGGTTAA 1488545 28 100.0 33 ............................ TTAACAGGTTTCGACCTAGCCCCGACTAATCAT 1488484 28 100.0 32 ............................ GTAGCCACGGAGCGACGGAGCTGGAGCGTAAT 1488424 28 100.0 32 ............................ TTGTAGCCCATCTTGCGCTTAATCTGATCGCT 1488364 28 100.0 33 ............................ CTGATGCTGCCTCGAATAAAGCGGCATCATTAT 1488303 28 100.0 32 ............................ ACTGTAGCCAGCCGGATTGATGTTCACCGCCG 1488243 28 100.0 32 ............................ CTGGGATGATGAAAACGCCGCGGACGCTATCG 1488183 28 100.0 33 ............................ TGAAACAGCGTGAATATGCCCTCGTCCTCATAC 1488122 28 100.0 32 ............................ ATTAAATTTGGGTCGGTATGTTCTGGCATTGA 1488062 28 100.0 32 ............................ AGGCAGGTCACCGGCATGCGACAGAACAGCTT 1488002 28 100.0 32 ............................ CAATTCACTTTGAATCAACAATGTTTCATTTT 1487942 28 100.0 32 ............................ GCACTCCACCAACCGCCGGAACTCCGGCAGCG 1487882 28 100.0 32 ............................ GATTGTCATTATGTCCGAATCCGAGGATGTAC 1487822 28 100.0 32 ............................ TTCACCCAAAGGCAACCAACACACAGGACGCT 1487762 28 78.6 0 ...........C.........AC.ACC. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACTCCCCCAAACGCAGCCCGTTTGCCGTTGCCTCGGAGCTTACCTGGAAGAGGTGAAATCCGGCCTCACAGAATCCATGCGTGATTTTCAGGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACCGAAACGAAATGTGACTACAGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGCGATATGTTGCCGCACCTCACGGGGCTTCTTCATGACATTGCGCATTCGATGGTCGCAGATGTCGTTGCGCCTCAAAGTGCAGAAACGGTAATTCACATTATTTCCTGAGTGCTATCCGAGGCGTCGGGAGGGCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGTTTACGTAACATATTGATTTATATGGTAATAATTTACGTCCAAGAAAAAGGGTTTTATGCGTAAAAGTTGATTATTTTGTTTGCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : AAAACAACTCTCTAAAACATTCAGCTTACCTATTTAAAACTTAATACTATCAAACCCACATTCTTTATTTTTCACAATGAATAAAAAATTCATTCACGCACTAATTATATTCTAGCCAATATATTATCTGTAAAAATAATGCATTAAATTGAATGGTGATCTTCAGTTTTATTATCACGATAATTACTATTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTCCGATAACATACCCGCATTCAACACCTTGAAATAAAAGCCGTTGCTATGCCTGCAAACAGCATTACCCCAACAGATTTAAAAACTATCCTGCATTCGAAACGCGCCAACATTTATTATCTGGAGAAATGTCGCATCCAGGTAAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGCAGGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //