Array 1 146445-146292 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJK01000006.1 Lactiplantibacillus plantarum strain L10 FJGKDHAO_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146444 29 100.0 33 ............................. GACTGACATTGCGAAGTTGAGTGATCGCGATGG 146382 29 96.6 33 ............................A CGTGAATTTTGCCATTACATTTCATCCTCTCCA 146320 29 82.8 0 ........................TGATC | ========== ====== ====== ====== ============================= ================================= ================== 3 29 93.1 34 GTGTTCCCCATGTATGCGGGGGTGATCCT # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCCGGGCTGGCTTTGAGTTGGTTGATCATCGTGAGACAACATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCCATGCTTCACCGAGCTAAAGGGCACGGCGTTCGCTTAAGTCGTGTGACATTTGAAGGACTCCTATGTGTCAAAGACCTACCAACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTGATGACGGTCATTCCTGAAGTACAGTGATTGACTTACATCGGTGTTTACTGGATTGGTGAGCCTGGAACCAATGCTGACGAACCAGGGATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGCTATCCTCGAAGTCAAGTTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGCGGCGGGATTTGTCAAGT # Right flank : CTTGGCTTGAATGCAGCAGTGACCCGCACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGGATTAGCGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTGAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACACCGGCGAACATCTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAAGTGACGAGCGAAATCAGGAAGATCAGTGTTGAGACGAAGAAGAATAGGGACCAGATGATGCTCAGTGTTTGATCAGTGATAAAAGCCCATTGTTTCAAATACTTGCCTGGATGAGTGGCAACCCGTTTAAAGTTGG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154747-155325 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJK01000006.1 Lactiplantibacillus plantarum strain L10 FJGKDHAO_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 154747 29 100.0 32 ............................. CAACCGCCATTATCCAACCAATTCGCTAGCTG 154808 29 100.0 32 ............................. AACATCAACATCGAAAGCCCATTGGGACTTGG 154869 29 96.6 32 ............................T ATTTTGAAATCAATGTAGGCGGTCATTATGCC 154930 29 96.6 32 ............................T TGCGAAACAGCTAGTGCAGTTATTGCCGGGTA 154991 29 100.0 32 ............................. AGTGCGTCAAGGTACTGCTTGAACGTATGCGA 155052 29 96.6 32 ............................T ACCAGCGACCGCCCTCATAATCATTCTTAAAT 155113 29 100.0 33 ............................. GGACAATCGAGCCAGTAACCTGTATTGGGCTGA 155175 29 100.0 32 ............................. ACGATCGACACTTCTAAGTATCCGAATGGTGG 155236 29 89.7 32 ................T.......C...T TCTAAACCCGTCGATTTCGACTGGTTTAAAAA 155297 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : TACTGGTAGTTATATACGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAACTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTTATGTGAGCAAGAATCGTTGAAACAATAAATAATCTGCGCTACGGATGAGATATGCCTGCTGCAAGCCTAGTACTTGGGCCCACCGCATAGTTATTAATCATAAATTTATCTCTTAGCATTTTGTATCACATAATTTATGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCTATACATTGAAGGCCGCCTTGCTTGTTTCGTCATATTAATAGTGTTCATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTACTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATAGATAAAGCAACAAATCACTTTGAAACAAATACGACTTTACAGATATAGACGTGCACACTTTACACATCAGCACGCTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATGTGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCCTTCTATGTCATTTTCTATAAATGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTGTTACCAATAAAGGCCTTCATTTCACTCAACGCCATAGCTATCGAAACACCTTGCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 159811-160514 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJK01000006.1 Lactiplantibacillus plantarum strain L10 FJGKDHAO_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 159811 28 100.0 33 ............................ TACGCTGTATTAGCCCCATTTAATCACCTACCA 159872 28 100.0 34 ............................ TCACAACTTTGCTCATATTCGTGGCACCCGACTA 159934 28 100.0 37 ............................ TAAACGATGACTTAGTTACTTATATCACGGACTGGAA 159999 28 100.0 33 ............................ TATGGTATTTTTCTCTCATCTCATCGCTTCCAT 160060 28 100.0 33 ............................ CCTAACGTGTGCTTGTGGCGGAATAGGTAGACG 160121 28 100.0 33 ............................ CTGTGGGAATCTTACCGACAGGGAAATGCAATT 160182 28 100.0 33 ............................ CGATAGTAATTGGTCCTCCGATATTGGTATGGG 160243 28 100.0 33 ............................ TAGTTTCCAGATTACCAACAGTTTTTTGTACGT 160304 28 100.0 33 ............................ TCGTGCCATCATCTGCAACGGTTGCCTTGGTGT 160365 28 100.0 33 ............................ TTTGGATATCAACCAGCTTGTTAGTTCAGCTTA 160426 28 100.0 33 ............................ CGTGTCATTGTAGATAGGTGCTTCTGGCTCAAC 160487 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ===================================== ================== 12 28 99.4 34 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : AAAACCGGCGCCCAATCGATCTTAAAAAACTAACCAAGAAACGCGGAATATTTGCTTGGAAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACAATATCTTAGAAACCATTGCGGGTTTGCTTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAGATTGTGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGCAAGGTAGTTATTGAAGGATGGAAATGAGTTGGCGTGTATTACGGCTCGCGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTATTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAAGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGACTCGCCCATTTTAGCATCATTCCCCGCTAAAACTGCCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTGAAATTGGCATTTAAAACACCACTGGCTGATCAAATGCGCCCGCAATCACTGGAACAGATGGTCGGGCAACAGGATCTGTTGAAGGCAGGCCAGCCATTACGCCAGATTATTGATCAACATGTTAATATTCCCCTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGTCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTAAAACATTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //