Array 1 11757-7882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQN01000156.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold39_1_size27980-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11756 37 100.0 39 ..................................... AACGTGATAACATTATCAAAGATGATCTGTCAAGCCAGA 11680 37 100.0 34 ..................................... CAGGGATGATTTCACACAATACCCATATCATGAA 11609 37 100.0 38 ..................................... ATAGATGTGGCCAGTGCAGGCCAGATAATTTATTTAGA 11534 37 100.0 35 ..................................... TTGTAAATTCTGGGCATGTCATCCTATAGCGGAAA 11462 37 100.0 35 ..................................... TGAAGTTGGATTAAGACTCCATTACAAGCCTCTAA 11390 37 100.0 35 ..................................... AAAGTATAAGCTGTTCTGTGGAGGAACCGAAAAAA 11318 37 100.0 35 ..................................... TCTGTTTTATCAAGCTGCACCCCAGGTCCTGCACT 11246 37 100.0 37 ..................................... CAAGTGGTCCTTTGTTTAAGATCGCTGCCTGTTCAAA 11172 37 100.0 34 ..................................... TAAAGAGTGGTTAAAGGACGAATCCAAAAAATCA 11101 37 100.0 35 ..................................... TCCGTCGACTCCGTAGTCTCTCAAGCCGTAATACG 11029 37 100.0 35 ..................................... AGTTTATATACTCAACAAGGTTAATATACTTAAAC 10957 37 100.0 34 ..................................... CCCTGTGGGATGCCTAATTTATCTACCCAATCGC 10886 37 100.0 35 ..................................... AGAGTAGCAAGCCACGAACCAGACGTAATAAGAGC 10814 37 100.0 35 ..................................... AAAATATTAAAAACCGTGTAGGGTGGATGCATGTA 10742 37 100.0 35 ..................................... AGAGGTAATACTCAATTTTTCCCAATGACTTTACA 10670 37 100.0 34 ..................................... AGGAATAACAATGTTTAACCTCAAAGACTTTAAG 10599 37 100.0 36 ..................................... AAATTGTATTCTTCTGGAATCTCAAGCCCGTATTTA 10526 37 100.0 36 ..................................... AGGTCCCCGCGTGCGAGCAGGCGACCCACATACTCC 10453 37 100.0 36 ..................................... CAATGTCGTCGTCAAAAATCCTGTTCTCATTTTCTG 10380 37 100.0 35 ..................................... TTAGGCTTTCTCATCAGTCTTTTGAACTTGATGAG 10308 37 100.0 36 ..................................... ATGAAATGACTATGGATACCTCAGTCGATGGATACC 10235 37 100.0 35 ..................................... TTTCAGATAATGAATATGAATTAGAAACATGCAAA 10163 37 100.0 36 ..................................... AAAATATTAAAAACCGTGTAGGGTGGATGCATGTAA 10090 37 100.0 36 ..................................... CAGGGAATGCGGAATTGATGAAGTGAAGGTAAAACA 10017 37 100.0 35 ..................................... ATCTGCTCGATAGTCGGATTAGTTGCGAGATATTT 9945 37 100.0 35 ..................................... TTATGCTCCTGAAAGGATGGTGAACATATGGAAGA 9873 37 100.0 35 ..................................... AAAATCAGATCCCGACTTTACAAGAGCTATTCGGA 9801 37 100.0 36 ..................................... ATCTTCTTCTTTCAGGATGTTGTCTAATATCATGGA 9728 37 100.0 37 ..................................... TTAAGGCTTCTGGGAAGGATAGTTCTGCTTACATAAG 9654 37 100.0 35 ..................................... TTTCTATACTTCAAATAATCACTTCCAAATAATCA 9582 37 100.0 35 ..................................... TTTTGGATGTTATCAAAAACAATTTCATACTTTTT 9510 37 100.0 35 ..................................... TCTGATCTGTCATGTTTATACCCCGATTCTAAGTA 9438 37 100.0 36 ..................................... ATAAAACAGACAAAGGCATGGAAATGAATGTCGAGG 9365 37 100.0 35 ..................................... AAAGATATTTTTACCATCGTAGCTCATGACGTGAA 9293 37 100.0 35 ..................................... AGTATTGCAAGTGCGTTCTTATATTCCGCTACAAG 9221 37 100.0 33 ..................................... AAAAGATTGCCTTTAGCTGCAGAGGGTCTTTGC 9151 37 100.0 34 ..................................... ACAATAATTTAAATGAAAATCATAAGATGATCTC 9080 37 100.0 32 ..................................... TCTCTTCTTATACTTGGAAGCGTTTATTCTGC 9011 37 100.0 37 ..................................... AAGGAGTATATCATAGGTAAGTTTAATTTTATCGCAA 8937 37 100.0 36 ..................................... ATGGAACCAGAAGCAGCTATACTAAAATTTCAAGCT 8864 37 100.0 36 ..................................... TTAAGGTCGTAGGCATAAGCGACTGATGTATATAAG 8791 37 97.3 34 ..................T.................. TTTGGATTGGCTTAATTCCCTTCTCTGCATGAAG 8720 37 97.3 35 ..................T.................. TAATAAAATTTGGGTATTGAAACCATTACATTACC 8648 37 97.3 37 ..................T.................. TTTTCTAAAACTGTCCCGATGAAAGTATAATCATCAA 8574 37 97.3 35 ..................T.................. ATTCTTCGGACTCACCGGTTAATTCCGGAAACACA 8502 37 97.3 36 ..................T.................. TCTGAGCAATAATAGGCGTCATTGAAGCCCACATGC 8429 37 97.3 35 ..................T.................. TAAATGTGGTCAGATGAAACACATAGCAGGAGTTG 8357 37 97.3 36 ..................T.................. CCCGTCTGGTAACTATGAAGAGTACGACGGTACTTT 8284 37 97.3 38 ..................T.................. CACACTCTATTGAATTCTTCAGGGTTTTCCCACATTTT 8209 37 97.3 37 ..................T.................. TACACCCGCATCCATTGTTTGAGCACATTTCAGTTAG 8135 37 97.3 34 ..................T.................. CTGAAGGAGATTACATCCTGCAGTTTTATATTGA 8064 37 97.3 35 ..................T.................. ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 7992 37 97.3 37 ..................T.................. TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 7918 36 73.0 0 .....T.....T......T...G.GCCT-.......A | C [7886] ========== ====== ====== ====== ===================================== ======================================= ================== 54 37 98.9 35 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAAAGCGAAATATTCATTGCCTCTAAAAAATACCATATAAAAGGGATTGTGGACGAGGTTCTATTTCTGGAAGACGGAACCGCTGCCCCTCTTGAATATAAATTTGCCGAATACAAAGATAAGCTTTTTAAGACTTACAAGTTTCAAATGGTTTTGCAAGCACTTTTAATTAGAGAAAATTACAATATTGAAGTAAACCGTGCATATATTTGTTATACTCGAAGCAATAGTCTAGTCAAAGAGATTGAGATCAGCCTTTCTGATTTCAAAAAAGCAGAGAAAATAATCGAGGAAATTCTCGATATCGTTCAAAAAGGCTTATATCCCAAGACAGCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAACCCCAAAAAAGGGCTCATTTCAGGTCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 34949-39466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQN01000137.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold20_1_size51976-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 34949 37 100.0 37 ..................................... ATTGTGTTGGACGAGTCGGCGTTAGTCCTGAATATAT 35023 37 100.0 35 ..................................... TAGTCCCCTACCTGCTTATATGGCCATTTCTTCGG 35095 37 100.0 37 ..................................... TCCGTTCCTAATTCATTTTCTGACTTATCTATAATTC 35169 37 100.0 35 ..................................... TTAGATACGCCTCATTCAGGAACGGGTTAAGCTGG 35241 37 100.0 35 ..................................... GAACACCTTCTCGTTCTTTTTTGGCCTGATACTTT 35313 37 100.0 36 ..................................... ATAAGGCTTTGTTACCTGTACCTGTGACCTTATTAG 35386 37 100.0 35 ..................................... GTTTTCTCCGCGATACGGTCAATTAGGTCCATCTG 35458 37 100.0 35 ..................................... CTTCACGCTCCTATCACCTTGTCATTGTAGTAAAG 35530 37 100.0 37 ..................................... ATTACAAACTGTGTAACCGGAGGCTGTAAGATATTTG 35604 37 100.0 34 ..................................... AATGCGGTGATCGTGTAAGATTCAGAGGTCAGAA 35675 37 100.0 37 ..................................... AAGAAACAAAGATCCAGCTATCCAGAGCAACTTACGA 35749 37 100.0 37 ..................................... ATTCACGCAATCAAGGGGATTGCATTAGGCTTGTATA 35823 37 100.0 34 ..................................... ATGGGACAGGTTGGAGAAATTTTTGCACTTGCTG 35894 37 100.0 37 ..................................... CTGTTCAGTTCACTGACCTCTCCGAAAATGCTCTCTC 35968 37 100.0 34 ..................................... ATCTCGTCTGAAAGTTCATGAATCAACTCTAATT 36039 37 100.0 35 ..................................... CCAAGCCTGATTATGAGGTAAACTGGCATCACCGG 36111 37 100.0 38 ..................................... ATTCTGGAAAAGTTCTTCACTTTGTACCAATCTTTTTT 36186 37 100.0 36 ..................................... TTACCTCCCATTGATCGGCTTCGGGATCACTTTTTG 36259 37 100.0 38 ..................................... GACCCAAACAGGCTTACGATTGCTGAAAGTCCATTCGG 36334 37 100.0 40 ..................................... ACGAAAACACATCTCTAGGGTCACATATCTCCTGAAGTTT 36411 37 100.0 35 ..................................... AAGAATTAATGTCACACTTAAACGTAAGCAGGCAG 36483 37 100.0 35 ..................................... TCCTATCTGCAGGACCTTACATGAAGTATGTGTGG 36555 37 97.3 35 .....C............................... CCGGAACATGTATACACATGCCGGATGCACTTTCG 36627 37 97.3 39 .....C............................... ATATGCCCTCCTGCTGCCCTGCTCTTCCTGCCTCTGCTC 36703 37 97.3 36 .....C............................... CAAACACAACAACTGTAAAGTTGTTTGGTATCTTTG 36776 37 97.3 33 .....C............................... CCCCGTCGTCGTCCCAATCGCCCGAACTCCCAT 36846 37 97.3 37 .....C............................... CCCAGACGCTCATTAAAAGGGCTTCGCTAGATGAATC 36920 37 97.3 35 .....C............................... TTTTTGGGCTGTATTTTGAGAAGCTGTTAAGCCCT 36992 37 97.3 38 .....C............................... TAGCGGATATTCAGGGACATGTTAAAAAGCAGGTCGAG 37067 37 97.3 34 .....C............................... CAGTTATGCCACCGTCCGCAACACATTCAGATAC 37138 37 97.3 33 .....C............................... TCGACTGCGTCGGTTTGATCCGTTTTGAGAAAG 37208 37 97.3 38 .....C............................... GAAAGAGGCTCAAGATCGTAAACATCTTTTCTCCACTG 37283 37 97.3 34 .....C............................... AACTCTTCCGGGGTTGTTAAGGACATCTTAAACC 37354 37 97.3 37 .....C............................... ATTTTCCCTCTTTTCTTTTTCGCGTCTGTTTAAAAGT 37428 37 97.3 35 .....C............................... TCGTTATTTCATCGAATTTTTCATCCTGCATTAGT 37500 37 97.3 37 .....C............................... AATCCACATTCGTTAACAGTGTAAGCAAATTATATAA 37574 37 97.3 38 .....C............................... TAGAGCGCATCGAGACATCCACACTGTTTTCGCGACTC 37649 37 97.3 35 .....C............................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 37721 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 37794 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 37869 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 37943 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 38015 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 38087 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 38158 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 38230 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 38302 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 38372 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 38444 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 38518 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 38590 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 38662 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 38734 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 38807 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 38881 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 38956 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 39031 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 39102 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 39210 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [39215] 39283 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [39290] 39355 37 81.1 36 GG...A...T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [39360] 39429 37 78.4 0 TG...A...T.GCT......................G | A [39434] ========== ====== ====== ====== ===================================== ======================================================================= ================== 62 37 97.5 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1255-10958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQN01000148.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold63_1_size20235-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 1255 37 97.3 32 ..................T.................. AACCCGGCTCCGCGCATAATACAGAAAGGCTT 1324 37 97.3 35 ..................T.................. TTCAGTCCGGGGACACCTCAAAAACACTAATCTGT 1396 37 97.3 36 ..................T.................. CTTATTATGTTGATGAGTAGTACAATTATCGTACCG 1469 37 97.3 35 ..................T.................. GTTGTTGCCGATACCCGTGCTATATAATCCTCTGC 1541 37 97.3 37 ..................T.................. CAAACCTTTCTCCAATCGCCATATGAAGGCCAGTTTT 1615 37 97.3 37 ..................T.................. TCCATCCAGCCAAGCGGGCCGCCTCTCATTGCGTCTA 1689 37 97.3 35 ..................T.................. AATTATTATATTCGTCTTCTGATAGCGGCGGGATT 1761 37 97.3 35 ..................T.................. ATAAAGAACCACCTGTGTATAATACAACACAGCCG 1833 37 97.3 37 ..................T.................. TAATGGACTGCCCCGTCTTCATCGCATATAGCTACAC 1907 37 97.3 34 ..................T.................. CACCATCGCCTATTTTCATAATTCCAGTATCTGT 1978 37 97.3 36 ..................T.................. CAAAAATATCAACCGGTTACAATTTCCCATTAGAAA 2051 37 97.3 35 ..................T.................. CCACGTATTTTCCTCCTATGTTACTACAATATACT 2123 37 97.3 35 ..................T.................. TCAAGTACGAAAACATATACAGCGAGCTTATAACG 2195 37 97.3 35 ..................T.................. TCATGGTTTCGATGCACTTACTCCTAACTGCATAG 2267 37 97.3 35 ..................T.................. CAGACATCGTTTTTGCCTTTGGAATCGGTAGTTGG 2339 37 97.3 36 ..................T.................. TCTAATCCAAGCTGCAGTCCATCATCAAATATAAAC 2412 37 97.3 37 ..................T.................. CTGACATTCAGAAAAGGAAGAATTCAGGGGCCGGCAC 2486 37 97.3 37 ..................T.................. AAAAAATAGAATCCACTCAAACCGAAGCCCTGAATAT 2560 37 97.3 35 ..................T.................. AAAAACATGTATTTCAGTCTTCTTTTTGTTGATTT 2632 37 97.3 34 ..................T.................. ATATATGCTTCAGGGGATAGACAATAAGTTTCAT 2703 37 97.3 35 ..................T.................. CTCTTAAAAAGTCCTGACTGTTACAATAAATATTA 2775 37 97.3 36 ..................T.................. TGAAAATATAATCACCGCCTCTCCTTCAGGAAATCC 2848 37 97.3 35 ..................T.................. AAAACGGAGTGGTGATATGCGTTAGGAGGAAAACG 2920 37 97.3 35 ..................T.................. AAATTAAGTCTCTTGCTAGTGAATTTTCGTTTAAT 2992 37 97.3 35 ..................T.................. TTGGGACAATACAAAACGGGCATGTTTTTTGAGTT 3064 37 97.3 35 ..................T.................. AAGCTGGCCTCCGCCCGGAAACTGACAAAAGTAGG 3136 37 97.3 35 ..................T.................. TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 3208 37 97.3 34 ..................T.................. TGAAATCATTCTCCCTGAAAATGTCACCGAAATT 3279 37 97.3 37 ..................T.................. TTCTGTTATCCTGGCTATCTGGTTGAAAAGATTACTT 3353 37 97.3 37 ..................T.................. CAGGCGGCATACTGGAGGCAGTTGACAGCAAGGATTC 3427 37 97.3 35 ..................T.................. CAATTATCTTCTTTCCTATTCTCCTTACGTCAACT 3499 37 97.3 34 ..................T.................. ATATTTTCCTCAATGACTATTGCCAGCGCGGGGA 3570 37 97.3 34 ..................T.................. TGAGTCTGTCTGCTGCACTCTCGTATTCTGTCCT 3641 37 97.3 37 ..................T.................. TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAATAAT 3715 37 97.3 36 ..................T.................. ATCAGTGCGATAACATTGCAAAGTTCATCCTTTTCC 3788 37 97.3 36 ..................T.................. AAAGTCAAATATTCCACTTTTTCAGGATCGGTGTAC 3861 37 97.3 36 ..................T.................. TTATTTCCAGAATTGAACAGTTAGAAGCTAATGTGG 3934 37 97.3 35 ..................T.................. ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 4006 37 97.3 34 ..................T.................. TAAGAGACAAGTTTGGACTTTTAGACGGGGATAG 4077 37 97.3 35 ..................T.................. CGGGAGCTAAGACGGCAACATGGACGACTCTTTTT 4149 37 97.3 35 ..................T.................. TAGCTCCGGGTGATGTTTTTGAAGTTAAAATAGGT 4221 37 97.3 35 ..................T.................. TTTTCAATCGCACACGCAAGACCCTGACTGAACTT 4293 37 97.3 36 ..................T.................. AATGTTACTATCTGTAAGTAATAGTCGTTGCTCCGT 4366 37 97.3 35 ..................T.................. TATGCAAATTCGTATACATGATAATCACCAGTAGA 4438 37 97.3 35 ..................T.................. GTCCTCCTGCTTCTTCATCCATGTATAAACGTTCA 4510 37 97.3 35 ..................T.................. TAGTCGCCATGTTAAATCACCATTGTATAATTAGC 4582 37 97.3 35 ..................T.................. ATAATCGTTTTCGCGGCGACTCCTGCGGCTGCCAG 4654 37 97.3 34 ..................T.................. AATTCGCACACTCAACAAAAAAAGAACCCCTCGA 4725 37 97.3 37 ..................T.................. CTATTGTATCATACAATAGGGTAAATAAAAAAATTAT 4799 37 97.3 34 ..................T.................. CATACATCCTTATAGAGCATCCATATTTTAGAGC 4870 37 97.3 38 ..................T.................. ATTCATAAATAAGATGTTGGGTTAAGTTCCCCACACCT 4945 37 97.3 35 ..................T.................. GTTGGGCTCAGAAAAAGGTGAACGTGTCGAATAGC 5017 37 97.3 36 ..................T.................. CTTCTGAAGCAGGTACGACTTACACAACGAAATCGA 5090 37 97.3 35 ..................T.................. TATAATTTCAGAGGCAGGAAATGTCCAGATGGATG 5162 37 97.3 37 ..................T.................. TTTCCTAAGAAACTATTGCAGTACCGTATTCTTGTTT 5236 37 97.3 34 ..................T.................. TTACAAGTGAGGTGTCAGCCGTGTTCCACATGTA 5307 37 97.3 35 ..................T.................. ACATGGGTAAGAAGCTTAACCAGAAATTCGTAATG 5379 37 97.3 38 ..................T.................. CCCGGATGAAAAGAATGTTCCCTGCCCCGCTTCGGTTT 5454 37 97.3 36 ..................T.................. TGTAGGCTTCAGGAGCTACACAGTAAGTTTGAAAAG 5527 37 97.3 35 ..................T.................. CTGTAAATTAAATCCTCATCCCGCCTGACGAACTG 5599 37 97.3 49 ..................T.................. TAATCAGCATTTTCCGTATGCCCGCACTCAAGGAATGAGCAGTAACATT 5685 37 97.3 40 ..................T.................. AGGAAAAAATTAACTGAAGGCGATTGCCAGCCTTCGCCTT 5762 37 100.0 37 ..................................... CCGAAGAATACGAACCGATCACACTGAAACCCGACAA 5836 37 100.0 35 ..................................... GTCAATATGGCATCTTTGTCTGGAATATAGGGGAC 5908 37 100.0 35 ..................................... TACAGTCGCTTGTTATGCCCGCTACATCGTTTTTA 5980 37 100.0 36 ..................................... CTCGACCTCGTCGTCCTCGTCTACTTCCAGCGCGTT 6053 37 100.0 38 ..................................... TCGGTTAAGCCCGTCTATACGTTTGAGTTAAGCCATGT 6128 37 100.0 35 ..................................... AGCCTCCTGCATTTCAAGTGCCGCTTTCTTCTCTT 6200 37 100.0 35 ..................................... AGCTCTGCGGCTTTCAGATAGACTGACCATGTAGG 6272 37 100.0 34 ..................................... CACCCTTCGAACTCGGGCAATAACCTTGAAGCTA 6343 37 100.0 35 ..................................... TATCCCCTTAGATCCCTATAGACATACATGCCCGA 6415 37 100.0 35 ..................................... AATAATAGAAATTACATAAGTAAGTATTAGTTAAG 6487 37 100.0 36 ..................................... TTTCCAGGGGAGCTCCGAGAAATACACCGTCTATTT 6560 37 100.0 37 ..................................... CTCTTGAAACAGATGGAAAAGTTTTAGTTTTGCCAAC 6634 37 100.0 36 ..................................... TAAAGAGTGGACATGTGTGCAGATGGATACCAGAGA 6707 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 6779 37 100.0 33 ..................................... CCCGGAAACGGTGAGAGCATGACCGAATTAGAA 6849 37 100.0 37 ..................................... GTTAGAAAAAAATGTCCATATACAGACCGAGGCGGGC 6923 37 100.0 37 ..................................... TCGCTTTCGTTTTTTGTATCGAGTCCGTATCCGTCTT 6997 37 100.0 35 ..................................... TTGTTTTGTGGATGCACTGTGTAGGGATAGTCCGG 7069 37 100.0 37 ..................................... TGCTACGATTGACAGCCGGACGAGTCCACATTGCCGT 7143 37 100.0 34 ..................................... TATTGCGGTTCAAACTCCGATGAATCTTTTTTGA 7214 37 100.0 36 ..................................... CAATAAGGTCGCTGCTTTCCGGGCTTGTGCTGCCTC 7287 37 100.0 37 ..................................... AATTATTGTGATAAACTTCTGCAGCTGTAGTAAAGAG 7361 37 100.0 37 ..................................... AAAACGATGTCGCCGGGATTACATCGGACTGTATGAG 7435 37 100.0 37 ..................................... ACATAACTTTTAGCTTCGGCTGCCGTGTCGAATTTCC 7509 37 100.0 34 ..................................... TAATCGTCGAGTTCCGCCCACAGTTCAAACATTT 7580 37 100.0 36 ..................................... TTTCAAGAACAGAGAAGAAGCAGAAAGCGCGACAAT 7653 37 100.0 35 ..................................... TGCAGCCGACGAAAGCAAAAACATTTCTCTTGCAC 7725 37 100.0 40 ..................................... ATCCTCCCGCAACTCCTTATTTCTCATGCTAGCGTTCACT 7802 37 100.0 35 ..................................... GACATTGAAACTGACAACACAGAAGGCAATGGACT 7874 37 100.0 35 ..................................... CTACTGATAGAATTAATTCGAATGGGACGTTCTAT 7946 37 100.0 38 ..................................... CAGATTTGTTTTACTCTTCTAAGAGTAGGTATTGACTC 8021 37 100.0 35 ..................................... TATGGCCTTGGCCTCGCGCAAAATTCGCCTATAGG 8093 37 100.0 37 ..................................... CATTAAAAAAGGTAACAGCCCGAAGTATATCCAAAAA 8167 37 100.0 36 ..................................... TCATAAAATATGCGTTTTCTTCCTCGTTTCTCCATA 8240 37 100.0 33 ..................................... CAGACTTAAGGAATCTATTGTTTGGATGGATTA 8310 37 100.0 37 ..................................... AGAGTGCGACTTTTAGAATACAACTTGATAAAATACT 8384 37 100.0 38 ..................................... GTTTCAGGGAATTCATTTCTAAGAACTCTTGCAGAATT 8459 37 100.0 38 ..................................... ACTACAAGGCGTTCCTCAAAGTAATACAATAATAAAAA 8534 37 100.0 37 ..................................... ACGAATCCCATTAACCTGTATTCAGTCGCTTTCTTGT 8608 37 100.0 36 ..................................... TTTTGCAAATTAAGCTCATCCCTAATCCATGCCGGA 8681 37 100.0 34 ..................................... TAGATGTTGTCGGAGGGGACATCTACAGCAATGA 8752 37 100.0 36 ..................................... TTTCACACTCTCCAAATAAAAAAGGGAAATCTGAAT 8825 37 100.0 36 ..................................... TATACAACTAAAAATAATTAACAGTGATAAAAACAT 8898 37 100.0 36 ..................................... AGGATCAGGACGACGGCAATAATACTGAAGAATCCT 8971 37 100.0 36 ..................................... CGCGGGAACGGTTGGAACTGCAGGGCACAGCGGGGA 9044 37 100.0 35 ..................................... AATTATATATATTGTTATAGGGTTAATAATCATGG 9116 37 100.0 34 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGT 9187 37 100.0 35 ..................................... TGCTCTTGCCAATATTCTTAAAAACGTTATCGTGT 9259 37 100.0 37 ..................................... AGGGCCTTTGCGATCTCGCTATACTGGCTTATATTAA 9333 37 100.0 35 ..................................... TCTCCTCTTGCATTTCTGTCTCCTATTTTTTGGCA 9405 37 100.0 35 ..................................... TGCAATGTCGGGGACCAATCCAGGTCAGCCTCGGT 9477 37 100.0 36 ..................................... AGAATTTCAATTTCCCTCTTTGCTGCGCTGCCTCCT 9550 37 100.0 35 ..................................... AGGTGTTTCGATGGCTCTGTGTTCGATTGCTGACG 9622 37 100.0 35 ..................................... CAACAATAGAATCGTGCGCCCTGGCCACGAGGGGG 9694 37 100.0 35 ..................................... CATTATTCCAGGTGAATGTCATATTTCCATTTGTA 9766 37 100.0 35 ..................................... CTCATTGTTCCCACGCTCCTGTTTTGGCGTTATAT 9838 37 100.0 34 ..................................... CATTCCATTTGTTTCCATCCATATCTGTTAATGT 9909 37 100.0 34 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAAT 9980 37 100.0 37 ..................................... TTAGCTTGCCATATGCTCTGGCTATTTTTCTTTCCTC 10054 37 100.0 34 ..................................... CTGCGTAAGGCTCTCTAAGATACAAGCATATTCC 10125 37 100.0 35 ..................................... CCTGATGTTAGTCTTAAAGTTCGGAGCCACCAACA 10197 37 100.0 35 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAG 10269 37 100.0 36 ..................................... AGCTTAAGCTCAGGCGAAGAGCAAATGGTAAGAATG 10342 37 100.0 37 ..................................... TGGAGATGGGAACCGGAAAGACAAGGACAGCAATCGA 10416 37 100.0 35 ..................................... TTACGTGATAGATGGGAATCAAACAACCGAGATCA 10488 37 100.0 35 ..................................... AGAGGATTCAACATTTGATTGATCGTGCTAAATTT 10560 37 100.0 36 ..................................... CCCATGAATGTCCTCTTAATTGACGTAGATTCGACT 10633 37 100.0 35 ..................................... TAAATGTGGTCAGATGAAACACATAGCAGGAGTGG 10705 37 100.0 35 ..................................... TGATTAATTCCCTGCCCTATTCTAACACCTTCTTT 10777 37 100.0 35 ..................................... TTTCCAAGACGGAGATATCTGGAGAGTTGATAATG 10849 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 10922 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ================================================= ================== 134 37 98.7 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCGGTGCCGTATGGGATACCGTAAAAGAGGATATTCCTGCTCTCAAAGAAGAAATCACTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCAGAATATTGCCCCTCTTTCTGATCCTGCCTAGGGACGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGTCAAATAACGGAAATTTTTGCCCT # Right flank : ATAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //