Array 1 1-1065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000022.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 62 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 123 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 184 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 245 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 306 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 367 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 428 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 489 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 550 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 611 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 672 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 733 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 794 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 855 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 916 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 977 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 1038 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000100.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 140 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 79 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 18 18 62.1 0 ..................----------- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 89.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000031.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 62 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 123 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 184 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 245 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 306 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 367 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 428 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 489 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 550 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 611 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 672 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 733 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 794 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 855 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 916 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 977 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 1038 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 1099 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 1160 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 1221 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 1282 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 1374 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 1435 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 1496 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 1557 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 1618 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 1679 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 28 29 98.6 33 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10747-12301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000031.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10747 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 10808 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 10869 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 10930 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 10991 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 11052 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 11113 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 11174 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 11235 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 11296 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 11357 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 11418 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 11479 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 11540 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 11601 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 11662 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 11723 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 11784 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 11845 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 11907 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 11968 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 12029 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 12090 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 12151 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTGGGTGATT 12212 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 12273 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGGACGAGATTTCACAGAAAATATCTGTTCGTGTTCCCCGCGTATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 322-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000067.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 321 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 260 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 199 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 138 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CTCGACGTTAACGCGTGCGCCGTAC # Right flank : GGGTTGAATACCTTCAGGGATTTAGAGCTACCAGTGTTCCCCGCGTGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000050.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 62 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 123 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 184 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 245 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 307 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 368 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 429 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 490 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 551 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 612 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 673 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 734 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 796 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 857 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 918 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 979 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1040 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 1101 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1162 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1223 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1284 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 1345 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10837-11165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000050.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10837 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 10897 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 10957 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 11017 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 11077 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 11138 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000075.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 112 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 173 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 234 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 295 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 356 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 417 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GTGAGCGGGGATAAACCGAAAAGCCAACCGCCCGCCCGTAATAAACCTGAG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWO010000093.1 Erwinia amylovora strain BCEa23A Ea_BC-23A_contig_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 112 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 173 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 234 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 295 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 356 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 417 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 478 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GTGAGCGGGGATAAACCGGAGATAGCTAACATACTTAACTTATCGCCTAAG # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //