Array 1 216273-215694 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDND01000006.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 196 NODE_6_length_300226_cov_32.3885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216272 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 216211 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 216150 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 216089 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 216028 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 215967 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 215906 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 215845 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 215784 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 215723 29 100.0 0 ............................. | A [215696] ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226202-224405 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDND01000006.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 196 NODE_6_length_300226_cov_32.3885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226201 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 226140 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 226079 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 226018 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 225957 29 100.0 32 ............................. TTTGTTTAAATAACGGAGACATGACCAATGAA 225896 29 100.0 32 ............................. CAAAATGCCTCGGGTAGGGTAATGGGGTGAGT 225835 29 100.0 32 ............................. TCTCGCCGTTAATCGTTATGTCACCTGTACCG 225774 29 100.0 32 ............................. GGCATGCGCGCGGAGGCATACGCGATGTTTAG 225713 29 100.0 32 ............................. GGGAATAAGCACCCGGGCATTCCCGCAAAACC 225652 29 100.0 32 ............................. GGAATGCGGCTTATGCTGGTGCAAGCCAAGTA 225591 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 225530 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 225469 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 225408 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 225347 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 225286 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 225225 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 225164 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 225103 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 225042 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 224981 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 224920 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 224859 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 224798 29 100.0 32 ............................. CAAGACCGCAAAGAGGCGCTGAATCATGAAAA 224737 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 224676 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 224615 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 224554 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 224493 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 224432 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //