Array 1 538-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPA01000053.1 Salmonella enterica subsp. enterica serovar Elomrane strain 144 NODE_53_length_589_cov_0.989177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 537 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 476 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 415 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 354 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 293 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 232 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 171 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 110 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGATCAAATATCAGATAACCCCCGTCGGCAAAC # Right flank : GGCGTGGATTGAGTCTGATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 372392-374127 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPA01000002.1 Salmonella enterica subsp. enterica serovar Elomrane strain 144 NODE_2_length_608124_cov_23.9062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 372392 29 100.0 32 ............................. AGCACTGTTAATTTATGCGGCACGTTCCTGAT 372453 29 100.0 32 ............................. AATTCGCCCGGATGTTCACTTACGGGCTGGGC 372514 29 100.0 32 ............................. TTGATCGGGATTCTGGCCGCACTGGGTGCCGC 372575 29 100.0 32 ............................. GGGCAGATTGCCAGGCGTGACGCGCTGGCCGA 372636 29 100.0 32 ............................. CGAGGGCGGGTTTCCAGTGGCTACCGTATATC 372697 29 100.0 32 ............................. ATTGGCGGGAAATGACGGGGGGCTACTACGCT 372758 29 100.0 32 ............................. TGCGGATTTACCGTCGGCTAAACCACGCTGAT 372819 29 100.0 32 ............................. AATTCTCAGCATATCTTTTAATATCCCCGGAT 372880 29 100.0 32 ............................. GGCGCTGCTGGTGTTGTGACGACAATTGCAAT 372941 29 100.0 32 ............................. ACGATAAACCGATAGACAGCCTGGCATTTGTT 373002 29 100.0 32 ............................. GGTACTTTTGATACCAATAAAGACAGAATTAC 373063 29 100.0 32 ............................. CCGGGGGCTTAACTTCAGGTGCAAGCACCATT 373124 29 96.6 32 ............................A CGGGGGGAAAAACCGCCAAAATATACGACAGC 373185 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 373246 29 100.0 32 ............................. GCGGCCAAGATAATCAGGATCAGCTGGGTCCT 373307 29 100.0 32 ............................. TGTATTTGCGATACGAGACATAACCGTATCAC 373368 29 100.0 32 ............................. GCGTTCGAGCGCAGCTTAACAGTCTGGGAACC 373429 29 100.0 32 ............................. GTGCGAAAACAATAAACGTGGTGGAATGGGTA 373490 29 100.0 32 ............................. TAAACAGACTGAGATTTTTCGGTTTCCGGATC 373551 29 100.0 32 ............................. GCGTTACGCAGCCCGGCAGCACAGTCAGCACA 373612 29 100.0 32 ............................. AGCGGCTACGATGACGACCTGCTGGCAGGCGA 373673 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 373734 29 100.0 32 ............................. GGGTAATTATGACGAGTCAGAGCATATTGCCC 373795 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 373856 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 373917 29 100.0 32 ............................. GGCCTGAACGGCGATCTGATTACGTGGAGTAA 373978 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 374039 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 374100 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTTCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 390290-393370 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPA01000002.1 Salmonella enterica subsp. enterica serovar Elomrane strain 144 NODE_2_length_608124_cov_23.9062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 390290 29 100.0 32 ............................. TACATATCAACGTAACCCGGCTGCGTCTCCGG 390351 29 100.0 32 ............................. CGCGTCGAACTCATCCTCAGCGATACGCACCA 390412 29 100.0 32 ............................. CCTCTTTCAGCCTGGCGGCTTTCTTTCCAGTG 390473 29 100.0 32 ............................. CCACAATCAGATCGAAACGCTCTGGATCACCG 390534 29 100.0 32 ............................. ATTCGACTCGCGTCTTACCGTCTGCTACGTAC 390595 29 100.0 32 ............................. GGGCGACCTCCGTTAATTATCTCGACGTTCCG 390656 29 100.0 32 ............................. CGGGCAATTATACGGCTTTACCTGATAGAAAC 390717 29 100.0 32 ............................. CATTACCCCACTCAAGATACGATTTTGCAGAT 390778 29 100.0 32 ............................. CCTGAACGCAAGGTCGCCACCGTAGCAATATC 390839 29 100.0 32 ............................. GCGGCAGTGAATACCAGGCAAAGCCGCGCCCA 390900 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 390961 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 391022 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 391083 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 391144 29 100.0 32 ............................. GGTTCACGCAGTGGAGCCTTCCACCTGATAAG 391205 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 391266 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 391327 29 100.0 32 ............................. TCTGGTCTGCGTGGGTAACAGCCTACGATTCA 391388 29 100.0 32 ............................. CTACTGAGTTATATCCGAGCGCTGTTGAGTTA 391449 29 100.0 32 ............................. TCAATCAGCATTGCGTTCCAGTCATTCGCCAT 391510 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTCTCGC 391571 29 100.0 32 ............................. TCGGTACACGACATGACCACAACGTCATTCAA 391632 29 100.0 33 ............................. CTGTGACACAGCGCCACGTCGGCCTCAGTCAGC 391694 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 391755 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 391816 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 391877 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 391938 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 391999 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 392060 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 392121 29 100.0 32 ............................. GCTATTCCCCTGATCCCCACTCTCGCCGCCAC 392182 29 100.0 32 ............................. TTAGGGAGAAAACTCGGTTACTCACAGACCAG 392243 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 392304 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 392365 29 100.0 32 ............................. GCGGAGATCCGGGGGAGCTATTTCAGGTCATA 392426 29 100.0 32 ............................. ACAACAAAAACGCCGGGCATAACCAGGCGAAA 392487 29 100.0 32 ............................. TCATTAACGCGGACGCCGACGAAATCAACGTT 392548 29 100.0 32 ............................. TTGGAGACTGTGGGTGTGATCTCCATCGGGAA 392609 29 100.0 32 ............................. GACGTTTGATGGCTGGAAGGTTCTGTTTGAGA 392670 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 392731 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 392792 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 392853 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 392914 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 392975 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 393036 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 393097 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 393158 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 393219 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 393280 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 393341 29 100.0 0 ............................. | A [393368] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCTGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //