Array 1 50-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKN01000110.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N48692 N48692_contig_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 111 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 172 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 233 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 294 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 355 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 416 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 478 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 539 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGGCTCCGCCTTGAAAATAACATCTGACATTGTGG # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 260-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKN01000108.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N48692 N48692_contig_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 198 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 137 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGATAACAGCGGCCACAATATAAACAATGGTTA # Right flank : GGTCTTGAGCAGTGGGCGCAAGAGTCTGGTTATGTGTTCCCCGCGCCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1665-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKN01000002.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N48692 N48692_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1664 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 1603 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 1542 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 1481 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 1420 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 1359 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 1298 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 1237 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 1176 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 1115 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 1054 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 993 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 932 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 871 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 810 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 749 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 688 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 627 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 566 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 505 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 444 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 383 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 322 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 261 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 200 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 139 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGGAATTGCGGGAATTAATATTAAATCTGGCGT # Right flank : GATTTGCGTCAGACTACCGACAGGGGCTGGTATGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKN01000020.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N48692 N48692_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 62 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 123 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 184 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 245 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 306 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 367 29 100.0 0 ............................. | A [394] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKN01000003.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N48692 N48692_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 88 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : C # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 943-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKN01000004.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N48692 N48692_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 942 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 881 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 820 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 759 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 698 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 637 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 576 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 515 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 454 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 393 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 332 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 271 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 210 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 149 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 88 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTTCTGGCAATGGTCTTATTTTTTGAGGTTTA # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //