Array 1 1820678-1819860 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028302.1 Acidovorax avenae subsp. avenae isolate SF12 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================== ================== 1820677 32 100.0 34 ................................ TTGCTCTTGCCGGTTCCCTTCTTGCCGGTCATTG 1820611 32 100.0 34 ................................ ATGCGGTGCCGGTGGCCTTTTCGATGGCCTTCCG 1820545 32 100.0 36 ................................ TCGTAGAAGTCGAATCCACCCGTGCGGCCCATCATG 1820477 32 100.0 35 ................................ ATCAAGCGCGAGATTGAGCGGCTGCAAGGGACCGC 1820410 32 100.0 35 ................................ ACGCAAACGGCCACAGCCAGCTACAGCCCGTCCTG 1820343 32 100.0 36 ................................ CAGGCCACCTCGATGCTGCCGGCCAGCGGCTGCTTG 1820275 32 93.8 35 .........T..................G... TACGCGAGCTTCCAGCGCTTCCCGCCCTCGCTGTC 1820208 32 93.8 35 .........T..........A........... ATGCCGAGGCTGTTGTAGGTAACCTAGCCGTTGTG 1820140 32 96.9 34 .........T...................... TTGAACTTGGCGAGGTTGTTCTCGTGGCTCTGGT 1820074 32 90.6 85 ...................T....A.A..... GACGTGTCGCTGGAATCCTGCGAGAGGACTGCGTGTGCTTGGGTTAAAACTGCTCCAAACGTGGATCAGTGACGCGCTTTGCGAC 1819957 31 84.4 34 .......A.A...A............-..G.. TACCCCCTTACAAGGCGTAGGTCGGCAGGTCAAC G [1819941] 1819891 32 81.2 0 .........T..AT.......C.TA....... | ========== ====== ====== ====== ================================ ===================================================================================== ================== 12 32 95.1 39 GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Left flank : CGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCTTGAGGGCGGGCCCTTCCGCTCCCTCCCTTTCCTTTCTTCCTTCTTTTGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGGCAAGTGGTTGAGGGAAAAGGGAATTTTTACTGGGTGGCGGACGGGGCGCGCAGGCTGCGGGTCGGTTGGGCGGGGTTCGCGGATGTGTGGGGGAAATGGCTGGAGTGGCGCGGGTTTATAAAGGTGCC # Right flank : GACGAGAGGCGTCGCGGCAAGATGTCCGTTATCGGTCCACGCGCAGTGCGTGCGTGAATGCGACCAACCGCCCGACCTGCCCCGCCCCACGCATTTTCGGGCGCTCTCACATCGCAGGCCCGCGCACCCCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGACTCCACGTCCATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGGCCGGGCGGAACCCCAGCCTCGCGTAGGCCGGCGCGCTCCAGGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCGACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGTCTCGTGCCGATGCCCCTGCGCAGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGCCCGAAGGCCTCGGCGTCCAGGAAGCCGACCAGGTGGCAGGGCGCTGCCTCGGCCACCCAGACGGCGCCCCGCAGGATGAGCCGCTCGTGTTCCGCA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4492278-4495263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028302.1 Acidovorax avenae subsp. avenae isolate SF12 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================= ================== 4492278 32 75.0 36 A.TC.ATTG.A..................... TTCCATGATCCGGTCCGCGAAGTCGCCGAGAAGGCC 4492346 32 100.0 33 ................................ AGCGCTCCCCAATAAAGCCGACCAGTTGGGCGC 4492411 32 100.0 35 ................................ GGCGGCGGCTTGCCGAAGGTCGCGGATGGGGCAGT 4492478 32 100.0 33 ................................ GCTATAGCCGGCCTCAGCCGGCCATGAGCGAAT 4492543 32 100.0 33 ................................ AGGGTCCGCTATGGCGGCTGGCCCTGAATACCG 4492608 32 100.0 34 ................................ ACGATCTTGCAGCAGTCGAAGGCCATGTTGCTGC 4492674 32 100.0 36 ................................ GAGCGCGCTCTGGTCGGCAACACCTCGTCATGGTAC 4492742 32 100.0 33 ................................ ACAGCGCGTCCTTTGCGGCCATGCGGATGGCTG 4492807 32 100.0 35 ................................ TCGGTCATGGTGATCCTTCAGGTGTTGGGGCTTGC 4492874 32 100.0 35 ................................ CGATGGGACCGGGCAGCACTGCGTGGGGGTGCTGG 4492941 32 100.0 34 ................................ GGCGCAGAGGCAGAACCCCTGCCGCTGGCCGATC 4493007 32 100.0 34 ................................ TCCCCCGTCGCCACGCTGAAGACGCTGGCCGGCG 4493073 32 100.0 36 ................................ TTCCCTGCGGATGCGCTCGCGCTCGGCTTCGATCCG 4493141 32 100.0 35 ................................ ACGGCGCGGATAGCCTCCAGGTTAAGGGGCAGATT 4493208 32 100.0 35 ................................ GTGACGTAGCGGTCGCCCTCGCTGAACGGCGGCAG 4493275 32 100.0 34 ................................ AACTGGACGCGCTCATGAGGGCTGGTTGCGAGGT 4493341 32 100.0 34 ................................ GCCCTCCAGCCAGCAGTGCGCGCAGTTGCGGCAG 4493407 32 100.0 36 ................................ CAGCCGACACCAGCGAGGCTCAGCGTCACGTACGCC 4493475 32 100.0 35 ................................ CAAAGTGAGTTATGAATAAATTAGGCGGCGCTGCG 4493542 32 100.0 36 ................................ CGCATACAGAACAAACCAGTCCTGCCAACGGCTCAT 4493610 32 100.0 35 ................................ CTAACACCAGGACGACACCTGGCCGCCTTGCTTGT 4493677 32 100.0 35 ................................ GCGCGCGGCCGCGTGGCGCAGTTGCGAATGGCCGG 4493744 32 100.0 32 ................................ GATGTACTCCTGCTCCTTGGCGTCGGGATCAA 4493808 32 100.0 35 ................................ CTCCGTGTCCAGCCATGGATAGGTTTGCAGCGTGG 4493875 32 100.0 61 ................................ AAGGCAGGCCTCACGCTCCTGCAGGACGTGTTTCTGTCGCGCCCCGCGACCGGTCCGCGGC 4493968 32 100.0 33 ................................ CAGGCGCTGCGCCAGCAGCCGGTGCATCCCATT 4494033 32 100.0 35 ................................ ACCCTGAAGTCGCCCGCGGCGCGTGCTGGCGTCGT 4494100 32 100.0 35 ................................ TCGCGGGCTGCTTCGGTCATTGCCATGGTCATGCG 4494167 32 100.0 36 ................................ TGTTCGCGCGGTTTGTACCGAAGCCAAAGCGCAAGC 4494235 32 100.0 33 ................................ AAACCAAAGAGAGGCCAAAAATGAAAATCGCAG 4494300 32 100.0 34 ................................ TGGTCCCGTGCTGGGGCAACCGCACCAAGGTGCC 4494366 32 100.0 35 ................................ CACACCATGGCGGTGTTGTGAAGCTCGCAGTCCAG 4494433 32 100.0 34 ................................ TGACCCAGCCGCCAATGGTTTCCAGGACTGGCAT 4494499 32 96.9 36 ............................G... TGCTCCACGAACGTCATCATGGGGCCGCCCACGATT 4494567 32 100.0 34 ................................ ATTGCCTTACACAGTGAGGTGGCTTTGCCCATTG 4494633 32 100.0 33 ................................ ATGAGGCGGGCCATCTCGTCGTCCTTCACGGTG 4494698 32 100.0 35 ................................ CGCATGTTCGTGGGCGCGCTCACGGGCGCGCTTGC 4494765 32 100.0 33 ................................ AGTTCACTTACAACTGGACGGCAACCGTAGGAG 4494830 32 100.0 35 ................................ CGCTTCCCGAAGCAGGCCGAAGCGCTGGACAACGC 4494897 32 96.9 36 ........T....................... GGCGTCGGCGACATCGTGCTGGACCCGACCAACCTG 4494965 32 93.8 35 ........G.....A................. GACATCGAGGCCAAGGTCGGCGACAAGGCCAAGGC 4495032 32 96.9 35 ........A....................... GAGGTCGAAATCCGCAACAAGGACCGCGACGTCCT 4495099 32 96.9 35 ........................A....... TCTTTCGGCGTCCTGCTCAGGGCTGCCTTCCACCG 4495166 32 96.9 34 ....................A........... TTTCTTTTGGCTGCCCTGGCCGGCCTCGGGCAGA 4495232 32 87.5 0 ...T................C...A.C..... | ========== ====== ====== ====== ================================ ============================================================= ================== 45 32 98.7 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GCAGACCATGCCGCTCAAGCTGCTCAAGCCCTGCGTCGCCACCATCGACGAACTGGCGCGCAACTACCGCACCAGCGTCGTGCTCTGCACCGCGACGCAGCCCGTGCTGGAGGCGCCCGCGTTCGACGGCGGGCTGACGGGCGTGCGCGAACTGGCGCCCGAGCCCACGCGGCTGTTCCAGCAACTGGAGCGGGTGCGGGTGCGCCACTTGGACACGCTGGACGACGCGGCCCTGGCCGGCCACCTGCGGGCGCGCGAACAGGTGCTGTGCATCGTCAACAACCGCCGCCATGCACGGGCCGTGTACGAGGCCATGGCCGACCTGCCCGGCGCGCGGCACCTGACCACGCTGATGTGCGCGAAGCACCGCAGCGAGGTGCTGGACGAAGTGCGGCAGATGCTGAAGGCCGGGGAGCCCTGCCGCGTCGTCAGCACCAGCCTGATCGAGGCCGGCGTCGATGTCGATTTCCCCACGGTGCTGCGCGCCGAGGCGGGCCTGG # Right flank : CTCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACGCTCCCGCCTATCGCCCCAGTCCGACATCCCCCCAGCCCTCCTCCGCTGACACTGCCTCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGGCAACGCCAACCCCCTCATCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTAGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCGGGGCCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACCGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //