Array 1 30610-25933 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 30609 25 100.0 39 ......................... ATGAGATAATGTGGTGTATAAGTATTATCCTCTTCTTCT 30545 25 100.0 37 ......................... TTCAGTTTCCTTTCTGGATTTGCCGACCCGATTTTAA 30483 25 100.0 39 ......................... TTCTAAATATTTTCTTACTCTGCCCGGGTGTTCTACTTT 30419 25 100.0 39 ......................... GTGTAGGACATGTCAGAAACACTGTATTCCTTCAAATAA 30355 25 100.0 40 ......................... AAAAATATGAGGGCAAGAAGTTGCTTGTTGATGGTATTCC 30290 25 100.0 39 ......................... ATTAATAGGATACGGGAGGTTTTCTGTTATTTCTACTTC 30226 25 100.0 40 ......................... ATTTTATTAACATCTTTCACGTTATGTATTATTTTCCCGT 30161 25 100.0 37 ......................... GCTTCATCATGGTACGGTGCAATTGCCCCGCAATTAT 30099 25 100.0 40 ......................... ATAACTTTACCTAAACCTTATGAAGGCGGATATGGACCAC 30034 25 100.0 35 ......................... TTATCTACAATAACTTCATCATAGTCTTCAATAAA 29974 25 100.0 39 ......................... TATACTCAGTACCGTCACACAAAATGAGAACCACTGGAG 29910 25 100.0 39 ......................... AGTGATATATATGTTTTTCTTTCTAAACTTTCAATTTCT 29846 25 100.0 44 ......................... ATTTTATATTCCGCTTTGATTTCATCTATTCTTACAAAATCCTC 29777 25 100.0 38 ......................... TTATTGAAGGCTTTATTTCCATAAAGTCTCTTAAGATA 29714 25 100.0 39 ......................... GATTATAAAGTTTAGAGTTTCTCAAGTTGAGAAGTTAAC 29650 25 100.0 39 ......................... GATACAGCCCTTCGATACGCAGGGTTTATTATCGGCACA 29586 25 100.0 39 ......................... ATACAATTGTAGAATTTGAAAATATCAAGAAACAACTTC 29522 25 100.0 33 ......................... TTGAATTAGAGATTTTGACTGACTGTAGTCCAG 29464 25 100.0 41 ......................... CGCCCTCAGTCCATGATGATTACATTTTCCATTAGGTGTAC 29398 25 100.0 38 ......................... GGATTATTATGTTATTTGCAATTTATGTAACTGGAGTC 29335 25 100.0 38 ......................... TGTTAGCTTCTTTTCTTCCACTAATTGCCAAAAATCGT 29272 25 100.0 36 ......................... TCATCTTAAGTCAGCCTGTCCATCCGTCATCATCGC 29211 25 100.0 40 ......................... TTTTTGTACTCCTCTTCAGTCATCGCAGACGCAATGTCAT 29146 25 100.0 40 ......................... TTTTATGAGTTTATAAGAATCTACTAAAAAGTAGACGCTT 29081 25 100.0 40 ......................... CATAACACTATCACCTCACCGGACATACCAGAGATGCTCT 29016 25 100.0 38 ......................... CTAATTATGGTTTTTGTTCTTCTAAAAATTTGTACTAT 28953 25 100.0 41 ......................... TCGCGTTAGCAGTACTGCACCACTGAGGTGGGCATAATGAT 28887 25 100.0 40 ......................... TATACAAATTCCACAATATTCCCTGCACCATTAGTAGAAT 28822 25 100.0 39 ......................... CGTTTATTTCGACAGCCTCTATGTAAAGCGGATCTGGGT 28758 25 100.0 39 ......................... CGTGGTAAAGCAGAGCTTGTAGGTAAACCTTCCACTGTT 28694 25 100.0 41 ......................... GAAAGGTGATCGCAAAATGGAAGAAGAAAAAATCAACAGAA 28628 25 100.0 36 ......................... AGTCTACTCCAAATTTCTTCGGTTTCCCTGTTATAT 28567 25 100.0 35 ......................... ATCATTCGACATGGAGGTGAAGGAAGATGAGTAAG 28507 25 100.0 37 ......................... AAATCTTCTTTATTTACATTTTGCTCTATATCTTCTA 28445 25 100.0 39 ......................... TTTACATGCTCACAGAGGTAGCCGTAAGCACCAGCTTCA 28381 25 100.0 39 ......................... TTATATCCTCAATGCGTGGCGTAGAAAGTTCATGCCCAC 28317 25 100.0 34 ......................... TACTCCTTTACTATCCTCTCCTTAAGCTCCTTAT 28258 25 100.0 42 ......................... GAAGGAGGGAGGAGGTCAGTTTTAAAGGATTTATTTTTTCTC 28191 25 100.0 34 ......................... GTAGTATTTATCTTTTCTGGAGTGAAGAAATTCA 28132 25 100.0 41 ......................... AAGGTTACTCTGTCTGGTGTACAGAGTGTTAATGTCTCAAA 28066 25 100.0 38 ......................... CCTTATATTCTCCCATAGCGACATAACATTGTGGTGTT 28003 25 100.0 39 ......................... GGTATAACGGTCAGCTAGTTATTAATACAACATTTATAA 27939 25 100.0 38 ......................... GGTTTAGTCTTCTTAACTTTGAGTGTTTCGGGAGGTTC 27876 25 100.0 43 ......................... ATTGCTATATCCGCTAAATCGAGTTTCTCAGCAAGAATAGCAG 27808 25 100.0 39 ......................... TACAAAAAATGAACGTTAAGGGAACTGAAAACCATTTAT 27744 25 100.0 39 ......................... CAAAACTAAGAGATGCGATTCATGAAATCATAGAGACAA 27680 25 100.0 40 ......................... AATATCTCTGTCAACTTTTGTAGTATCTTGTTGTAGTCGT 27615 25 100.0 39 ......................... GAGGGCAGTCTGTAAACGGCTAACGCGTTGGTGGTCGCA 27551 25 100.0 38 ......................... TTAAGATCTGGAGCGACATATGTTAAATAATATCTCTG 27488 25 100.0 39 ......................... ATTATTAGTTGAAACGGGCCTGAGAACTGGGGAACTGTT 27424 25 100.0 39 ......................... TAGCTTGAGTCTTTATCATACCTTTTTGCATTTCAATGG 27360 25 100.0 39 ......................... GTTAAAGAACTTAAAAGAAGAATTAATAAACTCAAAAGA 27296 25 100.0 40 ......................... AGGTACAGAAGAGGGATAACGTAGTTATTGCAGACGCATT 27231 25 100.0 40 ......................... TTAGAAATTTCATTTAATGCATATTTATATTTAAGTTGTG 27166 25 92.0 36 .......................TT TTTGGAGGATCAGAACTAGAAGAAGTCCTAAACAAA 27105 25 100.0 38 ......................... ACTAATCTCATTATTCGTCTATAGGCATACATTTGATA 27042 25 100.0 40 ......................... ATACATATATACTAAAACCGTTCTCACGTATTTCGTTCTT 26977 25 100.0 38 ......................... TACTAATCCAACGAGTTGAGTTTCAGAAGTTCCATTGT 26914 25 100.0 43 ......................... AAATGAATTTAAAAGTAGTTTTGCTACAAAGAGGATTAACTAT 26846 25 100.0 38 ......................... TTTGAAATTAGCAAGTCTGTGAATTGTCATTGATAATC 26783 25 100.0 38 ......................... ATTAATACCTAAGTTAGTAGCAAATATTGTTACGCCAA 26720 25 100.0 37 ......................... ATAGATGAATATGTAAGGATACTCAAGAACCAACTAC 26658 25 100.0 39 ......................... CTATGAAGTAATTCCTCAATAGTTCTTGAATCAGGGATT 26594 25 100.0 37 ......................... AATCCTCCTGCACCAGTATGTCTCCAGCCGAATTGGT 26532 25 100.0 38 ......................... TAAATGTCTGAAGAAAAACAATTGAAGAAAACAATTGA 26469 25 100.0 36 ......................... TTATTGAAAAGGAAGAAATTTGATGAGGCTGAGCAA 26408 25 100.0 39 ......................... ACTCTTGGCTCTGGAATATTATAGATACTCAAATGTCCT 26344 25 100.0 41 ......................... CGAAAAATATCGGGTCTGTCCTTTCCCAGGGCTTTATTATA 26278 25 100.0 40 ......................... AGATATTTCTGGAAAGCTAACTCAGAGGCTACGTCAGCTG 26213 25 100.0 40 ......................... TACTATATAATTGCCAACTCTCTAATTCTTTGACCTCACC 26148 25 100.0 39 ......................... AATATATTTGTTAGTGAAAGAAAATGATGAAATATGATA 26084 25 100.0 38 ......................... ATTTTGCGTTTACCACGAAATTCATAGACCGACTAACA 26021 25 100.0 39 ......................... CTGAACTTTTCGAGCTGTTCCAGTGTCTTTTCTCTTTGC 25957 25 84.0 0 T....T...A....T.......... | ========== ====== ====== ====== ========================= ============================================ ================== 74 25 99.7 39 GATGAATCCCAAAAGGAATTGAAAG # Left flank : TTTCTTAAACTTTGAAAGATCACTATCTGACATTTTTTCGGAAACTTCATTGACCTTAAAATCGATGTTTATAAAGTGTTAATTTAATCGTCGTATTATTTTTACGTGAAACTCGCAGTTTAAAAGAGTTTTTATAAGGATTTCTGTTTCGAAAGATTGAACAATATTTGTTATGTTTTATCATTTTTTGAAATTTGTTTATCGTTGCGATACTGTTCTAGGAAAGGTAAAACTATAATTTTGGTATATCTAAATTCGATTTCTATGTGAGGTTTAAAAACGTAAATTTAGTAAAACTGGTGCGACTAATACGATGATAGTACCGAATGATTAACATTTATAAACAACACTTTTAATTCAACTCTAGAGTTGAACAATGCGACCAAAAAAGGGAAAAGAAAATACTAGGAAAAACGGTCGCAAGAAGAAAAAACCTTAAAAACAAAAACTTATAAAGGAGAAAAACGAAAAATGAAGTAAAATAATATAAAAACAAAACG # Right flank : ATATTGATTTCATTTTGTTTTATATTAACTATATCTCATATTGAAGCTGTTGTTGTATCAAGTAGTTGAGAAAACATATCCGAGTTGGAAAAAGGCATTCTTTATAGGACAGCTTTAGCTATGATGGGTATTGAGAAGGGGGAGTTCTTTAAGGAAGTGGAAAGTATAGGAATAGGAAGTAGACCTATTACGGATTTAAAACACACTACTAAGGTTATTAATTATTGAGTGCTTAATACCAATTCCTAAAGCCTACTTTTACTTGAAAGGAATAGAGATAAGGGAAATCAGCGAGTACTTAGAAAGTAAAATGAGAGGAATTTCTATTGTGGCTAGTAAAGTATTTAATGAAATCAGTGCTAAAGAAAATAAGTACAAGTCTGTAGTATCACTTACATTTTTCATTTGAAACTGGGTGTGAAATTAGGGGTCGGACTTTCATTGAGGTTTCATGAATTTGTATTCAACCTCTCGTCCTCATACCCCTTATATTCCTCCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 32702-39897 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 32702 25 100.0 38 ......................... TTCCTAACTTCTTTCGTAAATGTTAGGAAAAGATTTAA 32765 25 100.0 40 ......................... ATTAGCATCAACAATTTTCGATGAAGGAGTAGACATACCT 32830 25 100.0 37 ......................... ACACTAATAATATAGGATTTGTCACGGAAGATGATAT 32892 25 100.0 36 ......................... ACTTTATCTTTATACCGTAACTCTATACTGGAGACT 32953 25 100.0 40 ......................... AAGATAGATGACAAGATAACAATAAATTTCATACAAATAG 33018 25 100.0 38 ......................... CGTAATTAAGCCCGATTTGTACACCACGCCGTGGGTTC 33081 25 100.0 38 ......................... TGATTGATCACAATGAGAAGACTGTAAAGCTGATAAAC 33144 25 100.0 37 ......................... TGTTGAGGCATAAATTAATCTATCCTTAATGAAAAAT 33206 25 100.0 40 ......................... TTCTTCCTCAGCCTCCATTTTGTTTATGATTTGTAGTGCC 33271 25 100.0 40 ......................... TTCAATAATCTCTATCTTTCCAAAATCTGTAAATGAAGAC 33336 25 100.0 40 ......................... TATGGGAATGTGAACAGCTTATCCTCATTTTATCCCCAAT 33401 25 100.0 40 ......................... TTTCTGTAATCTCCCTGCTTTCTTAACGTTATCTTATCAA 33466 25 100.0 39 ......................... ATGAACTGTTTGCCCTACTTGATAGCCACTGATTCAATT 33530 25 100.0 37 ......................... TCGCAAAGCGAAAAATTGAAAATTTTTACAATCAAAA 33592 25 100.0 43 ......................... GTAAAAATGATGTTCAATAAGTTGTATGGAGATGAAAATTCAC 33660 25 100.0 40 ......................... GAGATTATAGCCGAGATAATAGAAGAATCAAAGCCAAATT 33725 25 100.0 40 ......................... GTATACTCATTCATAATCTTTTCCATTAAAGCCAAAATAC 33790 25 100.0 43 ......................... GTAAGAGTGTTGAAATATTCATCTACAACTAAGTAATCAAAAT 33858 25 100.0 41 ......................... TATTCATTAATTCAGACAGAAGAGAAGAATTTTGATTATTC 33924 25 100.0 37 ......................... CTCACTCTCTTGTAATTTTTCTAGAGCGATTCTAAAT 33986 25 100.0 40 ......................... CAGTATATTTGTTTAAGTTTTCTTGCATATTTTGTCGCTT 34051 25 100.0 38 ......................... AATATATTGTTGATATTGAGGAAATTGGAACAAATACA 34114 25 100.0 40 ......................... ATATAACTTTACACACGTTACACAATAAACCATGAACCAA 34179 25 100.0 39 ......................... TTTATTTTTATTTTTTCCGTTAGGGGTGGGGGGATGTTA 34243 25 100.0 40 ......................... GGTACATCTTGGCTTACTATTTTATAGGCTGTCTTCTCTG 34308 25 100.0 36 ......................... GAAATCCTAAAGGCGGTTCAAAATCCTTAGCGTAGT 34369 25 100.0 38 ......................... TTTAATTTTCTTAAATAGTCAAAAAAAGAACTACTTCT 34432 25 100.0 39 ......................... TATTACTTTGTCACATGCGTAATACTAAGATTGTTATTA 34496 25 100.0 39 ......................... GAAGTAGTTAGTAAATGCTACTCGACGTGTGAAAATATA 34560 25 100.0 40 ......................... CTAAAAAGAGACTTTTAACTGGGGAGTTTAATCACCGTCG 34625 25 100.0 40 ......................... TAAAGCCGGAATTGTTACTGTACAGTTTTCTTTCTCAACT 34690 25 100.0 40 ......................... CTGTAAACTAGAGTTGAAATAACACTTCTATCAAGAACAA 34755 25 100.0 39 ......................... TTTGGCTATTTCGATAGCTTGATTTAAGTCACTAATAGA 34819 25 100.0 37 ......................... TTGGAATTTTGGCTCACCCCCTTTAAGTATTCATCTA 34881 25 100.0 35 ......................... TTAACGGAATCGGTCTAGGTGATTTGCCATTTAAC 34941 25 100.0 40 ......................... AGGAGGAGCTGAACGGTAACCCTATGGTTGACAGTGAGTT 35006 25 100.0 35 ......................... CTTTTCTTTTCTGAGTGTGGACAACAATTTCTAAA 35066 25 100.0 38 ......................... TCTTCCTTTTGTGGCTAATTGGTCAAATGATGTTATCA 35129 25 100.0 39 ......................... TAATATATCAAATATCTTTTGAATTGTTGAACAAGTTCT 35193 25 100.0 39 ......................... TTCTACTTATCAAACTAGTAGGTCTAACATATTACGTCA 35257 25 100.0 41 ......................... TAATAAGAAGAAAATTGCTAAATGTTTTGAATCATAATGCT 35323 25 100.0 37 ......................... AAGAAACCTTCAGAAATCCAAATTGAGATATGGTCAA 35385 25 100.0 41 ......................... ATCACTAAATCATTAACTCTGACTTTGAAAACCATCTCAGA 35451 25 100.0 38 ......................... AGCTTTCTTAATTAATCCACATGAACATGTCTTACTAA 35514 25 100.0 40 ......................... GCAAAGTAGTACCTTCGGTTTGTCTTATCCCGCTTAATAC 35579 25 100.0 41 ......................... AACTCCCTAACGAACTCTATCTTATCTTGCTTATCCAATAA 35645 25 100.0 42 ......................... AAGATCCACTAACAGTGCTAAAGCCGATCATTGGTAACCGCA 35712 25 100.0 39 ......................... TTTGAGTTACTGTCAAAGATTAGCAATTTTTGTTTTGTT 35776 25 100.0 37 ......................... TTTCTTAACTACAGTGAGTGGAAATATATCTTTAGGA 35838 25 100.0 37 ......................... GATCTTCATGACTATATTAAGTCTTTGGCTTTAGAAG 35900 25 100.0 38 ......................... TTTAACCCCTCTTCAGTATCAAACAAGATTATCTTGTA 35963 25 100.0 40 ......................... TTATGAAGAATAAGGATAACTTTGTTCTTGACAGAAGTGT 36028 25 100.0 35 ......................... ACGATTACTGGACAGGGTGGGATGGTGAAATTTAT 36088 25 100.0 42 ......................... CGTACTAGTAGTAGCTCTTCTCTCACTATTTGCAATAAATTT 36155 25 100.0 39 ......................... CTGAATTTCACCCATGAATATTCTACTCCTGCATAACTC 36219 25 100.0 40 ......................... GGTAAGCCTTTTCGATTGGTACATTTAATTTACTGCCGTC 36284 25 100.0 38 ......................... AGCAGAATCTATAGGGAATTCACTTGGAATTAATACTG 36347 25 100.0 39 ......................... TTAACTATCTCATTTTCCTTCGGCAATTCGGTCTGTTTT 36411 25 96.0 41 .........A............... TTTTCACTTTCAGCAATGACTAATGCTATACCTTCATTATC 36477 25 100.0 38 ......................... ATCTTATCTAAATCTATTGCTGAAGAAAAAGACAAAAG 36540 25 96.0 38 .........A............... ACAGAACACTCCTCATTTTCATCTTTATGTACACTCCA 36603 25 96.0 37 .........A............... ATCTTTGCTCAAACTGGAAACTTTGCAAATGAAGTTT 36665 25 96.0 44 .........A............... CTTTGGGGTTATTTAAAGCTTTCGGAGAAAGATATTAAAAAACT 36734 25 96.0 37 .........A............... TTTTTTCCTTCTATCCTGTATGATATTCTTTCATCAT 36796 25 96.0 37 .........A............... GGCATCTGAAATATTCTTTAAGTGAAGATGATAAAGA 36858 25 96.0 39 .........A............... TTTTATATACGCTCTGTAGTCTGTTTTAACATTAATATC 36922 25 96.0 39 .........A............... GGTGTCTCATCACCAATACAAATCGCTGAAGATATTGGT 36986 25 96.0 38 .........A............... TTTATAGATCTAACTAATGTTCGTATTAATTCTCTATT 37049 25 96.0 41 .........A............... GCAATGAGAGGCAGTGGAAGAGAACCAATTATAACGTTATA 37115 25 96.0 40 .........A............... TACAGGTGATGCATGACTGGGGATCGTGACCCCAGTCGCA 37180 25 96.0 34 .........A............... TTTTATGCAAACACACCTGTGATTATCGGAACAA 37239 25 96.0 40 .........A............... GGTAGGTTTATGACTTGAGGTACAGCATATGTGTATGCAT 37304 25 96.0 39 .........A............... GTGATATTGGCGGGTAGTTGACCAGTTGAGGTAAACGCT 37368 25 96.0 39 .........A............... GTGATACTTCAAAAGTAATGTAATTCTGAACGATATCAC 37432 25 96.0 39 .........A............... TTAACCACAGCTGTGGTATCAAACTTGTTGTGGGGCAAT 37496 25 96.0 37 .........A............... TTTCCGTTTGCTTTACGTAGAGAACGCCCTATACGTT 37558 25 96.0 40 .........A............... ATAGACTTTTCACCATTGCTGGTAAAGAAAATGTATATTA 37623 25 96.0 38 .........A............... TTAGATCTTTTGTAGGAATAAGAATTGCCCATTTCTTA 37686 25 96.0 37 .........A............... TTAGGGTCTGGTACCAGTTCCTTGAACTCTTCGAACT 37748 25 96.0 39 .........A............... GCCTCAAGCTTAGCGAGCTCCTCCCCATATTTACCGACG 37812 25 96.0 40 .........A............... TATATGTTAATACAAAATAGTTGTTACTAAAATCAAAATG 37877 25 96.0 40 .........A............... ATTTTCTACGAGATAATTTATTGTTGAGTACACCCTCATA 37942 25 96.0 37 .........A............... ATGAAAACGGACAGCCCATGATAGTCAATGACCCAAT 38004 25 96.0 40 .........A............... TTTTGTGGTGACATTATTTTAATTCCCCACGTACAATTTT 38069 25 96.0 40 .........A............... AGTTTCTATACCAGCTAACTCTTCAATTACTATTTATATG 38134 25 96.0 39 .........A............... TTTTATGTTGAAGGGGTTTAATATGCCACAGGAAGAGCA 38198 25 96.0 39 .........A............... TAATATATGCACTAGCTGTAATGAATGATATTCCAGTTT 38262 25 96.0 39 .........A............... TTTTTTCTTCTAAACTAATCATTTTTCACCCCTAATACT 38326 25 96.0 44 .........A............... GAAAGTTCCCATGGTCTGGAGATTCAAAATGAATGCTCATTAGT 38395 25 96.0 37 .........A............... ATTCCATTAAAATTTCCTTTAAATTTACATGATCTAG 38457 25 96.0 34 .........A............... GGTATTTAGGCGTTTCAACACAACATGAGGTTGA 38516 25 96.0 39 .........A............... GTGTACCAGTCGTCACTGTTTTTATTTGCGTAGTGGTCT 38580 25 96.0 44 .........A............... ACCCTCACTAAAAAGACCTTAGGTAATCTCTCCATTTGTTTGAT 38649 25 96.0 40 .........A............... ACCTGAACATTTAAATTTTAACTATTAAGAATGGTACATC 38714 25 96.0 45 .........A............... TTATATAAACTATAACATCCACTGAATGTTAGTCCACTTCTTGAA 38784 25 96.0 39 .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38848 25 96.0 39 .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38912 25 96.0 39 .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38976 25 96.0 38 .........A............... GTAGAGGTCCTCTAGCGGACTTTGTTAGTAAAAATTTT 39039 25 96.0 38 .........A............... ATCATCCTCCTCATTGTCGATACTCCCTTTGTGAATTT 39102 25 96.0 36 .........A............... GATAACAAATATAGCTACTCAGGTTTATAATGCTGG 39163 25 92.0 40 .........A..........A.... GTTTAATGCTCTAGCTAATTTCATAGCATAACCTTGGTAA 39228 25 96.0 41 .........A............... TTAATATAACAACACTTATATATCTGTTACGCAAAAATTAG 39294 25 96.0 39 .........A............... AATGTTTGCTTTTATGACAGTAAATAAAAACATGTTCCT 39358 25 96.0 39 .........A............... TCAAGAATCTTTTGCAATACATCACCTGAGATCCCATAT 39422 25 96.0 40 .........A............... AATAAGATGGGATCTGAGGAGGAATGGGAGGAAGAGGAAT 39487 25 100.0 38 ......................... TTGTTTCTTCCCCCTATGTCTACTTATTATTTTTTCCC 39550 25 100.0 40 ......................... AAGTTAGGATCTAGCGGAATAAAAGTATACTCAAGTTTAT 39615 25 100.0 41 ......................... AAAGCACAGTCAATAACGTTATCTGGTATCATATTATCAAA 39681 25 100.0 39 ......................... CTTTCTCCTTCCCTCTGATCTCTCGCTGAATTGAAAAGA 39745 25 100.0 41 ......................... GTAAGTATTGATGCTAACATTGACTTCGCTGTCCCAGGGGC 39811 25 96.0 36 .......................G. AAGTATAATAACGATAGTACTAAAATTAATTGATCC 39872 25 88.0 0 .....T..T...............A | T [39894] ========== ====== ====== ====== ========================= ============================================= ================== 113 25 98.2 39 GATGAATCCCAAAAGGAATTGAAAG # Left flank : GAGGTACCCAGTGTTGAAACGAGCTTTACCATAGCAATATTTTCTTGAGAAAGGTTATATTTTTCGTTTTGGAAAATGTTTAGTTTTTTGCGGTTTATAATTTGACGTGAAATCCGTTGTTTAAAAGTGTTTTTATAAATATTTCTATCCCGTGTAATTGAATAATTTCTGTTATATTCTATCATTTCTTGAAAAATGTTTAACGAGACGATACCAGTCTAGGAAAGGGAAAGTTTAGATTAGCGTCTCATATTTTTCGTTTTTTACAAGAGATTTAAAAACGTAAATTTAGTAAAACTGGTGCGACTAATACGATGATAGTACCGAGTGATTAACATTTATAAACAACACTTTTAATTCAATTCTAGAGTTGAACAATGCGACCAAAAAAGGGAAAAGAAATTACTAGGAAAAATGGTCGCAAGAAGAAAAACCTTAAAAACAAAAACTTATAAAGGAGAAAAACGAAAAATGAAGTAAAATAATATAAAAACAAAACG # Right flank : ATAGATAGTTAAGGGAAAAAGGGTGATAAGTAGACTATTACGACAATAGATAGAAGTTACCAGATTATCTTATCCTCATTTTCCTTAAACTCATCTCCGATCATAATCCTCTGATTAAACATTGCTTGTGTCACCGGTAAGATCATTACCGAAAACCTTCCCTCCTTATTCGACCTATAGAGGACTCTAAGCGAAGCGACAACGTCTTTTAACCTTGCTGAGTTCAGATCCCCAATGAACACACTATACTGTACCCTAACCAAACCCTTTTTCTTTAGTACATCAGCTACTCTATTTCTCATCCCGTCATCACTTATATCATAAAACACTATATACAGCATTTCACTTCGCCATAAAGGGCCTATACTCATCCCCGTGGAGTATTGAGTTTACAAGCCTCCTAGCTTGGGTGTATATTTCGTCCTCATCAAAAACGAAGGTGGAATAAATCACTTTTAAGTCTTTTAACTTCTCATAATTTTCTCTCGCAAGTCCTATCA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGAATTGAAAG # Alternate repeat : GATGAATCCAAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2662855-2663010 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 2662855 24 100.0 41 ........................ CTAAATTATGAGTTTCATCAGTCATACTTTCAATTCCATTA 2662920 24 100.0 43 ........................ GCCGTTAATGACCAATCTCTTTTTGCATCCCAGAAGTACTTTA 2662987 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 3 24 100.0 42 ACTTCATTAAGAGTGAAAAAAGAG # Left flank : TAGTGGTACTACCGAGACCTCATTATCATCATTACAAACAGACAAGGGGCTTAAAGTCTTATGTGTCCTCTTTCTATATAGTATTGCTAAACTGTAAGAACTTACAGCGAATTTTTCTACTAACTAAGCCAGATAAAGCTGAGACACTGATAAAAAAGACTGTAGAAAGTTCAGTATTATAAATCGGAAACAATGTTTGTTCTACGAAGATAATGAAGCATATTGGTTATAATTCATGAAGTAGAAACATTAAAACCAAAACTTCAACGTACTTCCGACTATACCATAGATAGTGAGCTTTTTCAAGATCTTTTAAACAATTTTCTTACAAAAGACTTTAGCTCTGGGGAAAGGTAAAAGGTTAAGAAGAGAAAAAGATACCTAACGACGATAAGATTGTAGTGATAGGTTCAGAGGTAGGGGTATTACAGTTAGAAGAATAGAGCCTTTGCTATTAAAATAAAATGACTTTAAAGCCTTTAGTAAGATTGGGATATTCC # Right flank : GAGTAAGTTTATAAGGGGTTAAAGATGATCTACAACAAACAACATAGTTACTAATGATTCAAGAAACGCTAAAGCCATTAACAGCAGGACTATAGGATTTGTAATAGCCTTTTTAACACTCTCTCTGTACACTATTGCTAAACCCGATAAACCGGCTAAACCGGGAAAAAGCAAAAAGGGTCACATGTTGTTTGCCATATATTCCTTGACACAAAGAAAACAGTACAAATTCCCGAGTTGCTTGTTACTCACTCACCTAACATACCAGAACTTACAAGACCTATTAAAACCGCTACTAGAAACCATAGACCTATACTTTTTAACTTCATAAAGATAAAAAAAGGGAAAGTAACTTATTTTTACAGACCGAGAGTATTTACGCCAGACTCAGTGTTATAAAACTTCTAAGTGATACTTCAATCACCGGTGTACATTAGCAATAAAAAGAGTGTGACTTTATTAAATGGTCGGTTTAGGATTTATACCTTATTAGCAGAATA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTCATTAAGAGTGAAAAAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 2667177-2664097 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 2667176 24 100.0 39 ........................ GAATTGCCAATAAAACAAAAATTAGGAGACAAAGCAGAA 2667113 24 100.0 41 ........................ AAGAATAACACTCTACAATTGCTGCTTAACTTGTTAAGCAG 2667048 24 100.0 46 ........................ ATGCTACTACTGGAGTAAAATATCAACAGGGATCTTTAGTTCCTAT 2666978 24 100.0 39 ........................ ATGTTATTCACTATAAAATTCCATGTCGACTGGTCAGAA 2666915 24 100.0 39 ........................ TTAAATGTTGAATTAGAGATTTTGACTGACTGTAGTCCA 2666852 24 100.0 46 ........................ ATTATCTTATTTTATGTCAAATTTGTTTGTGGTTAAGCTCTTAGAA 2666782 24 100.0 43 ........................ AAAAAAATAGGAAAAGAATTGACTTAAGACACCCTAGGGGTAG 2666715 24 100.0 39 ........................ ATTTATTGACGATGAGGAAGAGCTTAAGCAATATTTTAA 2666652 24 100.0 40 ........................ TGGATAAAGTCTATGACGTCTAACGGTACACCAAGTTCAG 2666588 24 100.0 44 ........................ TTGGACTAGTTCTTCATCCAGTTTAACTGTAATTACTCTGAGTT 2666520 24 100.0 41 ........................ TTTGTTCATTTTTACTTGAACTCTGTTCTTTTCTAGCTGTG 2666455 24 100.0 42 ........................ TAGTCAGAGCATATTTATTTAGGCTGTCATGCACAATAAAGA 2666389 24 100.0 38 ........................ CTTTTTCCATACTCGACGTAACTTTTACTATATAACTG 2666327 24 100.0 43 ........................ ATTAAAACAGATATCTATATCATATTTGGAAGAGTGGGCAAAT 2666260 24 100.0 42 ........................ ACAGAACTTCCAGACTAACGTAACTAAGTTTACTAGTGTAAA 2666194 24 100.0 41 ........................ CTACCCCTAAGGGGAAGATATTCAAATTAAGTTTCGAATAC 2666129 24 100.0 41 ........................ CCAGCACCAGCCAAAATATCCCCAGCTTTACCACCAATCAT 2666064 24 100.0 40 ........................ ACTTTTAGTGTGCCGGCATCTAGCGCTCCAATCCATGTAG 2666000 24 100.0 43 ........................ TTTGGAGCTCTATCTCACTCATTACAAAGTAATGGTTTTGTAG 2665933 24 100.0 47 ........................ TTGGAATATTATGACGGTTCAGCTGACCAACAAGCGATTGAATTTTT 2665862 24 100.0 37 ........................ AATATCATTAATAACTCAAAAATTACTGTTAATATTA 2665801 24 100.0 40 ........................ TCTGTTATAGATGATCAATTGGCTTTTCAGTTAATGAGTT 2665737 24 100.0 42 ........................ GTCATTATCATGATAACTTATAATTAATGCGACTTCATCTTG 2665671 24 100.0 41 ........................ ACAAATTAGCGAACCATCGCGAAGCATGTCCACTACCTCAT 2665606 24 100.0 40 ........................ TTTGTCTCAGCATCATCCTCTGCGAGCTTCTCTAATTTTT 2665542 24 100.0 41 ........................ CAAACTGTCTCAGGTCTTTGTTAAATTTTCTTATTGTAAAG 2665477 24 100.0 45 ........................ TATCGTATTCTACTGAATCGCTTTCGTTTACTGCTAATCCGCCCT 2665408 24 100.0 38 ........................ TGATCTGAAGACTCGAGTTTAACAGTCATCAGCTTTGG 2665346 24 100.0 17 ........................ TTTGCAAAAGCGGATAC Deletion [2665306] 2665305 24 83.3 41 .G....AA.A.............. ACGACTGTAGTAGTGTTAGGTCCTAATAACGGGATGCTTAT TA [2665299] 2665238 24 100.0 42 ........................ ACTACAACTGTCAGAGTGGAGAAGACCAGGCAATTCATTTAC 2665172 24 100.0 40 ........................ CTCTCACACTGATTTTTAACTATGAAAGACGTGAAACGAA 2665108 24 100.0 43 ........................ CGGATTGCCTTATCCGGATATCACGGATTCCATAGTAATTAAT 2665041 24 100.0 43 ........................ GACGCTAACACTAATGAACGAATGTTAGGTATATCGACACCCT 2664974 24 100.0 43 ........................ AAATAGGCTACAAGCTGTGGTATATCATTACCCAAAACATTTG 2664907 24 100.0 42 ........................ TTTACCCGAATCATCAGTACCCAAAATTAGCATTGCTACCCC 2664841 24 100.0 41 ........................ ACTAGAAACTGCAATTGATGTTTGCCTTACCGCGAAGTTCT 2664776 24 100.0 40 ........................ AAACGTTGTATGGGCTGTAACTCCATACAAAATATTGAAT 2664712 24 100.0 40 ........................ GGAAAGAGTACGAAAAGTCTGGTATTATTATGATAATAAA 2664648 24 100.0 41 ........................ ATTATTAAATCTATTATAATCCCGGCTATCGATCTGGTCCA 2664583 24 100.0 42 ........................ AACTTTATACTTCGCTAGCGCCTCCCATGTCCCTATCTTTGG 2664517 24 100.0 40 ........................ TCCTACTTCTTCTTATGCTAACAACACTAGGTAAATTCGG 2664453 24 100.0 43 ........................ CTCATTAACCTGAGTTCGTTTTCGATTTTTTCAAGCTCATTTT 2664386 24 100.0 40 ........................ CTAAGTATATCCTAGCCCCACTGAAGTGATTTGAAAGAGA 2664322 24 100.0 45 ........................ AATTAAACATGAAAGTGAGAAACAGAGTATTGGTTTCAAGCCTAG 2664253 24 100.0 42 ........................ AATACAAAAATATTCATAGATGAAGCTGACTACTTTTTATTA 2664187 24 100.0 43 ........................ AGAATCTTCTCGACGTATCGTCTATATTACGTTACCTACCCAT 2664120 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 48 24 99.7 41 GATAATCCTTAATGGAATTGAAAG # Left flank : AAGTAAGTTTCCAAATTGAGGATTTTAGGACTGCAGCTGAGGGATTGAGCAGCGAACTCTTGAAGGTTTTGAGTACAGTCGTAGCCAATCCTGGGATAAGACATGAAGTAATAGCTGAGATGACTGGGAAGAAACTTAAAACTACTATGAATGTAGTAGGGATATTAAAAAAGAAAAGACTAGTTTATCAGAAGGGTAGAGGAGATGGAATTTATCCTACGAAGCTTGGGATATTGATAAGTAAATTAAATCAAGAAAATAATAGAAAATAAATAAAATAGCTTTGTTTTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTTTAGTTGATCAATAAGAGTGTCTTTGTAAAGAATGTTGAATGTATTTCTCTTTTTAGAATTCCCGTTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAAAGAAAAGCTTATATAGCAGAAACGAAGAAAATAACATAAGAACTAATATAAAAACAATCA # Right flank : AAGCTACCGCAATATCATGTCCAAGTTAATGCTACAGAAATAATATACAAAGAAAAATTAGTTTCACCTTCATGGTATACCTCCTTATGGATCCCGTTTTTGGCCTTAGGTTTAGCACTACTTGGTGCTTTTGTCACATTATTAGTAAGATCTAAATCTGACCATCAATTGGGATTGCATATGTTGTACTAACATTCGGCCCGGGAACTCAAGGAGTCCAATACTACTAGTGAATAAATTTTTAAAAACCAATTTTCTTTTTTCCTTTAAATGAGGAAAAAATTAGTTTCAGTTTTAATGATAGTGACAGCTGTAGTCTTTCTCGGACTGTCATTCTATCTACATTCTATAGATCATCCTATAACTAAGCTAAATGTGGCTCAACAAGCACCTAGTATACCTCTAAGGATAAATCAAACATTTACTATACCTCTTTATATAGTCTATACGCCTATTATTAGTAACTATACGGCGTCTATTTATAAGATTAAACCAAAACC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 5 2678043-2671254 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 2678042 24 100.0 42 ........................ TTTATCCATCTGTCAAATATCTTGATTTCATAGTTATTGGCA 2677976 24 100.0 37 ........................ TCTTCCCGTCTAGCTTTAATACGTCTTTATATTTTAA 2677915 24 100.0 41 ........................ CGTATATCTTTCATCCCCTACGATTTTCGCCCTCAAAATTA 2677850 24 100.0 45 ........................ AAAACATTATTGTCATAGGAATTTTGCGGCAGAATATCTACTTAA 2677781 24 100.0 42 ........................ TTATCTTCAATTGTTGGGGTTATGGTTTGTGTCCCAATTTGA 2677715 24 100.0 41 ........................ TTCAGCGGTGAAATATAAGCCTTAAACCTGAACCTTTCCCT 2677650 24 100.0 42 ........................ TAATGAAATATGCTAAAGATCTAAATTATGATTATGCTATCT 2677584 24 100.0 45 ........................ CATTTTATATTATACAACCATATTTTTCCTTCTAAATCAAGCTCT 2677515 24 100.0 42 ........................ TAACTATATGAACCTCCCCAACCTCGAGATACTCCTCCTTGT 2677449 24 100.0 40 ........................ TTCAACGTCTTTGTCAGAACCAGATCACAATATACCCCGT 2677385 24 100.0 43 ........................ TGATAATTCTTGTGTATACCCAACTGCCCTAATAAAATGAACG 2677318 24 100.0 40 ........................ CTCTGAAGATGAACTTGTTAAGGAACTCCTCAAACTGGTT 2677254 24 100.0 39 ........................ TAAAATTTCCGCTTTTTTCTCCTTTCTCCTTTGGATTTC 2677191 24 100.0 41 ........................ ACGCTTTAGAGAGGATTCAGGACGCTATAGATAACGACTAT 2677126 24 95.8 39 A....................... TGGAGTAGTTTATGCTACTTATTATGATGAGTTACCGAT 2677063 24 100.0 46 ........................ ACAGTATTGCTTACGCAAAGCGAAATGTTACGTCGACAGGACTGTA 2676993 24 100.0 40 ........................ ACAGTTTGTCTTACCTTGATTATTGCTTTCTCCTTGAACA 2676929 24 100.0 41 ........................ CTACAAAATTCGTCAATCTTAGCAAACTCTTCCGGATAGAG 2676864 24 100.0 43 ........................ TAGGCAATTTTTCTAATGATTTAACAACCTTTACTTCAACTTT 2676797 24 100.0 41 ........................ ACTCGTGCAAGCTGACCGTATTTATCATAACACAATGCAGA 2676732 24 100.0 39 ........................ TATTTCGTTAAAGCAAACCCTGACCTCGCGATACCTGTG 2676669 24 100.0 39 ........................ ATGATCTGGTGACTCGATTATGATACTCATTAGTTTTGG 2676606 24 100.0 41 ........................ AACTCAAAGTAGTATTCGTAAATGTCACTTCTTTGGTTTAT 2676541 24 100.0 42 ........................ CAGGTCCTTCAGGAAGCTAATGAAGGTGCTATACTCGGTGCT 2676475 24 100.0 41 ........................ TTTATGGAAATTTTGAAGATTGCAAATATGAAATATGAACA 2676410 24 100.0 43 ........................ TTTTACATTACCGCAAACGGGGGTAGCGGTGCACCGCCTTTAA 2676343 24 100.0 44 ........................ TCTGTAATTATGCCTTGCTCTAACAGTTTCTGTTTAAGCGAGGG 2676275 24 100.0 40 ........................ ATCAGTATGATGAACGATCACTGCATATCCTTCGCTGGCT 2676211 24 100.0 38 ........................ ACAATTCTGATAAAGAGCATGGTTCTTCTAGTGCAGAA 2676149 24 100.0 42 ........................ CGTATTGTTAACGATTTCGGAAAGCTCAGGGTGGTTCTCCAA 2676083 24 100.0 43 ........................ ATATATTTAGTATGATAGAAATCCTCAAATTGGAAAATTTTTA 2676016 24 100.0 40 ........................ AACTCCAGAAGCAAAAGTACTATCTCTTCTCTATAATAGA 2675952 24 100.0 43 ........................ TTACGCTCATCACATGTCTGAACTTGACCCAGCAGCCCGCGAT 2675885 24 100.0 39 ........................ TTGATTGTAATAATAATCACGGATACTTTGAGTAATAGT 2675822 24 100.0 41 ........................ AAGTAAGATGATATAAATGGCAGCTACAGCAGAAATATGTA 2675757 24 100.0 36 ........................ AGATGGCAAAAGAGAGTTGTACTAGTACCAGAGCAA 2675697 24 100.0 44 ........................ GAAATGGCTCTAGAGAAGGCTAAAGAAGAATATCAACATGAGAT 2675629 24 100.0 43 ........................ CAAGATATGCAAAAATTATTTAATTCTTCTAGTAATCAGTCTC 2675562 24 100.0 41 ........................ TTCTCCTAAACGTATTACATCATGCATTCTAACCTCACCAG 2675497 24 100.0 40 ........................ CTATTAAACTGGGGAGTTTAACATCACGCTCAGGGCAGTT 2675433 24 100.0 43 ........................ GTTAATTTAGATCCTTCTGACGCTTTCCCATCATCAGTAGTAG 2675366 24 100.0 46 ........................ AGTTAACTGGGAAGTAAAAACTAGGTCATATCATTAAACTGAGGTC 2675296 24 100.0 41 ........................ ATCATAACCCGGTGGTATAGTCTCCTTCCTGGTGCTATTTT 2675231 24 100.0 42 ........................ AGAATCAGTTAAGGTGCCGACAAGCGGGGATACGTATAAAGT 2675165 24 100.0 40 ........................ CATTGTATTTTCTTTAAGGAACAGAGGCTCACTTGACTAT 2675101 24 100.0 43 ........................ ATTGTAACACACATAAACTGGAAAGGTCTATCGTAATCAGAAG 2675034 24 100.0 40 ........................ TAAGTTGTTGGAGGTGGGCTAAGATGAGTAAGCTGGCAGA 2674970 24 100.0 39 ........................ CTCACTGCCGACAGCACAAAGAGCATATATAAATAATCG 2674907 24 100.0 40 ........................ CTTTATTAATTCTATTTGGCGTTTTGTCGCTTTCATGTCA 2674843 24 100.0 41 ........................ GTTGTATATCGTATTTCTCTGTTATTTCGTCTAAGTTTCTA 2674778 24 100.0 40 ........................ CCAATATGCCCCGCTACGGCGTATATCATGTGGAGATAAT 2674714 24 100.0 41 ........................ TGTTTGGATTTATAGCATACACTAGCTGTTCTAATAAGTCA 2674649 24 100.0 43 ........................ CCATTTTTGTCACGTCTTTCTGAGCCAAAATTACGTTAAAAAT 2674582 24 100.0 41 ........................ TTAGAGTTATACATACCGTCCATGCAAAGTTCAAAACGATA 2674517 24 100.0 39 ........................ ATCTATTTTTTTGTTAATATCGGAATGATTTATCGTGTC 2674454 24 100.0 38 ........................ GTCTTCTTCCTTTTGGTCTAGTGAAGGATCATAATTAT 2674392 24 100.0 39 ........................ AGAAACTAGAAGAGATCGCAAAGAGAGAGAACACAACAA 2674329 24 100.0 40 ........................ GGAACAAATGAACCTACCACAGCACCCGTTAGTGCACCAG 2674265 24 100.0 39 ........................ TTAAGAGAGCTGACTGCTGCTAAGTACTGCTGAGGGGTG 2674202 24 100.0 36 ........................ TTTATTATTTTGTAAATTGGGATATCGTTAAGTGTA 2674142 24 100.0 41 ........................ TTCTATTATGCCTTACCGTTTCCACCATCTAGAAAAATAGA 2674077 24 100.0 45 ........................ TATAACTATAAGGGCAATAATAACTGTAGCTATAATAAGTATTAA 2674008 24 100.0 38 ........................ GTAGTACTGGTATACTCATAAGTATTACCGTAAACATT 2673946 24 100.0 41 ........................ AGCCTTGTAAGCGCTACCCTCAGATACCTCATCCTCATATT 2673881 24 100.0 41 ........................ GTTATAACAGTGTTTGATAGGGCAAGGACTAGAGAAAGGAA 2673816 24 100.0 41 ........................ CTTTTTCTTTTATAAAAGAACAAACTTCTTCATAACTCATT 2673751 24 100.0 37 ........................ AACTTTAGCTATCCTCAATTACAAATTCCACAGATGA 2673690 24 100.0 41 ........................ AAAACTAATAATTAAGGTATACTTCTAAACTTTTTAATCTT 2673625 24 100.0 40 ........................ AATGTAATGTAATACTTTACTGCATCTTCCCTATTTGCAA 2673561 24 100.0 39 ........................ ACATCATCTAATGCCACTTCTTGGACGCAATCATTATAT 2673498 24 100.0 38 ........................ TTTTCTTCTTGAGTCTCTTTTCTATCTGGTCTAAGCGT 2673436 24 100.0 39 ........................ CTTATACGTGCAATGGCTTAGGCAAAATTACTGACTCCC 2673373 24 100.0 38 ........................ TTTATTACAACACTATACCAATTAGAAGAAGCATTCGC 2673311 24 100.0 45 ........................ TAACGCTCTTCCCTCCCTGTAGAGTTTTTCTACAAAATAAGCAGA 2673242 24 100.0 40 ........................ TTGAGTTTATTAATATCTATGTTAGAAGAATTAGAAGAAT 2673178 24 100.0 41 ........................ TTACTTTCCATAAGTTTGGCAATATTAATATATCTTAATGT 2673113 24 100.0 47 ........................ CAAATTTAGCATCTGGAAATTCTGATAAAAAAATAGACTTTATCTTA 2673042 24 100.0 40 ........................ TTTTTATAACAATTACAATACCGTTAAGCCCGCTCCTCTT 2672978 24 100.0 43 ........................ ACTACTAAATCTTAAAACTTTTAAAAAAAGGATAACATCTTCC 2672911 24 100.0 42 ........................ ATCTATAGACTGACAAGCTTTAAGATTCTACAATTATTCAAT 2672845 24 100.0 40 ........................ TCACGACTTCTGAGTAGTCATAATAACTTATTATTCTTAT 2672781 24 100.0 41 ........................ ACAATTGTTGAAAACTAGAAATCTAACAATCTTTATTCTAT 2672716 24 100.0 42 ........................ TTTAGAATTAAAGAGAAAGATCCTTTAACATTAGCAATTAAT 2672650 24 100.0 38 ........................ GTCACTTGAAGACCAAACAACATAATAATAGAAGTTTG 2672588 24 100.0 47 ........................ TAATGGAAATTTTATGGTTAAATAGTAGTACAACAATACAAGTGGTA 2672517 24 100.0 36 ........................ TATAACCCTGATTGGACCTTGCATAATACTACCTGC 2672457 24 100.0 41 ........................ GGGTAAATAGAATACGCTAGTACTTATTAAAAAGCTCTCAC 2672392 24 100.0 44 ........................ TTTTGATACCAAATGTTAACATCATAAGTCTCATCAACTTCTAT 2672324 24 100.0 43 ........................ TTTACATACATTACATATTGTGAATTCTGATTCGTAACGTAGA 2672257 24 100.0 45 ........................ GGGCACCTACTAATAGTCCTTCTTACTACGGTTCACCCGTCTACG 2672188 24 100.0 41 ........................ GTACATGTAAAAGAATATAATTCAGCTAATTCAATCTCTGG 2672123 24 100.0 41 ........................ TTGATCCTCATTTTTATGAAACGTATGCAGCATGCAAGATG 2672058 24 100.0 42 ........................ TTGCATCAACGCCATCGCCCCAGGTATCGTGGGCACTTGCGT 2671992 24 100.0 40 ........................ TGAAATTGATTATGAGTACGGAAAATCTACGATAGTGTAC 2671928 24 100.0 39 ........................ AGACTACGTCAAAACTTATTAACAAACACAAATGAGTTA 2671865 24 100.0 43 ........................ CACAGTATTCGCAGTAAGTCTCTCTGATTACTTCCACGACCCA 2671798 24 100.0 42 ........................ TTAATTGTAGAAGAAAATTCCAAAAATTGTAATAGTTGTAAC 2671732 24 100.0 43 ........................ TGTTTGCTTACCCTGGACTAACCTAGCTATTCTCTGCAGCTTT 2671665 24 100.0 41 ........................ ACACCCGACGAGAGGGGTTCCAGATAAATCGTAAGCACTTT 2671600 24 100.0 39 ........................ AAACTCGTCCTCCTCAGGAAAGTTGTTAATGAAATCGAG 2671537 24 100.0 42 ........................ TATTAATTATATTTTAGGCATGTACAATTTAACTCAGTCTAG 2671471 24 100.0 41 ........................ TATGATGCCAAGCTTAAATTATACGAGATTCAATCACAAGT 2671406 24 100.0 40 ........................ ATGTTTCCTCATCAACGTTAGTACTTCTCTTTTACTGTAA 2671342 24 100.0 41 ........................ GAAACAACATCTATTTCTCTTACAGCTAAGTTTCTAAAAAT 2671277 24 79.2 0 .................A.T.TGC | ========== ====== ====== ====== ======================== =============================================== ================== 105 24 99.8 41 GCTAATCCATAATGGAATTGAAAG # Left flank : TTCTAATCACTCTTCAGAAAATAAAAAGATTATAATTTTTCTATATTTTATTTTGTTAATCTTTTTATTTTCTTGGATTTTAGGCTCATTAATTTTTGTTAAATTTAAGCGTTAATTTAAAAGTAAAATCTGTGGTTAGTCACGATAAGAATTCCAATAATTCCCAATATATACATATATTTAATCTTTTACTATAAATATACGATTTATTGACGATCTTCTTTAATTCAAGACCAACTGAGATATTAATGCTTAGATGTTCTATTAAATTTTGAGTATATCTTTGTTTTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAGTGATCAATAAGAGTATCTTTGTAAAGAACGTTGAATGTATTTCTCTTTTTAGAATTCCCGTTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAAAGAAAAGCTTATATAGCAGAAACGAAGAAAACAATAATAGTAATAGTATAAAAATCTGCA # Right flank : ATAAATAAAAGCTCCAATAAACAAAAGATTCTGAATAAGGAAAATTATCTCAATGGTTATCTATTATTTTACTATGTTTTCTAAAATTATATACTTCTTAGTTAATATCCATTATTTTCTCTATGTTATTAACTCTTGATTTTCTATGGTAGAATAAACATAGAAAGATTATCATAAATACTTCTAGCCTTTATGAAATTATTTTCACATAAGTAATGCAAAGTTTTAAGGTCCATATAATAGATTACAAACTCGAATATATGTACTGTAAAGGCTAGGGATGGGCTTTCAAAAACATTCATAGTGAATGTTAATAAGCCAAGATAGGTGAGTTACTCAAAATTAAAACGATTAACACTCATAGAAAAATTAATTTCATAATTTATATAAACATTTCTGCAAATACTTGTTAATCTTAAGAAATGAGAGAGGTGTTTTAGGATAGAAGAACTAGCTTTAAAGCAAAATATTTTTGACTACTCACTCTGTAATTCTTCAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCCATAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 6 2692870-2684986 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================================== ================== 2692869 24 100.0 44 ........................ AACTTTTACGAGAGGAGTTAGGGAAAATCCCCTAATATGATATT 2692801 24 100.0 38 ........................ ACAATAAGGTAGGCCCTTATCATCTTAGCTTTCTGTAG 2692739 24 100.0 40 ........................ AAGTTTAAAAATATTTCAGAGTTTGTCTACCTCAAGAAAG 2692675 24 100.0 40 ........................ GGAACTGGCGGTCAAACGTCAACTAGCTCCGGAACTGGTG 2692611 24 100.0 39 ........................ TCATACATCTTAATTTTAATGTCAAGACTACTGACATAA 2692548 24 100.0 38 ........................ GGGCCAACCAAAATTGTTATAAAACCTGAGGAGGCTGA 2692486 24 100.0 41 ........................ TTGGTAGAGCAGTTCGAGGAGTGTCTAGGCTTTTCGCTGGG 2692421 24 100.0 43 ........................ TTTTCTGTAATTTTGAATATCTTTTTTTTACTTCCTACCTCTG 2692354 24 100.0 39 ........................ GCTTTCCAATTCAGCAGCACTCCTCAACAACTGTGTTAT 2692291 24 100.0 41 ........................ TTTCTTGGAAACGTTAGCGGTAGAGGGTTTGCTAGAACCGG 2692226 24 100.0 41 ........................ ACTGCAACCCAGAATAGAGTGCTTCCAGATATTCCTCCACC 2692161 24 100.0 42 ........................ AAAAATAAGGTAACTTATCATGGCTGAGGTAAAGCCCTATCA 2692095 24 100.0 40 ........................ TGAGCAAGAAGGGGAAACTATCAAAGTACTTAGCTATTTC 2692031 24 100.0 42 ........................ AAAGGGCAGAAGAGGAAGTTCGAAATCTATTACGGTTTTGCG 2691965 24 100.0 41 ........................ AACAGCTCTTGATGATGGTAATGAAAGTGTCATCTGGTCAG 2691900 24 100.0 39 ........................ CTTTTTATTATTACGTGGAGGAATCTATGACGAGATCGT 2691837 24 100.0 43 ........................ TTAACAATATTTACTAAACTATCTAAGTCCTTCAGCTCTTTCA 2691770 24 100.0 38 ........................ CAAATACACTGTCCCGGAAACTGCTGAAATATTAACGA 2691708 24 100.0 44 ........................ CAAGAATTCCGAGAGTGCCCGTCTTATGACGACAGACCTCTCGA 2691640 24 100.0 39 ........................ AACTCCTTTTCTTCATATCCCTCACCTCATTAGGCTATT 2691577 24 100.0 40 ........................ ACATAATCCTTAGACGGTCTCCAGTCAGAAAAAATTAAAC 2691513 24 100.0 41 ........................ GACTCTAGAAACGTTTGAATTTGTTGCTTAAATGGAATTAA 2691448 24 100.0 39 ........................ AAACTTAGCATTTGTGTCGCAAAGAACTTTCTGATATAC 2691385 24 100.0 42 ........................ CTGCAAAATTCGTCAATCTTAGCAAACTCTTCCGGGTATAGA 2691319 24 100.0 39 ........................ TTTTCGTCGTCAGTATCACTAAAGCAACACATTAGATAT 2691256 24 100.0 38 ........................ ATATCACTCGATGAAGTTTTGACAAACGATAAAATAGA 2691194 24 100.0 40 ........................ ACAACAAATATCATAGAATATCTCTCTTTTTTTGTCAGAT 2691130 24 100.0 43 ........................ AGTCTAAAATAAGCGGGATTATCAATTGAGACACTGTACCTAA 2691063 24 100.0 45 ........................ TGCTTTCTCAATACTGCTATTATTTCCCTCTTAGTGTACCCGCTC 2690994 24 100.0 41 ........................ TCATTACAATCACCAGCATACCTTGAGGGTGACGTGTTTGA 2690929 24 100.0 42 ........................ CTTGACCATAGCGGTTTGTTAATTGATGAAGTCAAGGGAACA 2690863 24 100.0 44 ........................ CGTTTCTCTCATTCATTTCTGCTAATTTTCTCTGATGATAATTA 2690795 24 100.0 39 ........................ TTATGAGTATCACATTGGTAAATAGATCATTTTGGTTGT 2690732 24 100.0 39 ........................ ATTTAGGCCACGCTGAGAGATTAAGTATTTGAGCATTTA 2690669 24 100.0 40 ........................ CCAAGTTGTCTAGTAAGTATCCTAGCACCTATTACAGCGA 2690605 24 100.0 41 ........................ TTTTAACCCCTCTAAATGCCACCTCGCATATAAGCCTGGAT 2690540 24 100.0 42 ........................ TACATTTGCTGGTGTTATGAACATTGTTGGGCTTAACCCGTT 2690474 24 100.0 41 ........................ AGTATAGGATTTCTTGCCATCACTACTTCTTTTATGAACAG 2690409 24 100.0 37 ........................ ACTACTATAAAGATGATTATTATAAGACTTTTTTCCA 2690348 24 100.0 40 ........................ AAGTTAAGGTATCTTTACGTGGGTCCTTTAGAGAAGATAG 2690284 24 100.0 40 ........................ ATACTTGATTAAGTTCGTCTAAATTTCTGCAGAATTCCTT 2690220 24 100.0 42 ........................ ATAGTCCAAATTACTTCCCAACCGTCATTTTTCAGTTTTTCA 2690154 24 100.0 45 ........................ ACATGATTTATAACTACAACTTTAAGATATTGGATTTTATATTCA 2690085 24 100.0 41 ........................ AGGCTTAACGATATTTTCTTGAAGTACTCAGATAAGCTGAA 2690020 24 100.0 42 ........................ TCATTATAACCAATTGTTATACAATTGTTACAGAAAATGTTT 2689954 24 100.0 40 ........................ CTTTTCGCTTTCACTTCAATTCTGTTCTTCTGAAGAGAAA 2689890 24 100.0 40 ........................ TATTGCTTGGTGCAAAATAGTACCCTAGAAATCCAGCTAC 2689826 24 100.0 42 ........................ GGTAAGCATAAGTATCAGAATCATAACTCTCAACTATCTCCA 2689760 24 100.0 44 ........................ ATCATGCTCTTTTGCCCTTTTTCTGATTATTATGTATTATGTAT 2689692 24 100.0 45 ........................ TGATCTTCTTTTCGTCTATAGGTTCAATGGCGAAAGCATCAATAA 2689623 24 100.0 44 ........................ CGAATACGACAGGCACTTTACTACCGATCTGTCTATCTAACACT 2689555 24 100.0 46 ........................ TTAATAAGACTATTTCTTAAGTCAGTTTTTTCTAACTAATTTTTTG 2689485 24 100.0 37 ........................ ATAAAGTGAGAGAATATTTCCTACTATTCCAGCGATA 2689424 24 100.0 53 ........................ ATTGAGAAATTTGTACAATATTCTTTTATACCAAGTGAATATAAAAACAATCA 2689347 24 100.0 43 ........................ TACACATTTACCCTCACTGAGTCAAAACTATATTTCCACTCCT 2689280 24 100.0 42 ........................ TACATATTATTTCTCGCGTCATAGATGAGATTTGCATAAGTT 2689214 24 100.0 43 ........................ ATCTCACTTTGTCAGACGTTACGACGTCTACGAAACATTCCCA 2689147 24 100.0 37 ........................ CTCTTGATTCATATTCCGATATTCCGTTGAGTGATAG 2689086 24 100.0 39 ........................ CTCTTGACCACGTCTGTAAGAAGCATAATATCTGCGTGT 2689023 24 100.0 42 ........................ GAAAGAAATAGATGTAACTGTATATCCTAATGTCCACGTTCC 2688957 24 100.0 40 ........................ TTCTCTGTTAATTCTACATAGATTTTCTTTCCTTCTCTAA 2688893 24 100.0 37 ........................ AAAAGCCTGAGTGATGCGGTAAAAAGACCAGGTCGTG 2688832 24 100.0 39 ........................ TTATATCTTTATATAAAGATGGTGTAAAAGTAGGAAACC 2688769 24 100.0 40 ........................ GACAAAGTTACCTTAAGGACAGAGTTCAAAATACTGACAT 2688705 24 100.0 40 ........................ TAGTGTAATGTTTTAAGCCACGTTTACTACGTGACGGTAT 2688641 24 100.0 42 ........................ CTTTGTCCTCCCCTGCAGAATCAATATTTCCCCAGTCTTCCT 2688575 24 100.0 43 ........................ TTCTAGCGAGTATTCTATGTGCCTCGTCTATTACAACGATTTT 2688508 24 100.0 43 ........................ CTATCCCCCCGTCTAAATTTTCTTCTGACGGGGAGGAAGTATA 2688441 24 100.0 41 ........................ CTATGAAGTCCCAAACTGTCGTATACGTAGAAGAACGATTT 2688376 24 100.0 40 ........................ TTCTTTATTGAGAGAATAAATGAACTGGTAGTAGATCAAG 2688312 24 100.0 40 ........................ ATCCCCATCAGAAGGGGCTGAATTTTGTAACACCTATAGG 2688248 24 100.0 41 ........................ ATCACAGCTATCAAAATGATTACTAAAACAATTACTATAAT 2688183 24 100.0 43 ........................ TTCAGATTTGTAGTTGATTTGTCAGTACTTGACTTGATAGAAA 2688116 24 100.0 41 ........................ TTTTTTATTTTCATACAACCACTAAATGTTAATCCAGACCG 2688051 24 100.0 43 ........................ ATAGTTTTTCCCTTAATTTATTATTGAACTATGTAATATCCCA 2687984 24 100.0 39 ........................ ATTATTGTTGATGATAATCTCAGCGTGGTGCCACATTCC 2687921 24 100.0 39 ........................ TTAACCCGTTATACTCGTTTAACAGTTCTTCATATTTCT 2687858 24 100.0 36 ........................ AATTTTTTCACATGCCATGTGTTTCAAAGAGTATAA 2687798 24 100.0 41 ........................ GTTTTGTTACGCCATTTGTAACTTCAATATTTCCGTATACA 2687733 24 100.0 41 ........................ GTACTTCCTAGCCTCACTTAAGATATCGTCTATCACGCTAA 2687668 24 100.0 42 ........................ GTTTCTCCATTTTTGCTCTATGTACGATATACGCATTACAAA 2687602 24 100.0 41 ........................ CGGTATCGGTGAAGGGAGGAGGAGACAGCAAATCAATACGG 2687537 24 100.0 40 ........................ TCAGAAATTGAAGGATAGAAATTTAAAAGCCCACTCCTAA 2687473 24 100.0 39 ........................ TTTATTATTACCTTATCCACGTTCTCTTTAGTTGAGTAA 2687410 24 100.0 40 ........................ TTTTTCAACACCTCTGTTATTTCATAACTAGAACTTTCTA 2687346 24 100.0 39 ........................ TTTTGGTACCAGTCTCTATTTATAATGAGTTCAAAAAAA 2687283 24 100.0 40 ........................ TCACCTGGTGTGACAAAGATGTCATATACTTTTACATTTT 2687219 24 100.0 41 ........................ CTTCCTCCTTTCCCGCCTCCAAAGCTAAAGCCTCCGCCTGT 2687154 24 100.0 42 ........................ TCTATAAATAACGAAATAATTTTAAACGCTTAGAAAAATAAA 2687088 24 100.0 40 ........................ TGCTATATGAGATTAGAGATTATGTGGATCACGCAATAGA 2687024 24 100.0 41 ........................ TGACGGAACGACCTTTGACACCAGCAAACGTTTTCAGATGT 2686959 23 95.8 42 ..-..................... ATATTCTCAATTTCTTAAGTATTGCCAGATAAGAAAAATATT 2686894 24 100.0 43 ........................ ATTCTTGAATCTTCTAGGTTTCCAAAATTCCCGCCAAGGGATT 2686827 24 100.0 41 ........................ ACTAGATATATCATCAACAAACGGCACAGTAGCACTCATTG 2686762 24 100.0 42 ........................ TAGCAATTATTAAGCCCCTTTCAGTTACGTAGAGCTTTTTTA 2686696 24 100.0 40 ........................ TACCTACTAACTGACTTAACTAACTTACCTAAACCTCCTG 2686632 24 100.0 40 ........................ TTAATTGCAGCATTATGGACGTTTGAGTGGACTAGAGGGA 2686568 24 100.0 40 ........................ GTTTTACAGTCGCAACATAGTACTTATTCTTCATATAACG 2686504 24 100.0 40 ........................ ATAAACGTAACTGTTCCCCTGGATTCAGTTTCGTTAAGAA 2686440 24 100.0 41 ........................ AATGTAATTGAGACGCTTAGGCAATTTGATAGCGTATTTTT 2686375 24 100.0 40 ........................ TTAGCTAAACTGATGTTGAATAGTTCTTATGGAAAATTTG 2686311 24 100.0 38 ........................ AACCCCAAACCCGTATCTGTACTTCAACACATACCCAA 2686249 24 100.0 40 ........................ CGTTCTGAACCAAAACGTGTCGTTGCCCAGAAAGTCCCGT 2686185 24 100.0 42 ........................ TACGGAGGGGAACGTAGACGTTAGGATATATTCCTATATTTA 2686119 24 100.0 41 ........................ TGACCTAGACGGCACGGTTTTTGACACGAATAAAAGATTCG 2686054 24 100.0 40 ........................ AATAGGGTGAGGTGTATGATAAAACAAAAAAGTGTTAAAG 2685990 24 100.0 44 ........................ ACAGATTCTGAGGATTATGATGGTGGTTGGATCCTTTTTGGTGA 2685922 24 100.0 40 ........................ CGAAGTAGCTCCTCAACGACTTTTGAATCGGGGACTAACT 2685858 24 100.0 47 ........................ ATATTTAATATTATACGGCGAATCGAACACGGGGAAGTCCACCCTCA 2685787 24 100.0 32 ........................ TCTTCCAATACTGCAAAATCCTTGTACTTCCC Deletion [2685732] 2685731 23 83.3 38 T........G..-..........A TTATTAAATGGTAATACTGCAAAATCCTTGTACTTCCC A,A [2685711,2685725] 2685668 23 83.3 49 T........G..-..........A TTATTAAATGGTAATACTGCAAAATCCTTGTACTTCTTTTCTTTCTTTA A,A [2685648,2685662] 2685594 24 100.0 42 ........................ TTAGATCATAGCGGTTTGTTAATCGATGAAGTCAAAGGAACA 2685528 24 100.0 42 ........................ CAGCAACAATATCTGCTACGAGTACTATAACAACTAACACTA 2685462 24 100.0 42 ........................ TCGCAGTTACCATATAAGTTCAACCAAATCTATAAGCATGTT 2685396 24 100.0 39 ........................ CTTACTATATAAAGAGCATTCTTGTCACTAGGATAAGGA 2685333 24 100.0 42 ........................ CTTACTGCATACATAGCATTTTCATTACCATTAATATTCAAC 2685267 24 100.0 37 ........................ AATTTGATAATGATAGGCTTTATCTCGGGATTTTTAC 2685206 24 100.0 42 ........................ GTATAATTTCCGTCACTATGTGCTGTACTAGTAATTGAAAAT 2685140 24 100.0 40 ........................ AAATCAATGCTAGTGGCATTTGTAAATAGTATATTGTCCC 2685076 24 95.8 43 .........C.............. CTTAGAGCATTAACGTCATTAGCCTAAGTCGCAGTAGTGTAAG 2685009 24 79.2 0 ....T....CG...A.....G... | ========== ====== ====== ====== ======================== ===================================================== ================== 122 24 99.5 41 GATAATCCTTAATGGAATTGAAAG # Left flank : ACGTCATGTACCCGGTAGTTTATTCAAGGGAGAAAACTCCCTTAAACGAGGCTTACTTAAAGGGGATACAATATATTAGAAAGCGTTTGATATAATATTACAAATATTTATCGAATTTCATGACTGCATGAGAACAGTCCCATTTAAGTGCATTTCTTGGTTTTACAAAGTTAAATAAAATAGAGAGTGTATGTTCTATTAAATTTTGAGTATATCTTTGTTTTTATTCCCGTTTTTTATCGGGAGTTTCTTTCAATTTTTAGTTGATCAATAAGAGTATCTTTGTAAAGAACGTTGAATGTATTTCTCTTTTTAGAATTCCCGTTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGCAGAAACCATAACGTTTGTGCGAAACATATGCATTCGGTAATTTTAACAGAGAAAAGCTTATATAGCAGAAACGAAGAAAATAACATAAGAACTAATATAAAAACAATCA # Right flank : ATAAAGTTATTAGGTCTCAGAGGTTTCTGATTAACTTTTTATCTTAACCACAACTTCCCCAAGGCCTATTCCCCTACTCTTCCCTATCCCTAAATAGGAAGCTATAATTAAATACTTCGAAATAGCTTTCTTAAGCTTCTTATACGGAATATCAAATTCCATCCACCCTACAAAACCTCTCGAAGTCCTTAATCTCCCCTTATTGTCATTTCCTATGACTACAGTCAAGGGTTTAAGTTTATACCCTATAACTCTAGATAAACTATTACTCAAAACCCCGAGCCTAAAGGATTTTGAATCAAGCTCCATATTACTGGTATTTCCATATAAAGCCCTATAAACCCTATAAGCATAACTCACTACTAAACCTACAGAGGGGATTAAACTATACCCCGGATTAACGTTCTTATATTTCTCTTTCAACGACGGAGGAAGAAGGACTTTTGAAGAAAGGAGAGCCGGGGTCACGAATTTTACATAAAAATTACCCTCACTAACCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 7 2694294-2694448 **** Predicted by CRISPRDetect 2.4 *** >NC_003106.2 Sulfurisphaera tokodaii str. 7, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 2694294 24 100.0 40 ........................ CGAAAAAGGTAGAAAATTATTACAGGTTCTTAAGGATATA 2694358 24 100.0 43 ........................ TCACGCTCTTTCAACTCTGCTAGTAATTTTGCTCATGAAACTG 2694425 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 3 24 100.0 42 CTTTATTCATAATGCTAATTCCGT # Left flank : AAGATAAAGAACGTTAGAAATTCTATCAAAAAAATATTTATAGAAAATATATAATTTATTATTCTTAACTTATTTTTAATTATAGTCTTTTTCATAATAGTTTCAAGGGACAAGTTTTATCTTAAGATATTAAAAGCAGGTTAAACAATCGATGCCATACTTTGTATCGATAAATATCATTTATCCTTTGCATTTACTATGAAAAAGACTATAATACTCATTCTGAGAGACGATAGGAGCTTAAAGATTCACATTGGTAATATCATTTTCTTATTATTTATAGAATAGATTTTATATTCAAGTAGAGTAGAGATGAGTAGATAAATTTTGAGTAAAAGATATGTAGTTCTAGAGAGACATAACAAGTGCAGACAATTCTAGGTTTTTAATAAAACAGCTTTTGAGACTAAATAATTCTAAAATAAAGTCTTTAGTTGATTATCTTATCATTTGAGATTATCGTTGAACGATCTCAAATAAATTACTACTGTTTCTGATCC # Right flank : AAAAGTCACTAGATAGTCCACATTAGATTTTATGATTTGGAATCGTGGAGTAACTCAAAGATACTCGTTTCTATGTTTTAGACTGTAAGATTTCTCCGACAAGAATTTTACTGTAATTTTAATGTCTCCATATCCCTAATGCTACATCGACCAGTGATAGTGTATCCAGTAGTGCTGTAATTTTAATGTCTCCATATCTACGATCACCATAGTCTATTAATAACTGTAATTTTGTTTTCAAATAAATTATAAAATTCCCTAATTTACTATAAATGGAAACTTACAGAGTGTTTTGATTAAGCGAAGCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATTCATAATGCTAATTCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //