Array 1 144770-143461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAP010000006.1 Enterococcus faecalis strain PF110 PF110_NODE_6_length_215511_cov_410.896479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 144769 37 97.3 29 ....................................C ACCTTTTGGCGTTGCATTGGGACGTCTCC 144703 37 100.0 29 ..................................... ACAACGCACGAGAGCGTGTAAAAGACTTA 144637 37 97.3 29 ....................................C AGGTGAAATATCATAGTTTACCTTCCTGT 144571 37 100.0 29 ..................................... TCTTAATCTTCATCGCTTTCACCTAATGT 144505 37 100.0 29 ..................................... CGATATAAGCATTTTGTATCGTCCAATGT 144439 37 100.0 29 ..................................... CTTTACCTTCTGTGAAAAATGGTTCCTGT 144373 37 94.6 29 .............................G......G AACAACGTATAAGTTCGTATGTAGGGCTT 144307 37 100.0 29 ..................................... GCGAATCTTTGGCATTCTATCACGAAGCT 144241 37 97.3 29 ....................................A GTTAGAGCCGCTTAGATTCTTAGAGAAGC 144175 37 97.3 29 ....................................A CGTGCAACATTATACGCTGCCGACTTATT 144109 37 97.3 29 ....................................G ACATGGTAGCGATGAACGATTGCAACAGA 144043 37 100.0 29 ..................................... AATACAACTTTCTCACCATCACGATAGTT 143977 37 97.3 29 ....................................A TCTTCACCATTGAAAGCACCTTCTTTGTA 143911 37 97.3 29 ....................................A AATGAAGTCAGAACGTGAACGACTTGAAA 143845 37 100.0 29 ..................................... TTTACAATATGAACAACGAATTAACCTAT 143779 37 97.3 29 ....................................G CAATATCTTGGTACGTCATTCAAGGTTGC 143713 37 100.0 29 ..................................... TGCGGTATTATTCGTAGGTTTGCTTTTTT 143647 35 81.1 114 ......................TT.--.CG......G ATATGAATGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [143615] 143497 37 67.6 0 A...........C...A....TT.CTT...G..T.GA | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 19 37 95.9 34 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTAACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGATACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTTCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATCCGCTCCCCGTTTCACCACAGGCATATTCGTAATAGCTAAAATGAAGAGGGCTAAGAAGAAAAGTGCCAGGATTCGGAAAGTAAACCATTCTTTAAAGAGTGTGTCTAATTGTAAACCACTTTCCAACAGAATAATTAAGGGCATATGCAAGAGATAAGGGTAAAGGGTATCTTTTCCTAGGGCGCTTAAAGGTAACTTTCGTTTCGGCAATAATGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 262363-262663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAP010000001.1 Enterococcus faecalis strain PF110 PF110_NODE_1_length_456178_cov_353.626017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 262363 37 100.0 29 ..................................... AATTGTTTATTGAAATCATTTCAGTATAT 262429 37 97.3 29 ....................................C CCACCATCAGCAAACATTTGCAAATTCAT 262495 37 97.3 29 ....................................T TCAATTATTAAACAATTTTCCATTAGAAA 262561 37 97.3 29 ....................G................ ATGGCCGTCACACCAATGCTGCACGATTA 262627 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 97.8 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACATTACAAGAAACCTGGGCAATGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATACTTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCTTGTTTTATAGTCATGTTGTTTAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAGCTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATACTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //