Array 1 29791-29566 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWPQ01000016.1 Clostridium sporogenes strain IFR 18/030 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 29790 29 100.0 37 ............................. TTTGATAATTGTACTTGCTATAATAGAACTATATTCC 29724 29 100.0 37 ............................. TTCTAATATGAAATGTACTCTTCTAAAGAATTGCTTT 29658 29 96.6 35 ...............G............. CAGAAAAGTAAAGTTAATAGTTTCCTTTGCCATTT 29594 29 86.2 0 ........T......G.......C....G | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 95.7 37 GTTGAACAATAACATAAGATGTATTTAAA # Left flank : AAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGCTATTCTTAGAAATAAGGAATGGCTATTTTGCTATGGTTGAACATTAACATGAGATGTATTTAAACAAATCTATATTTTCATTATAGAAAAACATTTAATCCGTTGAACAGTAGCATGAGATGTATTTAAATATTAAATACTCGCTTTTTACCATATCTGTCATGCTAGTTGAACATTAACATAGGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCTTTCATTATTGAGCATAGTATATATAATTAAGTTTTTTCCAAGTGAATTAAAGATAAAAACCTACTCTAGTTATTGAAACATAAGGCTTAGGATAGGTTTTTATTATGAGTTTTCAAAAAAGCAAAATTACCTGGAAAAACTTCTACAAAACCTTGTAAAATCAATGGGGATATAATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTCTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTACTGACTAAAATATTTTTCAAAATTAGTTTTAGTTTCAGATTATAATTTAGAGTATTATTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGGCTATATAAATTGTTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTTTTCTAAGTTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGTCTACATTAAATTTAATAATTTCAGCGTTTGTTATGAGAGACAATAATACCACTGCATTCTTTTCTAAAAGTTTGTTAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACGGTTATTTCATAGGGCTCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 28653-26136 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWPQ01000002.1 Clostridium sporogenes strain IFR 18/030 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 28652 29 100.0 37 ............................. AGGCAAATACGGTGTAAATGGGTGGTATAGAATAAAA 28586 29 100.0 37 ............................. TTCTCTGGACAATTATCGTCCGCAGGTTCAATTGCTT 28520 29 100.0 37 ............................. TCTTTATACCTTGCAAGGTGTGAACTATTTTCATAAA 28454 29 100.0 37 ............................. TCTTTATACCTTGCAAGGTGTGAACTATTTTCATAAA 28388 29 100.0 37 ............................. TCTGCTGTCATATCGCCTATTTTATTATAAGTCTTAA 28322 29 100.0 37 ............................. CCGACTCTATCACCTTCGGGAATCATTTCTATATCCT 28256 29 100.0 37 ............................. TTGATATTTGCAAAGATTGTTTCAATGAATTTTTCAA 28190 29 100.0 35 ............................. TATTACAACTCCCCTTATCCGTAAACTTCTTAATT 28126 29 100.0 37 ............................. ATGAATGAGGAAAGAATGAAATTGCAGGCTAAGAAGA 28060 29 100.0 33 ............................. GTAAGATTTGTCATATACATTTGAATTTAAAAA 27998 29 100.0 38 ............................. AAGAAGCTTATGATAAAGATATTGTTGCATGGACTAAA 27931 29 100.0 36 ............................. AGAAATAAACATATTTTTAGGCGACATAAGTTAAAG 27866 29 100.0 37 ............................. CAGCTTCAGCTTTAAATAGAACTTTAAGATATACATT 27800 29 100.0 37 ............................. CAGGATGTTCTAAAATCTATAAAAAAAGAAAATGAGG 27734 29 100.0 36 ............................. ACATATTTTCATTTCTGGTAATCGCTTTTGTATTTC 27669 29 100.0 37 ............................. ACAAATTTCATAAGATTTTCTGATTTCAACTTACAAA 27603 29 100.0 35 ............................. TATTCTTCTTCATATCTATCTAATGCAAATGTAGC 27539 29 100.0 37 ............................. ATGCTAATACAAGCAGTACCACAAATTATAAATTCAT 27473 29 100.0 37 ............................. GCGATAATATCAGCTGCAATAGCAATAATGTTAGCGT 27407 29 100.0 37 ............................. GAAGTGGCATTAATAACATACACATATAATCTAAAGT 27341 29 100.0 37 ............................. AATTGATGATATTGACAATGCACAAACTAATCCTAAA 27275 29 100.0 35 ............................. AGGATTATGAAAGAGAGTTTTTAAATAAACAAAAG 27211 29 100.0 36 ............................. CAGTAACTTTATATAAAGAGCTAAAAGAACAGTACA 27146 29 100.0 36 ............................. CAACAAATTCGTGACAAATTACAAACTTTAACAAAT 27081 29 100.0 37 ............................. ACAAAAATAGATTATTTGCAAAATGCTTATGGTATTG 27015 29 100.0 36 ............................. GAGGACATGCTTAAATTGCTAAAAAACTTATAAAGC 26950 29 100.0 37 ............................. GATTTAAACAATGTAACTACAGGCTCTATGTATATGT 26884 29 100.0 36 ............................. ATTATTAAGAATCTAATTTCCTTTTTCATTGTTAAT 26819 29 100.0 35 ............................. TTATAATGTGTAGTCAAGTAAGGGTCCACATACTG 26755 29 100.0 36 ............................. AGAATTTAAAAATATTATGGGAAAGGATATTTCTAA 26690 29 100.0 38 ............................. ATACCTTATATATATGTATATCATTTATATTTTTTTTA 26623 29 100.0 37 ............................. TAGGAAGTTTTAAGCGTAACGTATGGTTCTGGTTAAA 26557 29 100.0 36 ............................. AGGTAAGCGTGAGGTAAGTTGTGGGTATGAATGTGA 26492 29 100.0 37 ............................. GTTGTAATTCCTAGTATAAATAACACATAATCTCTTT 26426 29 96.6 36 .C........................... TCTAAAATAGAATGAGTAGGATTAAAAGGTTTATCA 26361 29 100.0 38 ............................. AGGATTGGCCTTAGGTATATTAGAAGATCTAGACAAAG 26294 29 100.0 36 ............................. TCAACTGAGTTTGCAGAACAGGAAGACGGAGTTAGA 26229 29 100.0 36 ............................. AACAGCAATAAAATAATTAAATTAGTAGAATTGAGA 26164 29 89.7 0 .............A......G..A..... | ========== ====== ====== ====== ============================= ====================================== ================== 39 29 99.6 36 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAAGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAAGATGTAGTTGGCATAGAAAAGAGTTTTGATGAATTATTTTTATAAGTAATTTTGCATTAAACCTAATTTTGAATTGAGTAGGCTTAAACTATTGATACCACTAGCTTTATTGCCAATAAAAAATAAATACTTAAACCGCTACTGAAGGTTCACTGCAAAATACGAAAAATATGATAAACTAAGCATTGCTATAAATACAGTAATATCAGTGCTTACAGACTTTTTAAATTTTAGG # Right flank : CATGTTTCATCTATCATTAAAGCATGCTCAACAATGGATTCTATATACTCAAATATTGAGAACCTAGTGGTATCAAAATCATAATATGTAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGCGAGAAAGGGTTCAATGTAGGCATTATCATAAGGACAATCCTTACCGCTGAAAGAGTGAATCATATTAATTTCTTTAAATATGCTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGATTACTGTAAAATTAATCAAGGTAGAAAGAAATCTGCCTTGATTTTATCTACTTCTATAAGTTTGTATATTCATCCTATGAAGGATTTTAAAATTTATTATAGAATACTTAGTGTAGTTAATGAATGAAATTGTACATAATCTAATAAATTTTTTAATAATAAATACATATTTTTTTATTTAGGAAAATAAACAGGGGGTTATACTAATGAAGATAATAGTTATTGGGCCTAGAGGGAAAATGGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 49525-49886 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWPQ01000010.1 Clostridium sporogenes strain IFR 18/030 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 49525 29 100.0 38 ............................. AAGGGTACATTGCCAACAACTACATCAAAATAATTATC 49592 29 100.0 38 ............................. AAGGCTTGAATCAAGTCAATAAGTGGGTTTAAGGCTCC 49659 29 100.0 38 ............................. ATTTTAGTTGATATTAATTCAGAACCTCATGTATTAGT 49726 29 96.6 36 ...........G................. GGCAGGGAGCTATTTTTTTCTTTTTAAATTTATTTA 49791 29 96.6 38 ....................G........ TATATTACTGGTACAGATATAAGGATTATTCCTAATAG 49858 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.3 38 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GGTCAAAGAGTTGAACAAGCTACATTTGTTTGTAAGAGATGTGGACATAAGATTAATGCTGATTACAATGCAGCTAGAAACATAGCTATGAGTAAAGAATATATATCAAAAAAAGAAGAAAGTAAGTATTACAAAAATAACAAAAATATGGTATAATTAATGTCAGTTAAGATAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGATATTTCTACTCGGCAAGGGTTAATCTCGGATATTATGTTACCATCTGAGCGTTCCATAATTAATGCGGGTTATATGCTCGCATTTTAATTTTAATTAATAAATTTGCAGTGAACCTATTTTGAAAGCTTGAGCCTTTAAAAGATTGTAATGAAAGGTGTTTGAGTGAATTTTATACATTATATAAAAACACTACTGAAGGCTTTACTGCAAAATAACAGAATTCGGTTATATACTTATGTTATTGAACTTAGTTTATATCAGTAGTTTAAGAGATTTATAAAATTAGG # Right flank : TTTTGTAAATATCATCAATATATTTGCTTTTTATATTGTTTTTATTTTAATACTGCGGTTAAGATTAGGAAAATTTAATATTTATTTTTAAAAAGCTAAACTTTTAATAAGTTTAGCTTTTTTAGTTATAAAACAATGAAAACATAATATATTAGGTGTATAATATTGGTAAATATTCCTTTGAGGCGGTGATATGTTAATGCATCAACTTATTAAAAAATATAGAGAAGGTGACAATAGAGCATTACAAAAAATAATAGATAATTTTATTCCTCTTATTTTAAAGGAAGCTTCAAAGTATAAAATAAAATGTTATGATTATGAGGATTTAGTTCAACATGGCTATTTATCTGTTATAAAAGCTGCAAATATGTACAAGGGAGAAGATAAAAACTTTAAATTCTATTGTATTAAGGCTATAAAACAAAACTACAAAGCACTTCTAAAAGGTGAAATAAAGCATCATCGAGAAATACCAAATGATAAAGATATATATCCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //