Array 1 1669398-1667723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002803.1 Planktothrix agardhii NIVA-CYA 126/8 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1669397 36 100.0 40 .................................... ACAATTGATTTTTCCCACCCTGGCACGATGTAATCCATAC 1669321 36 100.0 43 .................................... TTGTGACGTCTATTTTGCAGTCAACAATATTTTGGCCTTCTTT 1669242 36 100.0 36 .................................... AGATTTAGGAATTCACCAAAGGTTAATCCAGTCATT 1669170 36 100.0 44 .................................... TGGCAGCGTTGTATGTCCAACATTAGTTAAAATATTATTTTCAA 1669090 36 100.0 34 .................................... ATCAGGCTGGCAATTTTTTTCATTTCATTATTTA 1669020 36 100.0 36 .................................... AGGAGCGACGGGGGCAGTGTGTAGGATTTCTAATGG 1668948 36 100.0 40 .................................... AAAACCGCCAATGAAACAGCGATGACTTTTAATGCAAAAT 1668872 36 100.0 43 .................................... GATTGATATAGCGGGTTTTTAGTCCCGAAGGCTTTGGTCACGG 1668793 36 100.0 44 .................................... ATCCAGTGGCAACTGTTGAAGGATTGACTTGATTGCAGCGTCCC 1668713 36 100.0 42 .................................... TTTTGACATCCTGGAAAGTGAGTATTTTAAGAGTTCACCAAG 1668635 36 100.0 40 .................................... TACAAATATCCAGGTTGTTAACACAGTCTCCACTTTTACT 1668559 36 100.0 46 .................................... TCCCATAATTATCAACAACCGATAGATGGATAGCATTTATACGAAA 1668477 36 100.0 41 .................................... ATAGGGTCTGCGCTCCATGCGTTCGGTCTTGTTCGCATTTC 1668400 36 100.0 42 .................................... TGGAAACAGTTAAAACTAGAAGTCATTTTCTTAATTTCCTTT 1668322 36 100.0 50 .................................... ACAATTTAAGATTGTGAGTTTATTGTTTCCTTGAGGATTGACAACATCTT 1668236 36 100.0 42 .................................... TGGAAACAGTTAAAACTAGAAGTCATTTTCTTAATTTCCTTT 1668158 36 100.0 50 .................................... ACAATTTAAGATTGTGAGTTTATTGTTTCCTTGAGGATTGACAACATCTT 1668072 36 100.0 42 .................................... CTTGGTAGACAAAGAGATTGTTTTTGCTCCGCCACACAAGAA 1667994 36 100.0 44 .................................... AACGAAATCAAGAAAAAAGCCCAAAAATTAAAAGCTGAAAACGA 1667914 36 100.0 45 .................................... TTAAAAGTAATGACCGCATAGGAGGTAAAAACATAGCAGTTCCCT 1667833 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 1667758 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ================================================== ================== 22 36 99.9 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTAAAGAAACAAGTAAATTTGGCTGAGGATAACCTGAGATTTTATCCGCTTTCTCGCCATACTTGGGGAAGTGTAGAAATTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCGGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTTAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAACTTAATTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTATAGCAGTCGCCACATCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3405369-3404589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002803.1 Planktothrix agardhii NIVA-CYA 126/8 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3405368 37 100.0 39 ..................................... ACTTAATGGCAATGGTGAGGTGAACGGGGGAAAAGGGAA 3405292 37 100.0 37 ..................................... AATTCCCGACTTCCTAACGTGCATCAAAGCGCGATTA 3405218 37 100.0 35 ..................................... AGTCCAGTCGGTTGTTTATGGGGAAATTGAGGGAC 3405146 37 100.0 38 ..................................... ATGCCTCCGCACCCTCCGGCTAGTCCGGCGTAAGTCAC 3405071 37 100.0 36 ..................................... ATAGAAGAAAATCCCCTGCTGTTTGGCTCAGTGTTT 3404998 37 100.0 42 ..................................... TAAGTCTTGTTCTATTACATAACGCTCACTCCCTTTAGTAAT 3404919 37 100.0 43 ..................................... CACCGAAATTCTGGCAAAATTTAGCAGCAATCCGTTTACTGAA 3404839 37 100.0 32 ..................................... TTCTGATCTCCACAAAAAAAGTAGCATGTGAC 3404770 37 100.0 35 ..................................... TTCCCAGACGGCACAACCGAGACTCGCACGGGATG 3404698 37 100.0 36 ..................................... TCCCATAATTGGGAGTTTAGGAGGGGTAAAAATTTT 3404625 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TCTAGGGTTGAGTAAGAATTGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTCAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTCAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTAAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTCAACAATTGAGCGAT # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGAAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTGTCAATAACTAACCGGACTCAAAAATATAAACTGTTAATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 4539519-4541403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002803.1 Planktothrix agardhii NIVA-CYA 126/8 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4539519 37 100.0 36 ..................................... TTTTAGGATCTCGTTCAACTCCCCAAACAGACTTAA 4539592 37 100.0 37 ..................................... CCTTTTTGCATGGCAATCCAGAGCATCTAATCGGAAA 4539666 37 100.0 36 ..................................... CGGACGCTGCAATTAAGTTTTTATCGAGTTCAGTGA 4539739 37 100.0 38 ..................................... AATGGCTCAAACACCGTCACAATCGGTGATTCAAATAT 4539814 37 100.0 35 ..................................... GTTCGTGAGGCCTTACCATAAAAAATATCCTATAT 4539886 37 100.0 35 ..................................... CTGCAATATTCCGCCCACCAGAGGGGAGAATGAAG 4539958 37 100.0 37 ..................................... CTTAGATCAAGAAACCAAAATGACAACATACTTCTAC 4540032 37 100.0 39 ..................................... GGCTATAGCTAACAATTGATCAACAATTGGGATCTCAAG 4540108 37 100.0 38 ..................................... TTTGTGGCGATCAGGTTATTTAGAAATTCCTGATTTTT 4540183 37 100.0 35 ..................................... ATGAATTTGATGCGCGACGGGTTTCATGACTACAA 4540255 37 100.0 37 ..................................... TCTCAACGATTATACAACTGGCTGCAATCCGTTGAAA 4540329 37 100.0 37 ..................................... CCACGGGTTCCCCCGTTCAATCTTCGCATTAAACAGA 4540403 37 100.0 37 ..................................... GAATTGGTCAGATATTGGATCAATAATCCATCTTGAT 4540477 37 100.0 35 ..................................... CATTTGCCTATCCATCGGGTGAGTTTAACGCCTTC 4540549 37 100.0 37 ..................................... CCCGCAAAAATAGCACCCGTAATTCCCAAACTAGCTG 4540623 37 100.0 40 ..................................... AATTCACCAACAAAGGATAGATACGCATCCGCACTAAAAG 4540700 37 100.0 35 ..................................... TAACTCCAATCCCACTGACAGAACTTCCGTAACTT 4540772 37 100.0 37 ..................................... TAATGATTAATAATGCTGATTTAAAGGTTTCATTTTT 4540846 37 100.0 39 ..................................... TTCGATTTCTTTTTGAGCTTCTAATGCCCAATCGGGGAG 4540922 37 100.0 39 ..................................... TATTAACAATAACGGTTTCATGTTGGATATTTTTCTCTC 4540998 37 100.0 41 ..................................... AGATAGAATTCCGCCCAATTCTTGAACAATCCCAAAAACTC 4541076 37 100.0 36 ..................................... AGAATTTGTACCCATAATTCATCAGAAGTTATACCA 4541149 37 100.0 34 ..................................... TTATCACCCATTCCCAAGCCAATAAATCTGACTA 4541220 37 100.0 39 ..................................... TCTTGGGGGTTTTTTTGTGGGATTGCGAGCGTATCTTCG 4541296 37 100.0 34 ..................................... CTTCCACAGTCGCTCGACTCGTTCCCAGTTGCCT 4541367 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 26 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGCTTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //