Array 1 61245-59753 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMK01000035.1 Deinococcus indicus strain DR1 Spades_17_len:101344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61244 29 100.0 32 ............................. CGGGCGCGGCCAGTGTGGACATGGATCAGGCC 61183 29 100.0 32 ............................. AGATGTACATCCTGGGTGAGCACACGGCTGAC 61122 29 100.0 32 ............................. ATCTACAGCCCGAATAGAAGCACGCTGCTGCG 61061 29 100.0 32 ............................. TCGCTGGCGAGGCCATCCGGGCGAGGCGCCAG 61000 29 100.0 32 ............................. GGCATCCGCACCATCCAGACGGACCTGCGCGC 60939 29 100.0 32 ............................. CGAGGTACAGCATGAACGCAACTGCCCCCACC 60878 29 100.0 32 ............................. AAGGGGGCGGCCGGCACTGGTGAGGACGCGTA 60817 29 100.0 32 ............................. CGTCCGCCGCCAACTGGACGGCGAGGAAGGCG 60756 29 100.0 32 ............................. GCGAAGGGCGCGCAGCCGACAGAGTACGAGGG 60695 29 100.0 32 ............................. ACGTAAGCGAAGAAAGCGGAATACCGCTCAGC 60634 29 100.0 32 ............................. GCCTGGAGAACGTCTCGCGGCAGAGCCGCGCC 60573 29 100.0 32 ............................. AGGAAGAACCATATTAGCGGCACTCAGCGCCG 60512 29 100.0 32 ............................. CCGACTGGTCAGCCGTCATTCAACCCGCCCAG 60451 29 100.0 32 ............................. TCATCGCATCCTGAAGGAAGCTGAGCGACTGA 60390 29 100.0 32 ............................. ATGCACGAACGGCACGATATGAGGTTCAGGAG 60329 29 100.0 32 ............................. CCCTCGGGCTGGAAGACCACCCCACCCCCTAC 60268 29 100.0 32 ............................. TCCAAGTACGCCGACTTGGGCAGCGTGTGGGA 60207 29 100.0 32 ............................. GGACCGACCCGCTGACGGCGATGCTCACGCAC 60146 29 100.0 32 ............................. ATTGACGCGGCTGTCGGTGAGTTCATGTTCGT 60085 29 100.0 32 ............................. TCACGGGTGCTGTAGTTGACGGGGTTGAACAG 60024 29 100.0 32 ............................. TGCTTACTGCGGGCCACGCCTGTCTTCCCGTT 59963 29 100.0 32 ............................. TCCACGCTGCCGAGGTTGTCAGCGATGACGAA 59902 29 100.0 31 ............................. TCGCCTGCGGTTCATGCACCATATCCAGGTC 59842 29 100.0 32 ............................. AACTAAGCGAGGATCAGATCAGCAGCCCGCGC 59781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CCACCACCTCCTCGGCGGCGACCAGAACGACCCCGAACCCACCGCGCCCGGTGACCTCTGGGACCCCGAAGGCGACGTCCAGGGCGGCATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTCCCGCCCAGCCTGCGCGGCGAACTCAGCCGCTGGCTGATCGAAGTGCAACCCGGCGTGTACGTCGGCAACACCACCGCCCTCGTCCGCGACCTCCTCTGGGACAAGGTCGTGCAGTACGCCCGCACCGGCCGCTGCACCCAGCTGTACCGCGCGAACAACGAACAGGGCTTCGCCATCCGCCTGCACGGCGACCCCCGCCGTACCCTCGTCACCCTCGACGGCTTCCAACTGGTTGCCGTTCGCAATGCCCGTCATGCAGAATTGCAGGGGGAATACGATCCTCCCGAGGACGATGACAAACTGTGAGCTGCATCCGATCCCGACGAAGAGACTTCCAGGGGTCACATACCCGCTGCACCTCGTGTTTCTGAAGT # Right flank : CCCTCAATAACCAGTTGCAAAGCCCGCTCAATCCGAGCGGATGCGAGAAGGAAAGAAACGGGTTCCGGACGTGAAGCCAGCAATCCGGTGAAGTTCCGGATTGTTGGCGAAACAAACGGAATCCGTATGACATGTCGAGTCGGATCGCACCAACCAAGAGCAAAGCGGGCAGCCGCGCGACCTGTCCCGTCAAACCAACTGTCCGGGCTCAAGCCCAAGCAGGTTGGGGGAAACACTGCGTTGAACGACACACCGGTGATACACAAATAACAACTTGGAACCCATTCTGCCCGGCGTGAAGATGCTGCAAGCATTGCATCGGAATACGGGTCAGTCGAGCAAGTCGCTGGCGCGCACGCCGAGAGCTGTCATGAGTTTCTCGACGATATCGATGCCTACGCTGCTGCGGGCGCGTTCGATGACACTGATCTGGTTGTGGTGCAGTCCGGAGCGCTCGGCGAGGTCTTCTTGCGACCAGCGGCGCTCCAAGCGCAGTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73757-76713 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMK01000035.1 Deinococcus indicus strain DR1 Spades_17_len:101344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73757 29 100.0 32 ............................. GCAACAGCAGCACCAGACCGAGCAGCAACAGC 73818 29 100.0 32 ............................. CCGCCACTGACGGCACTTCCGAAACGGACGCC 73879 29 100.0 32 ............................. CAGCTCGTCCCGCCCGCGCTGGCCGCCCTGGC 73940 29 100.0 32 ............................. ACCGCCGAGCGCCTCGGCCTGAGCGTCGAAGC 74001 29 100.0 32 ............................. GCAATCACCCCGACCGTCAACCCCGCCCCCGC 74062 29 100.0 32 ............................. TTCGACGGGGGCTGGGTGTAGGCGTAGGGGTC 74123 29 100.0 32 ............................. GGGAGATTTTTTAGTCTGATAGGCGTCGAGCG 74184 29 100.0 32 ............................. CTTCTCTATGGCGTACTGGGCGCTACAGGTTG 74245 29 100.0 32 ............................. GGTCTGGAACGCTTCTTCCAGCAGATGCAACA 74306 29 100.0 32 ............................. GTCAGCAAACTCTTTTAATTGATCATCAGTAG 74367 29 100.0 32 ............................. AGATTCAGAAGCGTGTGTTGCGTGAGCGCAAT 74428 29 100.0 31 ............................. AGTTTGCTGACCTTGACGGTGACGGTATACC 74488 29 100.0 32 ............................. CGCTCCAAGCCCTTATTAATCAGACCAGCGCC 74549 29 100.0 32 ............................. ATGCTCGACCGCACCGGCAGCTAAGGAGACTG 74610 29 100.0 32 ............................. CAGAGTCATACGCCACGCTCCGCACCAGCTGC 74671 29 100.0 32 ............................. GCGGAACGGCGCGCAGCCGGTAGAGTACGAGG 74732 29 100.0 32 ............................. ATGGACGTGTTTACTACCCTATTGGATGATCC 74793 29 100.0 32 ............................. ACCGCTCTGATGATCGCTCCCTTCGCTCTGGC 74854 29 100.0 32 ............................. AATGATGGTCTCAATCAATTTCCAAAGGATTT 74915 29 100.0 32 ............................. AAGTCCGCGTGAACGGCGCGACCAGCTGGGCG 74976 29 100.0 32 ............................. TCTCGCCGGACCTCGATGTGACCCCCTGCCCT 75037 29 100.0 32 ............................. ACTCCGCTCTGCGTGAGGCTCAGGCGCTCCCG 75098 29 100.0 32 ............................. GATGATGTGCTCGGGCTGTTCGAGAGCCGCAC 75159 29 100.0 32 ............................. ATGTAATCCGGCCCCCTTCCGGGGGTTCAGCC 75220 29 100.0 32 ............................. GTCGACCAGACACGATCCAGCACCAGGCGCAG 75281 29 100.0 32 ............................. CCGACTGACGAACAATTAGAAGAGTTTGCTGA 75342 29 100.0 32 ............................. TCCTGGGCGTCCTGAGCTTCGACAAGGGGCAG 75403 29 100.0 32 ............................. CACCGCATCACGCACAAGTACGCCGCGTGGGG 75464 29 100.0 32 ............................. GTGTGAGGGGCTGAAGGTGCCGGGGATCGTCG 75525 29 100.0 32 ............................. CCTGGTGAAAAAAACCTCTGGGACATGCTAAA 75586 29 100.0 32 ............................. ACGATCACGCGGATGCGGACCCTCTCGCGCCT 75647 29 100.0 32 ............................. GTGTACATGATCGGGTCGTGTTTGGGCTTGAA 75708 29 100.0 32 ............................. CGACCCGCACCGGGTATGGCCTGCACTACCAC 75769 29 100.0 32 ............................. TTTACGCAGGACCCGCCCCCACCGCCCCCGAC 75830 29 100.0 32 ............................. CCGACGAATACGACTACTACGGCGTGCGCGCA 75891 29 100.0 33 ............................. CATCATGCCGTTTGCGCTGCCCATCAGGGCGGT 75953 29 100.0 32 ............................. TGCGGTACGTGCGGGCGCTCCTACGTGGGCAG 76014 29 100.0 32 ............................. ACCCCCACGTGTTCACGCAGTTCGTGCAGGAA 76075 29 100.0 32 ............................. CCATCGTGTGGACCCTCCTCGGCGGAGGGATC 76136 29 100.0 32 ............................. TTTACGCAGGACCCGCCCCCACCGCCCCCGAC 76197 29 100.0 32 ............................. GCGGCGCGAGCGGCACTGCGGGGGCAATCATG 76258 29 100.0 32 ............................. CAGCTCTGCCATGCCGGGCGAGTCTTCCGGGT 76319 29 100.0 32 ............................. TCGTACCCGCCGCCGTTTACGCCGATAATGTA 76380 29 100.0 32 ............................. AACTATTTCCCAACACCACACAATGCCGTGCA 76441 29 100.0 32 ............................. TTGACGGCGGCCCGCGTGCTGGGTAAATCGGT 76502 29 100.0 32 ............................. TTAGCAAACAGGTATTGCTGTTCGTTGTGCTG 76563 29 100.0 32 ............................. ACCATGGGTACGCTCGTCCTGGGCCTGCTCAT 76624 29 100.0 32 ............................. GTGCGGGCCGGGGATCGACTGCACCCCGCACG 76685 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CACGAACGCCGCGACAGACGACCTGGCCGCCGAAACCCCCCACTTCGGCACCCGCCTGGGCGACGACAGCCTCCGCATCGTCCCCATTCACCGCAACGGCACCGACTACCTCGATCCGAAAGGCCAGACCGCCGCTCAGATCACCACCCTCCAAAAAAATAACTGGGAAACCGCCCGCGCCATCTACCGCCGCAGCCTCCAGGTGTCCCGCCATGACCTCGTCAGGCACTACCGCGACCACCCCACCCGCCGGGGTACGGAACACACCGGCTGGGCCGCCCACCCACTCCTGCGCGACGCCGAACCCCTCATCCTGACCGGCAATCAGACGGTCATCGGCAAGACCCGCGTGGCCCTCGACCCCGAACTCGGCCTCACCTACGAACGCATAGAATGACCGCAGGCACCCGCCCGCGCCGCATGAAAATGTAAGCTGAGACTGAGGGGAGAGAGGAGACCTCCCACCCCCCTTACTCCCCCGGAGTGCGTGTTCCTGAAGT # Right flank : GCCCGTTTGAGGCGCGTCCCTCTCTCACCATCAGGCGTGGGTGGGTCGCCGCGCGGCGTCCCCGAAGGCCAGATCCGCATTGATTGCGGCGGCCGCGCGTGCGCCACTGGCGGCGGCCAGGACGACCTGCTGCTCGCCGATCATGTCGCCCGCCGCGTATACGCCCGGCACGCTGGTCAGCCCGCTTTCCGGCGTGACTTTCAACAGGACGCCCGCCAGGGGGCCGCGCTCAATGCGGGCGCAGTCGAGTTGCTCGGGAATCGTGGAGCGTTGCGCCTGCCCGGGCGTGACGAACAGCGCGTCGCGTTCCATCGACGGACCGTCCTGGAAGGTGACGTGCCGGCCGTCCCAGCTGGTGACGGGCCGCTCGTCGATGCGGACGCCCAGGTGCGCGAGATTGGCGCGCTGGTCGGCGCTCAGGTGATCGGGGCCGTGCGTGAGGAGGGTCAGGTGCGGCGTCCACTGCCGGAGCAGGACGCCGCGGTGGTAGGCCATGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //