Array 1 2340-896 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHID01000002.1 Streptomyces griseus strain NCTC7807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 2339 28 100.0 33 ............................ GGCGGGGCCAGAGCGGGGGGGTCCCTCCGGTCG 2278 28 100.0 33 ............................ CTGCTCATGCTGCGGGCCGGTCTCCAGGGCCGC 2217 28 100.0 33 ............................ CCCGTGGGCATCCGCCAGGCGGGCGGCTCGGAC 2156 28 100.0 33 ............................ GGACAGCGGCGACCTGCTGGCGCCGCCCGCGAC 2095 28 100.0 33 ............................ CCTGCGAGGGGGCGCGGGTGGACACCCGGGCCG 2034 28 100.0 33 ............................ GAGGACGGGCATGACGGCGTGGGAGAGGGCGCC 1973 28 100.0 33 ............................ CTTGGGGCCGGTCTCGACGAGGTGAGCGTTCAG 1912 28 100.0 46 ............................ CTGATGGCCGACCACCCTGGCCGACCACCCGGCCGCGAACATCATC 1838 28 100.0 33 ............................ TACCTGCACCGGTACGACAAGACCGCCGCCTGG 1777 28 100.0 33 ............................ CGCGGCGACGACGGGCTGGGAGCCGTCGACGCT 1716 28 100.0 33 ............................ GCGGCGCGAGCAGCCGCTACGGCGGCATGTGCG 1655 28 100.0 33 ............................ CGCCGCCCGCACCTCTTACGAGAGGCGCCTCCA 1594 28 100.0 33 ............................ CTCGCAGGTCACGCGCGGTTGAGGGGGGCAACC 1533 28 100.0 33 ............................ GCCCTCCGCCCCCTGGTGGCGGTTTCGTACTCC 1472 28 100.0 33 ............................ TCAGCGCGTTCAGGTGCGGGTGCCACCCGCCCG 1411 28 100.0 33 ............................ CTGGTCCGGTTTCCGGTGACTTGGACGGCTTGT 1350 28 100.0 33 ............................ GCCCGGTGCCGACGTTGAGGCGACGCTACTGAG 1289 28 100.0 33 ............................ CGCACGGGCCTGGTGGTCCGGCCGTCAGGTCCG 1228 28 100.0 33 ............................ CTGCTCCGTCAACTCACCACCGGCCCTCTGGCC 1167 28 100.0 33 ............................ GTGCAAGCAGAGGATGCCGCAGGGCGGCCACAT 1106 28 96.4 33 ......A..................... CTCGGCGCGCCAGCCGGACGGCGCCCGGGTCGC 1045 28 100.0 33 ............................ CGAGCCGGGCGCGGTCTACCGGATCTTCTGCCC 984 28 96.4 33 .............G.............. GACGTCGCCGCTCGATGGCGACACGATCCGGAG 923 27 82.1 0 .........CGTG..-............ | T [898] ========== ====== ====== ====== ============================ ============================================== ================== 24 28 99.0 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGATCGTCGTTCCACTCGCCGCGTTCAGCTTCACCACGCTGTCCAGCATGTCCTGGTGGCGGAGTACCGACGACCGTCCGTTCCTCCTGGGCCGCAGGCACTGGCGATTCATAATGATCTTCGTCGCAGCCCTGTCCCTAATGGCCGGCTTCTTCGGCTCCGCCCACCAGAACACCGTCGCCCTGCTGCTATCCGCGATGGTCACGACCGCCGGCATCGCCGGCCTGTGGCTCCTGCCGCCTGCCTTGGCGCCGCAACTGCTCGATCTACGCCCGAAAAAGTCGACGCAAGACCCGTCCTGACGACGCCTTGAAGCGGCGTCCCCGCTTCCTCCTTGTGACACCCACCGACTCCCCACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATTCGCTCCCGACCCACGAACGAAGGGTGACGCACATGAATGAAAACGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : ACTCCGTGCCCCCGTTGCCACCCCGCCCCCGAGGCCGCTCCGCGCCCATGTCGCTGCCTATCAGGCGGAAATTGACCAGCTGTTGAACCTGAGATGATGACTGGCACCAGGTAGTTGGCGACCAAGCTCCCTGCGCAACCGCGGCGCCTATCACGTGCCCCTCCTTGGCCGTCGGGCTCTCTCACCGGTCAGACTGACCGCCTGGGCCGTCCCCGTAGGCTGTCCCTCCCCGACGCGCACCAGGAGTCCTGCGTCTGGTCGAGTACGTCGACAAGGATGACGCCGGTTGCCCCGGTGCAGAACAGCCGAGTCCCCCAGACTCTCGCGGTGTGCCCTGAGGAGGAAGTACGTGGCCGTTCTTGCACGTCACAGCCTTGTCGGCTCGATGGGCAGAGTCGGTGCGGCAGGCGACAACGCGGCCATGGAGAACTTCTTCGCGCTGCTGCAGAAGAACGTCCTCGACCGCCGACCCTGGCGGACCAGAAACGAACTCCCGATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1400240-1398533 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHID01000007.1 Streptomyces griseus strain NCTC7807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1400239 37 100.0 37 ..................................... CTCTCTTACTCCGGCGCCTCGCAAGAGGCCGCCGCGG 1400165 37 97.3 36 ..........................C.......... TGCCGCCTGCTGCTCATCATCGACGCCGTACCCGCC 1400092 37 97.3 38 ........T............................ TGGCTGAACACCTGCCCCAGCGCCCCCGGGGGGCGCGG 1400017 37 100.0 35 ..................................... GACCAGCTTGGATGCACCCACGTGCAGGTCCGGGA 1399945 37 100.0 34 ..................................... CGCCCTTCTGGACTCCTCGTCCCGGGAGGTGCCT 1399874 37 100.0 36 ..................................... ACGGCCCTGGTCGAACAGGTCTACCCCGGTTACCTG 1399801 37 97.3 36 ....................G................ TCTCCTGACGATCGATGGGGCCGCCGGTCGGCGGTG 1399728 37 97.3 36 ......................G.............. CCATTTTGGGCATGGGCGGCTTCGCCGGCCTTGAGT 1399655 37 94.6 37 ................A.....G.............. GCCCCTGCGAGAGACGACCAGCCCCTCATCCTCCAGC 1399581 37 100.0 37 ..................................... GGCAACGTACGCAGGAATCATGAAGGCCACCGTGAGG 1399507 37 91.9 35 ........T.....T.......G.............. TGCACGTGCGCAACCCAACCGCACGCCGCCGCCAA 1399435 37 97.3 35 ......................G.............. TTGCGCTCCGCAGGGGTGCCGTAGTCGGCGGCGGC 1399363 37 94.6 37 ...................A..G.............. GGTACAACCGGCGCTGGGAAAAGCCGACTCGTGCAGG 1399289 37 91.9 37 ....T.................G..A........... AGGAGCACGGAGGCGCCACCCGTGAGCACCCGCAGGA 1399215 37 94.6 35 ..........T.....A.................... ATGACTGCCGACCGGGCCCACTCCGTGAGGATCAG 1399143 37 97.3 38 ..........T.......................... CAGGTAGGTGATGGCCGGCATGGTGCTGTCGTGCGGGT 1399068 37 94.6 35 ..A.......T.......................... AGCGTGCTCTACCGGCCCCTGCCGGCCGGGCAGTC 1398996 37 94.6 36 .......A..T.......................... CGCGTCGCCGGGCACAAGGCCGGGGAGACCCGGCTC 1398923 37 94.6 36 .....................A.......G....... CTCGGCGGCCGTCAGGACGCGAAGCCCCCGCGCGGG 1398850 37 89.2 36 ..................A.A.G....A......... GCACACGGGCCCATCACCTGGCTCACCGGCCACGTC 1398777 37 91.9 35 ..................A...GT............. TCGCACATGACCACTCGTAGCGGTGCACCTCGGTG 1398705 37 94.6 27 ...............G......G.............. GTCAGCCCGTCAGGTACGTGATCCCGG Deletion [1398642] 1398641 36 83.8 36 A.........TT.......-........A.....C.. ATCCCCGGCGAGCCAGCCGTCCGCACCGGCTGCACC 1398569 36 86.5 0 C......G-....................G......A | T [1398557] ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 95.0 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CACGCATCCTGGCCCGACACCTCCGAGGAGACCTCCCCGGCTACCTGCCCTGGATCGCAGCCTGATGGAACTCCTCCTCACCTACGACGTCGATACCACCACGCCCGAAGGCCGCCGCAGGCTCCGCCGTGTCGCCAAGCTCTGCGAGGGACACGGCATCCGCGTGCAAAAATCCGTCTTCGAGATCATCACGGACGACCAAACCCTGCTGCAGCTCACATACGACATCGAAGACCTAATCAACACCGAAACCGACAGTGTACGGATCTACCGACTGCCCCACTCAGGCACAGAAACCGTCCAAGCGCTCGGAGCGGCAGCACTTCACCCACATCACAGCGACCTGATCCTGTAGACAACGGCACGCCCGCTTCGGAACCTCAAGCACACACGCGACACGCCCATCGCACCTAAGGAGAATGTCGGATATCTGCGCGAATGGGCATCCTTCAATTGGCTTTCGTGAGCACTCAGACAACCAAACCCCCTGGCCAACCAGG # Right flank : GGCCGAGCTTCACGGCCTTTCGGCACCTCGCACAACCCTTAGAATCTCACGCCATGCGACGCTACAGACACTCAGAGCAGCGGGTGCCGACGGGCCGCCCGTACCTTCTGAGGGAGGTCTATGACAAAACCCCCAGCATCGACGACCGAATCTGCGCTCTCCCCGACCCCGCCGATCCCACCGAGTACGAGGCCATCGCGGACGCCCTGTGGGACCTGTTCCTGTCCACGAGGAATCTGGCGGAGCAGCGCAGCGGCACCGGTTGCACGCGTCACCCCGATGGGCCTGTCGACACCGAAGCCCCGGAGGACTGGGGGTTCTGCTTGCTCTGCAACACCAACCGGCGTCGGGGACAGCCCAGTTCGACCGCAGCGCAGAAGCCGCCCAAGCACGTCTGGGCCGTTCCGCCCCCTCCCTACACCCACGGGGCGCTTCTCCAGACGCGCCGATCGCTGAACGACGCGCTCCTCGAACTCAACTACCGGGCCCCGGACGCTTCC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1408614-1409090 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHID01000007.1 Streptomyces griseus strain NCTC7807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1408614 37 100.0 37 ..................................... CCACCAGCCCGACGAGGGCCAGTGGTGGGTGGTCGAG 1408688 37 100.0 37 ..................................... GGTCCATTCCAGGGACCGTCGTACGCGCGGACTGCGG 1408762 37 100.0 36 ..................................... TCCCGCTTGAAAGCGACGACGCAGTAGATGTCGATG 1408835 37 97.3 36 .C................................... ACCACGGCCTCGTCCATCTGCCGGACCCACTCCGTG 1408908 37 100.0 36 ..................................... GCCTACACCGCCACCGTGCGCCGGGACCAGGTCCAC 1408981 37 97.3 36 ..............T...................... TCCGACCATCGCGGTGACGCCGCCATTGGTGAGGGA 1409054 37 75.7 0 ..........T.......A.A.........GAAGGC. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.8 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CCACCCGAGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGACCCCTCAACCACCCCCAACCGCTCCTGCCAGGCACAACACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCGCCTCCCCCGCCCCGAACACCTCACCGAACCGCCGCGCCAGAGCAGCCGAACCCCGCAGGTGATCCACCAGCAGATGCCGCGCACCCCACGGATTCCGGCTGTGCGCGAACAACTCACGACCCGACATCCCGGCCCCCCCAACCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGACCACCGACACCACCAACCCAGACCACCCCGAAGCGACCAGCCAGGCCGCTTCGGAACCTGAAGCACACACACGACACGCCAATCACACCCAAGGAAAATGTCAAATTTGCTCGCAATTGAGCCTCGCTTAACTCGTGGTCGAGAGCACTCAGACAGATGAACCCCTGGCCAACCAGGG # Right flank : CATCACCAAGCGCGCCGTCGCCGCCTGGGAACAGTGGAAGGCGGCACGCCCGTGACTCACCCCGCGCCCGACCCGGCCGTGGTCGTCGAGGACGTCGAGGACCTCAAGGCGGCCGTCGTCGCCCTCACGGCCCAGCTCGGCGCCCTCGCCGGCGCTCCGCCGGGCCCCGGGCCGTCCTCGACCGGGCCGGACCCCGTGGAGGAGGGGTACCCCCCGTTCATCCTCCTGCTGGAGGGCGACGAGTACGAGGCCGAGCTGCGGGCCCTGGCCGAGTGGGTGGAGAGCGTCCTCGTGCCGGGCTACCTCGGCGAGGCTAGCCAGGACGCCCGCTGGTGCCACCAATGCAATCCCGAGCGCCAGCAGGAAGACCTCGCCACGCACCTGCGGGCCGCATTCGCGGTACTCGAAGAGCGCGTGCACGCAGGCCGCCTCGGCAGCTACGGCGTGGCCACCTGGTCCGGCTTCCAGGAGAAGGCGTTCACCGTCCAGCGGCTCGACCA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-20.50,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //