Array 1 25533-26944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000022.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 25533 30 100.0 37 .............................. TGATTGCTGCGTTAAATTTTTCTTCTACTGCTTTAAG 25600 30 100.0 35 .............................. TGGTTTTGTATATCTCTATGTAGTTTTATCCACCC 25665 30 100.0 34 .............................. GGCTATCAACTTTGAACCTTGATTGTTCTAATTC 25729 30 100.0 36 .............................. TCTTTAATTTCTAACTCTCGAAGACCGTCACAACTT 25795 30 100.0 36 .............................. CTTCTATCTGACGTCTTCGTTCTTCCAGCGCGGCGA 25861 30 100.0 35 .............................. TATTCCGATCAATTTTTTACCGGCTACCAATGGTA 25926 30 100.0 34 .............................. TTTTTATCTCTTATCTTTAAAACCTTTACCTCTT 25990 30 100.0 35 .............................. GAGAAGTCGGCGACATCTATTATTCAATTAAACTG 26055 30 100.0 36 .............................. CTCAAAAACCAGTACGGTTTCATTCTCAATCCCCTC 26121 30 100.0 39 .............................. CTGAGGCTCATTATGAATACTGTATCTTTTTAGGCACAA 26190 30 100.0 37 .............................. TTCTAAGGCTGTTATTAAATTTGCTTTTGCTTCTTCT 26257 30 100.0 36 .............................. TTAGTTTTATAGTAGATTAAATTTTCTGTATTAAAA 26323 30 100.0 37 .............................. ATACTAGTCATTGACGATTGTAAGTCTTTGCTTCTTC 26390 30 100.0 35 .............................. AGTCTGTTTGTAGTTGCGCTATATCTTTTATTGCA 26455 30 100.0 36 .............................. AAATTCATCTGGCTCATAATCTTCTGGCAAAATAAA 26521 30 100.0 36 .............................. GCAGTATTAGTGTGGATACTATTTCACTAAATGAAA 26587 30 100.0 36 .............................. TAGTTATATCCTCATTCAAATCTCCCACCCAATTTA 26653 30 100.0 36 .............................. TTCTTTAGCAACTTCGGGATTTAATATTGTTTCTGT 26719 30 100.0 36 .............................. TGGGAAGTATTTACTATAAAAACTTTGGCTGATAGA 26785 30 100.0 36 .............................. GTAATTCATTACAACTTTTCTTATGTGTTTGTTTTG 26851 30 100.0 34 .............................. TCACAACAAGCATCTGAGTTAGCAGAGGAATTAG 26915 30 86.7 0 .........................C.GTT | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.4 36 GTTTTAATCGGACTATTGTAGAATTGAAAC # Left flank : AAATAGGTATTGCAAAATGTAATTATCCATGATATAATGTTTTTCGCTTGGTAAATTTGATGACAAGCATATGCGCTATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGTCCGGGGTTCGAGCCCCCGATGGCGTATTATGCGATTGTGGCGGAATTGGCATACGCGCTAGACTAAGGATCTAGTGGTCCTAGACCTTGAGGGTTCGAGTCCCTCCAATCGCACTAAATAAAAAAGATATCTCCTGATCAGGAGATATCTTTTTTGCTATATAGCAAATTCTCTAGGATTTCCTATATAATAAAAAGATGTTCTCTTGATCTTGACAATGTACTTTGAATCAAAAGTGATCTTAAGATTCATGTCGTCGACCCTCGGTGATGCAAAATACCCAGGGGGTCGACGACTTTTTATTGCATTTAAAAGGGTTAATTGGTAAAATAAATACAAACAAATCAGGATTAAGAGATAAAAAACGTTGATTTTACTGCT # Right flank : TTTGAAATCTTATGTTCCAATAAATATGTTTCAATAAATCCCTGACTTTTTTGGAGTCAGGGATTTATCTTTTGCATCGAAAAAAATTGTACAAAATACTAAAAATTACACCACTTTTTATTATCAGAAATGTATGATAAAATAAATGCGTGATAATATAAATAATAAAATATCACAAATTTTAAAGGAACAGCTGATTTTTTTTGTACAACAACGATGGGGGGAAGATGATACCATGAACTATTTGAGGAATTGTAAGGTTTCTACAAAGCTTTTTTTAATGGTACTGCCGACAGTGGTGATTGCGGTATTTTATCTTTATCAAATCGCTTGTCAATCCCAGAAGATCAGTGCCATTACAAAGAAAACATATTATGATGAGGTCTATGTGAATACGAGACTCATTTTAAATGCGGAAAGAGCTTTTTACGAAGCCACAATTGCAGAAAAAACTTTAGCACTATCCGGTGATGAGTTGGATGCAGATGCACGCTCCTCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACTATTGTAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 33940-33513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000028.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 33939 31 100.0 35 ............................... TGGATGATACCGGAAATGCATGGCGATTTAGAGAC 33873 31 96.8 35 A.............................. TATTTCTACGGAAACATAATAGAAGGATCAAACAT 33807 31 100.0 34 ............................... TTGTGTTATATGCTTTTAAGGCCGGGTGTTCTCT 33742 31 100.0 35 ............................... GTTTTTCCGGATTAGGTTCTCTTGAGCCATCCGGT 33676 31 100.0 35 ............................... ATACCTTTTATTGATTTTGCAACAAGCATTGGGTC 33610 31 96.8 36 ..............................C GGATATGGCACAGTAGATGCTCATGAAAACTTTATG 33543 31 90.3 0 G..........................GG.. | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 97.7 35 TGTTTTAATCGGACTACTGTAGAATTGAAAT # Left flank : CTGAGAAGTATAAAGAATAGTGGCTATATTATATGAGTTATCCCAAAAAGAGGGTTAACCTGCTTTTTAAAAACCGAGAACAAGTTGACACTGACGGTCGACTACTTTTTATTGCATTTGAGAGGGATAATTGGTAAAATAAATATAAAAATTTTTTAATCAATAGAGTAAAATGTTGATTTTACTG # Right flank : ATTAAATAATTGGACAAAAATAAGTGGAGCAAACCTCCACTTATTTTATGCAAAATATGTTGTAAAGAATGAAATATTAATATTTTTGAATCATAGCCTTTATATTCATCTCCAAAATTACTTCCCGCCATATGTTGAGTCTCCTGGCCCGAATTCGAACACAAAGGTCATATTCCATATTGGTGTAATGTATACGACCAACTGGGCGGAAGGGGCCAATCTTTGGGAACCGATCGAATAACTGACGTCAAATGGAATCTGAGCTTTTAGAAGAGCTGCTTCTGCTGCCAGAAGGAGCTCTTCGTTAATGGCTTTAGCAGTTATTAATTTTTGAAATGCTGTGGTGGCAAGTAAAGTAAAGAGTTTTTCAAAATTAGACACGTTTTTTATATTGCTCAACTGGGCAAGTTTGCTGAAATCAATATTTTGATTGTTATTATACGAGTTTTGAAGGCTCATAACATCACTCCAAAAGTTTTATACTATACACTGTTTTCTTA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAATCGGACTACTGTAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 3235-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000042.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3234 30 100.0 36 .............................. TTAGTTCTTCCGGTGCATATCCGGTATAAAGGGCTA 3168 30 100.0 36 .............................. TCTTCTTATTGTCCCTCTTCCTAATCCTATTTCTCG 3102 30 100.0 36 .............................. CTTTGAGAAATCAATCTTTTCCTTTTCTGATTGCTG 3036 30 100.0 36 .............................. AGGAATCACTAAAGAGCAAGAAGAAGAAGCTGTTAG 2970 30 100.0 34 .............................. TTAAATGAAAATGGTTGGCATGCTGGGGATGGTG 2906 30 100.0 37 .............................. TGACCATCAAGTAATAAGTCATCATCATTGTATTCAA 2839 30 100.0 35 .............................. CCTTCAGTAGCATATCATCTTTTTCCTGTTGGCTT 2774 30 100.0 36 .............................. ATATAACCTTTTAAGTCCGCATAATCTGCCAAATGC 2708 30 100.0 37 .............................. CAATAGAGAATATGTCTATTTGAACGCTGCCACTGAA 2641 30 100.0 36 .............................. ATAGTTCTTCATCTGTCATTGTACTTGCCTTATTAA 2575 30 100.0 36 .............................. TTATTTAATTAATCAAAGCCTTTAAAAGTGCAATAT 2509 30 100.0 36 .............................. CTGAATGGCACACCATAAAGCCAAACCACCTTCTTA 2443 30 100.0 37 .............................. TCCTTCCAGGCTCCTTAAAATATCATTTATTTCTCTA 2376 30 100.0 35 .............................. AAAGTAACTGGTAAAGGACAACAGTATTTTATAAA 2311 30 100.0 37 .............................. TGAGGTCTTCTTTTCATCTTTCTACCGCACACACCGC 2244 30 100.0 36 .............................. CTCTATCAAAATATAAGGATTTGACTTATAATGATA 2178 30 100.0 34 .............................. CCAGTCATAACGTCAATATCTCTAAATCCTGTTG 2114 30 100.0 36 .............................. AATAATAAATCGTACTTCCTGCTCAGCATTCACTGC 2048 30 100.0 37 .............................. CAATAGAGAATATGTCTATTTGAACGCTGCCACTGAA 1981 30 100.0 37 .............................. GTGCTTCATCATATGAATTAAACTCCAAGCCATTAAA 1914 30 100.0 36 .............................. TTGTTGGTGTTGTTATTACAAGTATTACCTGTGATA 1848 30 100.0 36 .............................. TGTGCAGGAAGTGGAACTACATTAAGAGCCTGCATG 1782 30 100.0 36 .............................. TTGTGTTATATGCTTTTAAGGCCGGGTGTTCTCTTA 1716 30 100.0 33 .............................. TAGAAATCAATAATGCAATAACAGCATTACCTG 1653 30 100.0 37 .............................. AGTAAAATCTATATTGGATTCTTTAAAACCTATTAAT 1586 30 100.0 34 .............................. CAGAAGAACCACGAAAAGACACAAACAAGAATGA 1522 30 100.0 35 .............................. ATGTAATAATTGTGGTTGTAAAAACTTATCTCAGG 1457 30 100.0 36 .............................. TTTTGTTCTTTGTATTTGTCCACGTTCATGTTGTGG 1391 30 100.0 35 .............................. AAGATATGCAGGGTTTGAGCTATCTTTTCCGTCAA 1326 30 100.0 36 .............................. AGGTCCTCCAGGGGAAATCGAAAATTTAACCAGTCA 1260 30 100.0 36 .............................. ATCGTCACCACTTTGCTCATCATAGAAATTTTCTAT 1194 30 100.0 37 .............................. GTTCTTCCTCAACCTGCTTCAACATTCCCCAGTAATA 1127 30 100.0 36 .............................. ATTCGATAACGGGATATATAGTAACATAGAAGGCAG 1061 30 100.0 36 .............................. CGATAAACGTATGGCTATTTTGAAGGTATACCGACA 995 30 100.0 37 .............................. GAAAAAATAAACAACAAATTTATTTTGTTGTTTTAGT 928 30 100.0 37 .............................. CGCATATGGGAAGTTAGCTTTGAAGTTACGGAGGTTG 861 30 100.0 37 .............................. GTAATATTAAATTTCAGAAAGTGATATCAGTATTCAA 794 30 100.0 36 .............................. AAATTTGGGTCTGAAAGTAATTCTAATAATTTCTTA 728 30 100.0 34 .............................. CGAAAGGTGGTAAGAAGAATGAAAGTAAGCGAGA 664 30 100.0 37 .............................. AGAGAAATATGTTCGTTTCTATTGCCCTGAAAGGATG 597 30 100.0 36 .............................. GGACAAAGAATATTTCGACGTCTATGGCCAACACCT 531 30 100.0 36 .............................. GCGTGACAGCGAAGGAAAGAAGATCGTCGGTGTGCT 465 30 100.0 35 .............................. AAGGATACCAGAAAAAATCAAAGAGCTAACCGGAA 400 30 100.0 36 .............................. TTTGTTGCGCTATCGTCTGCAGATTTCTTTGCTGTC 334 30 100.0 36 .............................. AAGACATTAAAGCGATTAATTATCAGAAAGAACATG 268 30 100.0 36 .............................. TGAAGCGCGCTAAAACCCTTCTGGCTTATCGCGCGA 202 30 100.0 36 .............................. GTTGTAAGAGCCTTTTCTCCTTCTTCTCTTAACTTC 136 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 48 30 100.0 36 GTTTTAATCGGACTATTGTAGAATTGAAAC # Left flank : ATAATTGGTAAAATTAATACAAAAAATTTTTAAAGAGCAGAATAAAACGTTGATTTTACTGC # Right flank : CCCGGTGCATCGTTTCTCTTAATCCCCCTAACCCATTTGGACAATCACACACTAGTTTAGTAAAATAATACTAACAGGAGGTTGTCAAAAATGAGGTCAAAGCAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACTATTGTAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 9432-7750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000032.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9431 30 100.0 36 .............................. TTTCTTCGAATTTGGTTACATATTTCGCTGTAAAGA 9365 30 100.0 35 .............................. TTTCTAACTGCACCTTTAAAAAGGTCGTCTATCAA 9300 30 100.0 37 .............................. AAGCCAGAAGCTAGAAAACTTATAGCCAAGGCTTTAG 9233 30 100.0 35 .............................. TAAACTTACAGGGCAAAAAGGCGCTATTTTTACCG 9168 30 100.0 36 .............................. CGTCGATTCCCTCCCTTCTCCGGCCGGCCCGTTAAA 9102 30 100.0 36 .............................. TAATCAACGGATCAGAAAGGCTTTTATCTGCCAACG 9036 30 100.0 36 .............................. GGATTTCATTGCCTTTTTTGAAGTATTTCTCCATCA 8970 30 100.0 36 .............................. CCTACTCTAATTTCTCTAAGATCACTTCTGCTCTTG 8904 30 100.0 34 .............................. TGCATAAGGAGAATCTGTTCTAAAATTTAAAGAA 8840 30 100.0 36 .............................. GCTAGAGGTAAGTTCTTACAATGGAAGAAAGGTATA 8774 30 100.0 36 .............................. TTCTCTATCTTTATGAGGCCCTATTATGTTTACTCT 8708 30 100.0 36 .............................. TCCTTTCTTACTTTAGTTTTTTTAATACTTGATAGC 8642 30 100.0 38 .............................. GGAGATACTTTAGATGCGGTACAATTTTGGAGAGCGGT 8574 30 100.0 36 .............................. TATTTCTACTAGATAAAAAACAGCAGCATTTTGATA 8508 30 100.0 36 .............................. TTGGATGAAGAAACCCTTAAGGCTCTTGAAGGAGCA 8442 30 100.0 37 .............................. ACAACAAGGCTCCTATCTATTGCGGAGACTTCAAAGA 8375 30 100.0 36 .............................. TATGTCCTTTCGGTCATCTAATAATGAGACCCCAAA 8309 30 100.0 37 .............................. TCGATCGTAAAGCGAATTTTTTACGCATACCCTTTTG 8242 30 100.0 36 .............................. AGGTCATATTCGTCGGCATATCTACGGTCACCATAT 8176 30 100.0 37 .............................. TGATATTACAGGGAAGTTCAAGATGTTCAAGATGTTT 8109 30 100.0 36 .............................. TCGATAAAATCAATCGGGAATAAGTTCCCGAAATAC 8043 30 100.0 36 .............................. TAGTTATCTTCATAATAATTATCAGAAGAAGATGGA 7977 30 100.0 36 .............................. GACGTATGAATAAAAGCTGTCTTGTAACTCTCCGTA 7911 30 100.0 36 .............................. CTATTTTTGATGTAAAAAACATTGTTTATCCAGGCA 7845 30 96.7 36 ............................G. AACAGATCAAATGAATGAAAACATGAAAAATGCTTA 7779 30 76.7 0 ....C...AA..T.......AT.......G | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.0 36 GTTTTAATCGGACTATTGTAGAATTGAAAC # Left flank : TTATCCCCTGTCGTTGCAACGACAAAAGAGGAAATTAACGGGGTCATAAAACCGAGAGATTGTCAATTGGAAGAACGAAAGTATGCGGAAAATATCATCCGTAATTTAAAAACGAAATATGAATTAATATATGATAAGCCTTCATCGGGCGTTGACTTGAGGATTTCATTTAAGCAGGAGGACATAGAAAAATATAAGAAGGGCAAACTGATTTATTATAAGAATACCTTTGTAAAAGGATTCTTATGTCCCTTTGAGGCCAGTGGAAGCCCGGAACTTATGGAGATCATGTGGGAAGTAGGAGCCGGTGAAAAAAATAGTGGCGGATTTGGAATGGTTGAAGTTATGAATTGAATAGTATCAAGCAAAAAAGTCGTCTACCCTCGGTGATGCAAAAATGCCAGTGGGTCGACGACTTTTTATTGCATTTGAGAGGGATAATTGGTAAAATTAATACAAAAAATTTTTAAAGAGCAGAATAAAACGTTGATTTTACTGCT # Right flank : GTCTACATTTCAGTTCTTTGTAGAAACTGTAATGTAGACTTTTTGATTTAAATACACTACTTAAATTGGTTTGTGTATTCGAATTCTTTACTAATCTATCAGTAGTTTTAAAATTTACAAAATTATTCATATAATGAAGGAATTTTGATTTTTCTGTAGAAGTATATAGATATATGACTTTAGTAAGTAGGAGGTGAAATGATGGCGTTGTTAACGTTTACAGGTCATCCGTTTATAGATTTAGGAAGCGCAGTTCTTAGCATGATTTGTAATAAGGAATGTTATGCTGAAGTAACCAAAGAAGATATTTTGAATAATCTTGACGAATTTTTAGAAGTGATCAAACATCGCTTTAATGACTTGAATGCGAGCGAAAAAGAGCTGGAGTATAGTAAGCGAGGGTTAAAACAACATTTTGCTTTAATGTACAACATTAATCACTATTTATTTGGAATAAATAACAAAATTGAAAATCCTATTTCCGGAAAAAAAGAGACGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACTATTGTAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 19602-19375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000032.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19601 30 100.0 37 .............................. TTTACTTTGATCACAAAGATCAATTTGTCCTCTAATA 19534 30 100.0 36 .............................. ATGAGCAAATAGACGATTTAAAAGCCAAAAAAAGCG 19468 30 100.0 34 .............................. TGCAGTTAATACAAAGTCTTCCATGCCAGTTCTA 19404 30 90.0 0 .......C....T.........G....... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 36 GTTTTAATCGGACTATTGTAGAATTGAAAC # Left flank : TAGAATCAAATTAGGGTGAAGAAAAATTAATATGAAATTCTAAGATATATTAAGCATTAGTGAGTTTTTGTCCAAAATAAGGGGGACAATACGGTTTGAAGTTGTCTTATTTTGATG # Right flank : TTTATGATATGTCCAAGTTTTTATCTACATAGAGTTAGTTTTACTATTCGTGATATCTACTGATCAGAGATCTTATTCCATGTTTTTAACATAATGAAAAATCTTATAGAGTCTTGGGTTAGATGATTTTGTAGGATTTAATGTGTTTTAAAAATGTTATATTTTGGATTTGAGTTGTAATAGTAAATTTATTAAATCATTTTATTAAGTATGGAGCTTATATTGGGTAACATTAGGATTTAAGGTAATAGTTGCTAATCAAGATGTTTTTTGTTAATTTTGATTGCAATAAATATTCGTTTATGAATATTACTATTGAACTGTTAATTAATGAAGATGCTTGGGTAAATCTTGACAGATAATAGGTTATCTGTCATTTTTATTTTGATTTCTGTAAAATTATATTGTAAAAAGTAAGAAATTAGGATAAAATGATAATAAAATATTATAATTATTATAAATACTAATAAAATTATTTTTATTAATTGATCGGAGGAGTT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACTATTGTAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 10182-9956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000009.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 10181 30 100.0 36 .............................. ATGGGTCAATGGGAATATGCGTAGAAAAAGAAGATG 10115 30 100.0 35 .............................. CAATTCCTTGATTTGTCCTTTCATGGTTTCAGCCT 10050 30 100.0 35 .............................. TGAATGTAGTATCCTCTTTCTATATCCATTTTTGT 9985 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 GTTTTTATAATACCTATAAGGAATTGAAAC # Left flank : TGAAAAACATCTTATCGGAGAAAATGAATATGAAGCTTTTGAAGCACAATGGTAGGTGAGGAGTATGTTTGTAATTGTTGTTTATGATATCAAAGAAAAGAGAGTTGCAAAGGTTTTAAAGCTTTGCAGAGAATACTTTACCTGGGTTCAGAATTCTGTGTTAGAAGGAGAACTTACCGAATCAAAATTGTTACAGTTGCAAACAAGACTAAAAAAGGTTATAAATGAAGAGGAAGATTCTTTGCTATTTTATACTTTCCGTACACAGAAATATTATAAACGAGAAGTGATTGGAATAGAGAAAGGTGGAGAAACACTATTCCTTTGATAATTTGTCGTCGACCTCCAATATAGCAAAATTACCAGGGGATCGACGACAATTCAAGAAGTAATAGATATAAGAAAGTTAAAGGATTTGTAAAAGTGAAAGTTAACATAAAATTAATAAGTAAAGTTTTCTATCAAATAAAGAAAGCTTTATCTTTAGCATATTTTTATGG # Right flank : GTAATATGTTTCAAAAAAATTTACTATATCAAAAATGTTTCATAATATTATGTTGGATTATTATTTTTGATTAAAATGATTTCAATATACTTTTAATATGTTGATACAGAATAGTATTATTTCTATAGTCATGTGGATCATGGTGTCCATGTGATTTTTTATGTCATAATTATTGAAATTTGTGATATATTGTAAAAAAAGATTGAATAATATAACTTATTGTTATAATATAAATATATAATAAATTTAGATATTGAAGATTTTGATTGAATATTTACATGTTTTAATAGTGGAATTGTAAGGAGGGGGAAGGATGGAGGATATGCATTGCCTATATCCTAAAAAGCTGGATAGTAACAGGTTAAATCAATATTATGGGGATATACGAGATCATATTAGTAAGGGCAATATTAGCATTTTAGATCAATATAAAAATGTTCCGTATGTTCTTATTGATAAGAATGGAGAATATGTTCAGACGAAAGCTTCTGTATATGATG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 19138-18170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000009.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 19137 30 100.0 38 .............................. TACATCAAATTCTCCTCCTTTTTGTTCGGCGAATCTAA 19069 30 100.0 36 .............................. TATCATATATTTTTATATTGTCAATACTAATTTAAA 19003 30 100.0 36 .............................. TTTCTCTTCAGTTACTAGACTATCAATATATGCAAC 18937 30 100.0 37 .............................. AAGAAAGAAATCGTAAATTATAGAAACCTCTATTTTT 18870 30 100.0 36 .............................. TCAAGAATTAGCTGTTTGGGTTTTCTGTTTACAAGA 18804 30 100.0 38 .............................. ATGATTACATATACTTTACTCATAATGAATCCTCCTTT 18736 30 100.0 37 .............................. TACGTTATCAGTCTTTCGGGGCGTCGCCGCCAGGGTC 18669 30 100.0 37 .............................. CTTAGAAGATCCTGAATTAGTCATGAAAGATGGGGAA 18602 30 100.0 37 .............................. GAATATATCTATGTCAATAAAAGATTTTCAAGTTGGA 18535 30 100.0 38 .............................. CACTTATCAAAAAAAGGATTGCCTTGCTTGTGGGAATC 18467 30 100.0 39 .............................. AGTTTTGCAATCCAATAATCTGTAACAGCATGATTATCA 18398 30 100.0 35 .............................. ACATTAGGCTGTTTTTTACCTTTTAGCCTGGAATA 18333 30 100.0 36 .............................. TCGCCATACTTAATTATAAATTTGTCGTTAGCAAAA 18267 30 100.0 37 .............................. CTTTTTCACAGAGGAAGGATGGTGAAAAAATATATTC 18200 30 90.0 0 ...........................GCA | T [18172] ========== ====== ====== ====== ============================== ======================================= ================== 15 30 99.3 37 GTTTTTATAGTACCTATAAGGAATTGAAAC # Left flank : GTATTGTATAGCACTTTACAAAATGAATATAAAAAATATACATATTATTATCATCCGGGAGAAAAGGAATTTCCCAAGCTGATACGAGACAATTTGCTAAGAAAGTATAATACCTTTCACTCGGGATCTCACGATCTGGAGTTTGAAATTAAACCTTTGGAATATGAGAAAAATAGACCTGTCATTACTACGTATAAGAATACCATTATTAAAGGATGGAACGGAAAGTTTGAGATTGAGGGAGACAAGAAATTAGTGAATATTGCATATAATTACGGTTTGGGTAGTAAAAATTCTCAAGGATTCGGAATGATTGAAGAAGAAGAGCATTTCATTTGTCGTCGACCTTTAATAGTGTAAAAATCCCAGTACATCGACGACAAAAGAAAAAGCAGGAAAAATTTGAAAATGCAATAATCTATTAAAAATTAGGTTAACATAAGGCAAATAAAATTTTTTTAGAAAAATAAAGAAGTATTGATTTTATGCTGTTTTTGTAG # Right flank : TGAAATGAGAGATGTATAGATACTTTGTGTAAAAAGAAATCAAATTTTGAATGATTGAGATATGATAACGCATCTTGAAAAAGATCTTGCTATTTTGCAAGATCTTTTTTTGTATCAATAATCTAATATGTAAAATAATATGAAAAATTCAAATAATATGTTGAATTTGCTCGGTCATTGTAATATAATCATATTATGGGATAAATTTCTAAATAATCACAAAGAAAGGAGGTTGCTTGATGCTAGAAGCGATAAAGGATATTGGAAGTTTAAAAATTAAACAGGGAGACAAAGATATTTTAGAAATATTATTACAAGATCCAAATGCAAACGGTAGTTATAATAAAGTTGCTGCAATTATATTGGAAGAATCCCAAGGCATTTTCAACTTTGTAGATGTTGAATTAGAAGATTATAATTCAGATAAGATTTTTTCATATTTATTTAGAAGAGGAAATTCAAGAGAATCAAATTATTCATTAACTGCAATATTAACAGAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 21314-20678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEP010000009.1 Defluviitalea raffinosedens strain DSM 28090 Ga0454058_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 21313 30 100.0 38 .............................. TCACAAGGAAAACCGGTAATTGTTAGTATGGGAAGAGG 21245 30 100.0 37 .............................. ATTTTTCTGGAATCTTTGTATGATCTATATCTAATTT 21178 30 100.0 36 .............................. TATCTACGTCAATTGTTCTATATATAAGCAAAAAAA 21112 30 100.0 37 .............................. TATATCCAAGGGCATCATGTCTGTAGTATGGTTGCGT 21045 30 100.0 37 .............................. TAATAATGAAGTAACCTGGAATTTTGAAAAGTTCAAA 20978 30 100.0 37 .............................. CGCATTCTTCATGAGCCATACTGTCATCTCCTATCTG 20911 30 100.0 36 .............................. ATGCATACCCCATAGTCCATCCTATTTGGATATGGA 20845 30 100.0 40 .............................. ACATTATCCGGGTTGATTTTTTCCATGATTTCTTTATACA 20775 30 100.0 38 .............................. AATATTGTTCAGCAGTTACTGTCATAAAAATGTTCTCT 20707 30 90.0 0 ........................C...GT | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 99.0 37 GTTTTTATAGTACCTATAAGGAATTGAAAC # Left flank : GGAAACTATGAGAGTGACAACTTTTTGTTGCACAGGGAAAATATAATTGATAAAATAATTCCATCATTACTTTTGTTATTTTAGAGGACCTGGTCTCAATATTGATGAAAAGAGATAAAATCATCTTAGGTCAAAATGAGATTTCTTCTATATTATCCATTTCCATGGAAGAATTTAAAGTGAGAGATTAAAAAACACTATTATTAAAGGATGGAATGGAAAGTTTAAAATAACGGGAGATAAGAAATTAATGAACATTGCATATAATTACGGTTTGGGTAATAAAAATTCTCAAGAATTCGGAATGCCTGAAGAAGAATAGAGAGCATTTCATCTGTCGTCGACCTCTAATAGTGTAAAAATCCCAGAACATCGACGACAAAAGAAAAAGAAAGAAAAGCGTGAAAAAGCAATAATCTATTAGAATTTAGGTTAACATAAAACAAATAAAAACTTATGAAGAAAAATAAAGAAATATTGATTTTATGCTATTTTTATGA # Right flank : TTTATGATTAAGAAGTGGTTAAGGGATTTCAGGTTTCTAGATCAAGTTTGATGTATATATAAAAAGGTAACCAAAAAAACTCAATAAAGAGATGTCTATGATACACAAAAGAGGATTTACTGCAGAATTTAAGCAAGACATTGATGAACTTACTATTAAGAAAATAAAAAACTGAAAGTGCAAAGGATATATATCCACGGAAATTCTATTAGCAAATAGTATCAAAATTAAAAGGAGAATGTTATGTAGATTGCAGTTAGCAGAAAATCAGTAAATTAGCAGAAAAGGCTAAGAAGCTAGGCTAAAAGATGCTACAGTGAATGGATAAACAGTGAACCTCATAACACCAGCCCAAGTAATTAATGGCAATACAAATGATCACCGTAAAATTCATCGCCCAAAGTACTGGAGCAGATGTAAAATGGGGCAGTAGAAGCAGAATGGTAGTGATTACGACCAAATTAATCTAGAGGTGATATTAAAAGAATATGACAAGTTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //