Array 1 147553-148253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIYJ010000009.1 Escherichia coli strain EC352 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147553 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 147614 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 147675 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 147736 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 147797 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 147859 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 147920 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 147981 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 148042 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 148103 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 148164 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 148225 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173802-176148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIYJ010000009.1 Escherichia coli strain EC352 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173802 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACG 173863 29 100.0 32 ............................. CCTCATGCGTTTTAGCGGACGGCGTGGAAAAG 173924 29 100.0 32 ............................. TTGTTGATGATGATTATTGGGATGATGAATTT 173985 29 100.0 32 ............................. GCCGCCGCATGGCAAAACAAACATCGGGGTAC 174046 29 100.0 32 ............................. CAAACAAGCCCCGCGCCGCGTTGGCTGAATAA 174107 29 100.0 33 ............................. CGGTGAATTACAGCCTCCAGGGGGAAAATGGAC 174169 29 100.0 32 ............................. TGATCCGCTATTGATTCAATCGCTTCTGACGC 174230 29 100.0 32 ............................. CCGCCAATAATGCGCCCTTCCTCTATTTTCAC 174291 29 100.0 32 ............................. CGCGGAAAAATATTGGCATTGACGGCGATATT 174352 29 100.0 32 ............................. GACCAGTACATCACTTGAGGCAAATACTCAGT 174413 29 100.0 32 ............................. CCGCAGCACCAGCCGCGACGGCAGCCACCCAC 174474 29 96.6 32 ............................C AGATAGGTCAGAGCGCGCAAGATTGGGCGAAA 174535 29 100.0 32 ............................. CAGATATTATAATCTTGCTCCCGTATATAGCT 174596 29 100.0 32 ............................. GCGGCGATTTTCTCGGCTCAAGGACTGATGGT 174657 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 174718 29 100.0 32 ............................. ACAACAGCGACGGAACAGGGCAACGCCTTTAC 174779 29 100.0 32 ............................. TTAAATATATCGTTACCGCTCCTGAATTTATT 174840 29 100.0 32 ............................. CGAAGCTCCTTCCGTTGATTACCAAAACGTTG 174901 29 100.0 32 ............................. TGTCGAGCAACTACATGTTTGGTGTTGATTGT 174962 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTTCCCCGTCGCACCG 175023 29 100.0 32 ............................. AAGGCGGCAGAAATAAAGTAATAAACGGATTG 175084 29 100.0 32 ............................. GTGGACCGGAGGGCGACAGGCAAACCTGTTTT 175145 29 100.0 32 ............................. CATCTGCACCAGCTCGGCACTGATTTGATCAT 175206 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 175267 29 100.0 32 ............................. CGCCGCGACAAATAATCTCAGCACACCTAAAA 175328 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 175389 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 175450 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 175511 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 175572 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 175633 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 175694 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 175755 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 175816 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 175877 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 175938 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 175999 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 176059 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 176120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.6 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //