Array 1 23454-22069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAC010000023.1 Bifidobacterium longum strain 1001262B_160229_E5 NODE_23_length_23542_cov_70.1995, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 23453 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 23389 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 23325 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 23261 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 23197 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 23133 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 23069 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 23004 36 97.2 28 ..........................G......... TCCATGACCGCGTCCATCACCTCATGCC 22940 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 22876 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 22811 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 22747 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 22683 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 22619 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 22554 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 22489 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 22425 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 22360 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 22296 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 22232 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 22168 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 22104 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 22 36 99.2 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CTACCTGACCTGCGGCAAACTCGACCTCAGCACCGTCACCACCTGACAGACCCACCCACACCAAACAGCGAAAGGCCATAGTTTTCAA # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1037-102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAC010000046.1 Bifidobacterium longum strain 1001262B_160229_E5 NODE_47_length_1239_cov_64.667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1036 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 971 36 100.0 28 .................................... CAACACGTACAATCCGCAGGGCGTCGGC 907 36 100.0 28 .................................... TATTGATACGTATGCGCTCGATGCTGAT 843 36 100.0 28 .................................... TTGAGGTCAATGCACAGACCGCAACCAG 779 36 100.0 28 .................................... CAACTGATAAAGCGAAAACCGCAATACA 715 36 100.0 28 .................................... GTTCGTCCGACGGTGTGCGTCCCGCGCG 651 36 100.0 28 .................................... GCTAAGTATTGCTTAACAGATTGATATA 587 36 100.0 28 .................................... GTGAGCATTGCGGTGTTTGGGTTGCGCA 523 36 100.0 28 .................................... GAATCTGGCGCAACATGTCGCGCGCGTC 459 36 100.0 29 .................................... GAAGAATCCGTGTAGAACTTGGCCTTGTA 394 36 97.2 28 ......................C............. GCCTCATGATGAAGAGTCGCAAATCATC 330 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 265 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 201 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 137 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 15 36 99.8 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GAAAATCGTACACAGGACACGGGCCATGTCTCTATCTCAGGCCCTCAACCAATTTGCGCAAAATCTCGGGCGTTATCGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTA # Right flank : CGTTGTAATCGGTCATAATAGTTTTGGCCTTTCGCTGTTTGGTGTGGGTGAGTGGGTCGGGGGGTGGTGGTGCTGGTCGGGTAGTTTGGGGGGTATGGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //