Array 1 40849-38899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUU010000019.1 Streptococcus thermophilus strain Moz77 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40848 36 100.0 30 .................................... TACATTAGGTATAATATGGTTTGCTTGATA 40782 36 100.0 30 .................................... TGCAGTGTTGGACACAAACCATTAAAAGAG 40716 36 100.0 30 .................................... AAGCCGTTCTACAATTACAAGAGTTCGGAA 40650 36 100.0 30 .................................... ATTTTTTAAGAAAATAAAATATAAACGTGC 40584 36 100.0 30 .................................... CGTGGCCTGACCTCTATTTTTTGTTTAAAA 40518 36 100.0 30 .................................... AAACGAATTGCATGACCTTTGGGTTGCTCA 40452 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 40386 36 100.0 30 .................................... ATAGAACACTACGGAATATAGTAGGTCGTG 40320 36 100.0 30 .................................... CCATCAGCTCCCGGAAATCCTAACGGTAAT 40254 36 100.0 30 .................................... TTGGATTGTTTGATTCCAGCCCAGCACGCT 40188 36 100.0 30 .................................... CAGTGGTGCGTAAATAACAGGGTCGCCTTT 40122 36 100.0 30 .................................... AGTATCGATGACAGACCGATACACTTTGGG 40056 36 100.0 30 .................................... TGGTTGATTTATGGCCGTTCTTGTACATCG 39990 36 100.0 30 .................................... ATTGACTTACTCAATGTTTGGATCGCGTAA 39924 36 100.0 30 .................................... ACAACAGTTATATTTGATGAGTTCTTGACT 39858 36 100.0 30 .................................... TCGTTCTACTGTTAAACCAATCTTGAAACA 39792 36 100.0 30 .................................... TATATTCGTCTGGTTCTAAGTATTTATTCT 39726 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 39660 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 39594 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 39528 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 39462 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 39396 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 39330 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 39264 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 39198 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 39132 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 39066 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 39000 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 38934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22919-23171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUU010000014.1 Streptococcus thermophilus strain Moz77 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 22919 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 22991 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 23067 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 23142 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 258312-262042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUU010000007.1 Streptococcus thermophilus strain Moz77 Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 258312 36 100.0 30 .................................... TTTTCAATCATTTTACTTACTATTTCCTTT 258378 36 100.0 31 .................................... AAATTCTATTTATTCAAGGAAAGGCACAGCA 258445 36 100.0 30 .................................... CCAACGGTTAAAAGACAGGACTTATGATGA 258511 36 100.0 30 .................................... CGTCAAGTTGGCGGAATGTTTGACTGGATT 258577 36 100.0 30 .................................... ATTCAAGTTGAAAAGGACTTCAACAGTCCA 258643 36 100.0 30 .................................... TCTTGGAATTTCTGTTTTACTGCTGGTGTA 258709 36 100.0 30 .................................... TAATCAACAACAGAAAGCACCAAACTTTGC 258775 36 100.0 30 .................................... AAGAAGCCAGTCGATGAGGCTAAAAATTGG 258841 36 100.0 30 .................................... GAATTGGGCTTGCATAGTGACCAAGTTATT 258907 36 100.0 30 .................................... TCATTTATCAAGAGAACTTCCCACAACGTG 258973 36 100.0 30 .................................... TGTTGATATTGATTGGAGCGCTTATGTTTT 259039 36 100.0 30 .................................... TTGACCAAGCTACAACACGTTTGGCGGCAT 259105 36 100.0 30 .................................... TATTTTCGGATGAGGTACCCAACTATAAAT 259171 36 100.0 30 .................................... TTTTAAATGTATCTGTATTAGCACCTGCTG 259237 36 100.0 30 .................................... GAATACGACAGAAATTATCGGCAACATCTA 259303 36 100.0 31 .................................... AAAGCTGGGATGAGCATTGGGATAAGACCAA 259370 36 100.0 30 .................................... ACCAATCCTAGCGATTATTCGTGGACACGG 259436 36 100.0 30 .................................... TGTTTCCATACCATCAATCATGGCTTGTCC 259502 36 100.0 30 .................................... TGTAATGGTTTAACTTAGTGAGTTCAACCG 259568 36 100.0 30 .................................... TCTACGAGGATGAAAAAGGTGAGCTTAAAA 259634 36 100.0 30 .................................... AGACTAATTAATTTATTAATTGATGTAGAT 259700 36 100.0 30 .................................... GAACCCACTTTGTTCTTTATAGTAGTTAGT 259766 36 100.0 30 .................................... TTGAAACGCTATCCAACAGCTAAGCAAGCT 259832 36 100.0 30 .................................... CAATATAGTAGTGTATTTACTGATTATGTT 259898 36 100.0 29 .................................... GCCTCACCCGAGAAACGTTCAAAGGTTTT 259963 36 100.0 30 .................................... TCCTGGCGTGTATTTTGGCTCTATAGTTTT 260029 36 100.0 30 .................................... GATATGAAATCACAAGTAATGAGCCTAGCA 260095 36 100.0 31 .................................... CAAACAGTTACTATTAATCACGATTCCAACG 260162 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 260228 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 260294 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 260360 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 260426 36 100.0 29 .................................... TCTTTGTGATATAAATGAAAAAAAGACTA 260491 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 260557 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 260622 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 260688 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 260754 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 260820 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 260886 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 260952 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 261018 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 261084 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 261149 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 261215 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 261281 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 261347 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 261413 36 100.0 30 .................................... AATTGGAACGTGTCAAACGAACAAAGGTCA 261479 36 100.0 30 .................................... TCTGGTAAAGAAATTGACGGCGCTCACTTA 261545 36 100.0 30 .................................... ATAAGTTGTATAATGTTAGTGTATTCACTG 261611 36 100.0 30 .................................... GGTACTACACCTCAAACGGTGAGTGCATGG 261677 36 100.0 30 .................................... ATATTTCGAAAGATACAAGGACACTTACAC 261743 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 261809 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 261875 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 261941 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 262007 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 57 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //