Array 1 29582-27922 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWY01000058.1 Salmonella enterica isolate STY26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29581 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29520 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29459 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29398 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29337 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29276 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29215 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29153 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29092 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29031 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 28970 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 28909 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 28848 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28787 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28726 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28665 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28603 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28500 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28439 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28378 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28317 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28256 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28195 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28134 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28073 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28012 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27951 29 96.6 0 A............................ | A [27924] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5300-6792 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWY01000117.1 Salmonella enterica isolate STY26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5300 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5361 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5422 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5483 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5544 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5605 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5666 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5727 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5788 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5849 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5910 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5971 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6032 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6093 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6154 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6215 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6277 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6338 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6399 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6460 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6521 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6582 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6643 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6704 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6765 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //