Array 1 452626-453796 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWR01000020.1 Cronobacter sakazakii strain CE28 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 452626 28 100.0 33 ............................ CTGTTGTGCCACTACCAGCGAACGGATCTAACA 452687 28 100.0 33 ............................ TCATTAACACTTTCGTTCAGATGGGGGTTGAAT 452748 28 100.0 32 ............................ AAATGCCTCGATGCTGGCGGCAATTTCCTCTG 452808 28 100.0 32 ............................ ATGTCTGGCGGCGGCAGGCGCCCAGATTCTTC 452868 28 100.0 32 ............................ GCCTGGTTCCTGCTCGACACGACGCAAACGTT 452928 28 100.0 32 ............................ ACAGCGTCCTGCATCGTCCCGGCCAGCGTGCG 452988 28 100.0 33 ............................ GTCGACCGCGCGAAATTCACCGGCGGGCAGCAA 453049 28 100.0 32 ............................ TCTGCAATCCCCGCTGAGGCGCTACCGCCGCC 453109 28 100.0 32 ............................ AGCAACACCAGCCCCGCGACGCGCTCCTGATC 453169 28 100.0 32 ............................ GTTACGACGCCGATCACGTCGAGTTCGTTTAG 453229 28 100.0 32 ............................ AGGATATCGGGCTAACCGTCGCTATCAAATCC 453289 28 100.0 32 ............................ GCAGCGGCTCCACCGAATGAACCGATTGATGC 453349 28 100.0 32 ............................ AGGGCCGGAACTGCCAGCTATGTTGACGGCGG 453409 28 100.0 32 ............................ ACAAGTGCCGGATACAGAGCCACGTAATGACG 453469 28 100.0 32 ............................ TTACCCGCCGCTACGGCCATATTCAGCGCGGT 453529 28 100.0 32 ............................ TTTAGCAAACGCCAGCAGCACGGCGAGCTGTC 453589 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTATAGCGA 453649 28 100.0 32 ............................ TGAATCCAGCCCGACACCGTTTTCTCGTCGTC 453709 28 100.0 32 ............................ GAGGCCGATAGATTTCTGCGCCTGCGCCATAA 453769 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTATAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAACGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATATCACGGCATATTTAAAGCCTTAATAATAGACTTATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 462896-464544 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWR01000020.1 Cronobacter sakazakii strain CE28 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 462896 28 100.0 32 ............................ CGGAATAAAACCGAAGCAGACCATCACGTCAG 462956 28 100.0 32 ............................ GCTGATTCGCTGCCTGCTCAAAAATAGTCCGC 463016 28 100.0 32 ............................ ATCCCTGGCGAATTTTTTCATCCATCCATGAC 463076 28 100.0 32 ............................ ACGCTGGGAGAATGTGAAATGAAACGCGCGCC 463136 28 100.0 32 ............................ AACTAGGCAGGATCACCATGAAAGAGCTGCCT 463196 28 100.0 32 ............................ GCTGCACGACGCAGGAAAGCTTCCATGCCCGT 463256 28 100.0 33 ............................ GTCCCTCGCGGCCGCGCAGGAGCTGATGCCCGG 463317 28 100.0 32 ............................ AGTACGTAGCGGATAAATACCAGGTGCCTCCC 463377 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 463437 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 463497 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 463557 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 463617 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 463677 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 463737 28 96.4 32 ..........A................. TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 463797 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 463857 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 463917 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 463977 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 464037 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 464097 28 100.0 32 ............................ TCCGGCGTTCGGTTTGCGGCGGTATCGTCCCA 464157 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 464217 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 464277 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 464337 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 464397 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 464457 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 464516 27 92.9 0 ........................-..T | T,G [464536,464539] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAATCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 199891-200531 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWR01000022.1 Cronobacter sakazakii strain CE28 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199891 29 100.0 32 ............................. TTGACAAACCCGTTTTGACCACCCCTAAACCT 199952 29 100.0 32 ............................. CCAGCCAGCCCCAATGTGTCGATAAAAAGTGA 200013 29 100.0 33 ............................. CACACGGCGGCACAGACGCACTGAGCAACCTGC 200075 29 100.0 32 ............................. CGGGTGTGCCTTTTGGATGTAATTTCCACGAC 200136 29 100.0 33 ............................. CTCCGCAAACTGAAACGCGACCGTGAAGTGGCG 200198 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 200259 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 200319 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 200380 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 200441 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 200502 29 79.3 0 .C...........C...A..A....T..T | C [200527] ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.2 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227016-227776 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWR01000022.1 Cronobacter sakazakii strain CE28 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227016 29 100.0 32 ............................. ACATACTATGAGAGCGCAGCGGGCGAGCGTAT 227077 29 100.0 32 ............................. AGGGGATGAATCACGCGTACCCGTGCCGTGTA 227138 29 100.0 32 ............................. CTTTCGCTTCAACAGTCACTGAGCCGTCAGTG 227199 29 100.0 32 ............................. TAAAATGTTCCCATTCTCCCCTACTGGTTGCC 227260 29 93.1 32 ............T...............T TCCATCGTGTCTCTGATGAATGCGCGCGCAGT 227321 29 96.6 32 ............T................ GATAGGCTCCACATTTTTTTGTGCCGCCATGT 227382 29 89.7 32 .A..........T...............A GTAAAGCCCATTGTTCCAGCGTTGTTTTATGC 227443 29 93.1 32 .A..........T................ TAAATATTTTTTGATTACTTATTTGTGTTCAA 227504 29 100.0 32 ............................. GTCGACGGGCAGGGCCGCCCGCTCTGGCTGCC 227565 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 227626 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 227687 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 227748 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGTGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //