Array 1 9350-11421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUF010000011.1 Collinsella aerofaciens strain J1101004_170508_A10 NODE_11_length_67247_cov_85.9567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9350 36 94.4 30 ..........A..........G.............. GAGGGGTACTTCCAGTGCAAAATCTCACCA 9416 36 100.0 29 .................................... ACCGCAACATTGCTGATTCAGTTGAAAAA 9481 36 97.2 29 .........A.......................... GTGGAGCGAATGGAAGAGCACCAAGGTCG 9546 36 100.0 29 .................................... ACACCTCCATATCCCAGCGCTCGTTTAAG 9611 36 100.0 30 .................................... CTCGAACATATACCGGTTGATGATGTCCAG 9677 36 100.0 29 .................................... CAGCAGCTGCACTGGATAGCTGTAAGAAA 9742 36 100.0 29 .................................... GTGTTCCGCGTCATGTCGAATGGTGACGA 9807 36 97.2 29 ...............G.................... GCAGGTCGGGCAGATTATGCCTGCTAGAC 9872 36 100.0 29 .................................... GAAGGGAAAGCGCGAGTACCTTGCAACCA 9937 36 97.2 30 ...........................T........ GGCGCCTTGCACTAACGATTATAGGCTAGG 10003 36 100.0 30 .................................... CAAACGATACCGTTACCATCAACGTTACGC 10069 36 100.0 29 .................................... GTGTTCCGCGTCATGTCGAATGGTGACGA 10134 36 97.2 30 ...........................T........ TGATGTCGCCTACGAACTTATCGCCCCACA 10200 36 100.0 30 .................................... GGAATGGTAAACCTGAACGACGGCGTACAT 10266 36 100.0 30 .................................... CGTGTACCTGTCCGCGACCAACGATTTCCA 10332 36 100.0 30 .................................... GTACCATATCGAGAACTGGATCGACGACAT 10398 36 100.0 30 .................................... GCGGTGCCGCCCGTGGACGGCCTCCGAGGA 10464 36 100.0 30 .................................... AGACGCGCCGCTGTGCGAGGACTGCTGGGG 10530 36 100.0 29 .................................... AAGCTCGTGGACTTCACCGCGAGCAACAA 10595 36 97.2 30 .........T.......................... AGTCATAGCCCGACGCGCAAGCGGTCCGAG 10661 36 100.0 30 .................................... TCAACGTCTCCATGGCCTATATGAACGTGT 10727 36 100.0 29 .................................... GTATGGTCGGAACCGCCCCAGCGCTGAGC 10792 36 100.0 30 .................................... GGGGATGTCGGGCACGATGACGGTGCGGTA 10858 36 100.0 30 .................................... AAGATGAGCAGGAGGGACATGATCCTTCTG 10924 36 100.0 30 .................................... CGACCGAACGGTGTGACTGTCCCGAATCGT 10990 36 100.0 30 .................................... TAACGGAAGTCTGTTCGGTGGCGAGGACGA 11056 36 100.0 30 .................................... ATGGAGGTCGGTAGAGTGGCGATAGCCGTG 11122 36 100.0 30 .................................... GAGACAACCTGTCCAGCAACTACGACATAT 11188 36 100.0 30 .................................... TGCTGTGATCATCGTTATGACTCGATGGCA 11254 36 100.0 30 .................................... GCAACGAGGACCTTGCCCGCGCGGTCGTCA 11320 36 100.0 30 .................................... TATACAAGACGTTGCCCGGTCAATGCCCGT 11386 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.4 30 GTTTGATTACCAGTTAGATCGACACTGCTCCAAAAC # Left flank : ACAGATTATATTGTTGTCTGCCTACCAGTCAGATCGACACTGCTCCAAGACTATGCGGTTGTGTGCTTAGCTAGTACCAGAAAACGGTGCCGCCATCCCGTACGCTACCATCGCGCAGCATGCGGCGAGCCTCTGCGAACATGTGCTCCGCATAGCGCCCATGCCTATCGTTCGGCGATACGGACAGAACGGAAACGATACCGACACTGCGGTCGAGGACCACGGTACCCGGCTCTCCCTTGCCCTCGGGATAGTATTCGAACGTCGCGACATTACCGTCGTCTTCGATCTTCTTAAACTCGAGCATCTTCTGGCCACTCCACCTCATCCAACCATGCGTCCAATGTGTCCTGGCAACTGTACCGCAGACTCGCAGCGTCGTAGGCTGCGGGCTAATCCGTCCCTGATCCATGTAATGCGATTCCAGCAGCTCGCGCTTGAACATCATCGCGCAGCGCGCATGCAGTTCCTCGCCATCGAAAAGCCTGCACATTGTCCCA # Right flank : CCATTGGAGCAAATTCCCTACTGCGACGGGACGTTCAATCTAACCCGGTCTGTTCTTTCAATGCTCTAAAAACTGCAGGTCAACCGTTAGTTTATGTTCATGTCCGTAAGCCATGGTATCTTTTTTATTCTCCAGGAGCAACAAGCTCAACTTAAGAAAAAACACGTGGTCATAGAGCGTTTGCAGCTCATTTTCCGTCAAAAACGTTTTGAGATTTACGAATACGATTGTCTTTCTGCAGCCAGCGTCAAGAGCAAATGAAAGGAAATTAAGCAGATTATCAAGGAACGATTTATCTTCTTGAGGCGCTGCGCCAAATCCTAAAAACTTGAGGTAGCGCTTCAAATCCCATTCTAACCCAAACCCCAAATCGGCATTAAAGCCAAGGTTCAATCCGCCTAAACGCAGCTTTATTGCACGTTCAGCCTCTTCCACCTGCATACGCAGATCTTCGTCTTCTAGAAACTCACGCTCAACCTTCTTGGTGATTGCGGTCATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTACCAGTTAGATCGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //